HEADER RNA BINDING PROTEIN/RNA 01-NOV-21 7SOP TITLE LAM DOMAIN OF HUMAN LARP1 IN COMPLEX WITH AAAUAA RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF LA-RELATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 323-410; COMPND 5 SYNONYM: LA RIBONUCLEOPROTEIN DOMAIN FAMILY MEMBER 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(P*AP*AP*AP*UP*AP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LARP1, KIAA0731, LARP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS WINGED HELIX FOLD, RNA BINDING DOMAIN, RNA BINDING PROTEIN, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,K.GEHRING REVDAT 4 18-OCT-23 7SOP 1 REMARK REVDAT 3 23-NOV-22 7SOP 1 JRNL REVDAT 2 31-AUG-22 7SOP 1 JRNL REVDAT 1 03-AUG-22 7SOP 0 JRNL AUTH G.KOZLOV,S.MATTIJSSEN,J.JIANG,S.NYANDWI,T.SPRULES,J.R.IBEN, JRNL AUTH 2 S.L.COON,S.GAIDAMAKOV,A.M.NORONHA,C.J.WILDS,R.J.MARAIA, JRNL AUTH 3 K.GEHRING JRNL TITL STRUCTURAL BASIS OF 3'-END POLY(A) RNA RECOGNITION BY LARP1. JRNL REF NUCLEIC ACIDS RES. V. 50 9534 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 35979957 JRNL DOI 10.1093/NAR/GKAC696 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 14361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0100 - 3.3400 1.00 1406 157 0.1807 0.1811 REMARK 3 2 3.3400 - 2.6500 1.00 1339 148 0.1881 0.2157 REMARK 3 3 2.6500 - 2.3200 1.00 1326 148 0.1861 0.2114 REMARK 3 4 2.3200 - 2.1100 1.00 1302 145 0.1741 0.2335 REMARK 3 5 2.1100 - 1.9600 1.00 1298 144 0.1842 0.2580 REMARK 3 6 1.9600 - 1.8400 1.00 1291 144 0.2132 0.2623 REMARK 3 7 1.8400 - 1.7500 1.00 1292 143 0.2291 0.2748 REMARK 3 8 1.7500 - 1.6700 1.00 1294 144 0.3046 0.3393 REMARK 3 9 1.6700 - 1.6100 0.99 1289 143 0.3593 0.4305 REMARK 3 10 1.6100 - 1.5500 0.86 1087 121 0.3726 0.4594 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.246 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 815 REMARK 3 ANGLE : 1.343 1116 REMARK 3 CHIRALITY : 0.081 128 REMARK 3 PLANARITY : 0.011 133 REMARK 3 DIHEDRAL : 8.752 129 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1333 23.2902 25.5498 REMARK 3 T TENSOR REMARK 3 T11: 0.2029 T22: 0.2404 REMARK 3 T33: 0.1965 T12: -0.0100 REMARK 3 T13: -0.0001 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.6978 L22: 3.4037 REMARK 3 L33: 2.9362 L12: -0.6512 REMARK 3 L13: 1.2727 L23: -1.7022 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: 0.0464 S13: 0.1395 REMARK 3 S21: 0.0543 S22: -0.1432 S23: -0.0170 REMARK 3 S31: -0.2881 S32: 0.2448 S33: 0.0800 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 352 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0128 25.9580 17.2343 REMARK 3 T TENSOR REMARK 3 T11: 0.2581 T22: 0.2954 REMARK 3 T33: 0.3854 T12: -0.0066 REMARK 3 T13: -0.0581 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.1906 L22: 4.5253 REMARK 3 L33: 3.2082 L12: 1.1717 REMARK 3 L13: 0.9551 L23: -1.8451 REMARK 3 S TENSOR REMARK 3 S11: 0.0756 S12: 0.0483 S13: 0.0730 REMARK 3 S21: -0.4198 S22: 0.0866 S23: 0.6865 REMARK 3 S31: 0.0120 S32: -0.4124 S33: -0.1206 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 361 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8300 13.5369 22.6880 REMARK 3 T TENSOR REMARK 3 T11: 0.2244 T22: 0.3025 REMARK 3 T33: 0.2445 T12: 0.0034 REMARK 3 T13: 0.0094 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.9097 L22: 1.5587 REMARK 3 L33: 1.2089 L12: -0.0085 REMARK 3 L13: 0.5091 L23: -0.5859 REMARK 3 S TENSOR REMARK 3 S11: 0.0671 S12: 0.2023 S13: 0.0324 REMARK 3 S21: -0.2173 S22: -0.1201 S23: -0.1096 REMARK 3 S31: 0.0894 S32: -0.0875 S33: 0.0076 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4106 13.8956 29.6554 REMARK 3 T TENSOR REMARK 3 T11: 0.1996 T22: 0.2745 REMARK 3 T33: 0.2518 T12: -0.0118 REMARK 3 T13: 0.0041 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 5.2829 L22: 3.5227 REMARK 3 L33: 6.8360 L12: -2.0840 REMARK 3 L13: 1.6038 L23: -0.8696 REMARK 3 S TENSOR REMARK 3 S11: 0.2900 S12: -0.2459 S13: 0.0702 REMARK 3 S21: -0.4173 S22: -0.0316 S23: 0.0068 REMARK 3 S31: 0.3358 S32: 0.1626 S33: -0.2695 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 385 THROUGH 398 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0045 22.8914 27.7471 REMARK 3 T TENSOR REMARK 3 T11: 0.2809 T22: 0.2206 REMARK 3 T33: 0.3005 T12: 0.0217 REMARK 3 T13: 0.0237 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 5.7284 L22: 3.9619 REMARK 3 L33: 4.0090 L12: 1.8893 REMARK 3 L13: 1.1785 L23: 0.5559 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: -0.3773 S13: -0.2428 REMARK 3 S21: 0.3151 S22: -0.1424 S23: 0.7226 REMARK 3 S31: 0.2762 S32: -0.6082 S33: -0.0676 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 399 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7117 32.7651 20.2252 REMARK 3 T TENSOR REMARK 3 T11: 0.3145 T22: 0.2350 REMARK 3 T33: 0.2991 T12: 0.0298 REMARK 3 T13: 0.0302 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.7116 L22: 2.4950 REMARK 3 L33: 7.2020 L12: 0.0942 REMARK 3 L13: -0.0267 L23: 0.4115 REMARK 3 S TENSOR REMARK 3 S11: 0.3258 S12: -0.0616 S13: 0.1485 REMARK 3 S21: 0.1075 S22: 0.1623 S23: 0.1486 REMARK 3 S31: -0.4612 S32: -0.4293 S33: -0.2953 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -4 THROUGH -1 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7464 20.5220 17.7234 REMARK 3 T TENSOR REMARK 3 T11: 0.3898 T22: 0.5418 REMARK 3 T33: 0.4809 T12: 0.0071 REMARK 3 T13: 0.1127 T23: 0.0846 REMARK 3 L TENSOR REMARK 3 L11: 5.5201 L22: 7.4690 REMARK 3 L33: 2.1838 L12: -0.2116 REMARK 3 L13: 0.8470 L23: 1.0160 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: 1.0338 S13: -0.2066 REMARK 3 S21: -1.1529 S22: -0.1338 S23: -1.6797 REMARK 3 S31: -1.0182 S32: 1.0635 S33: 0.1581 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SOP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000260787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.52154 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14361 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7SOO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 25% (W/V) PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.26050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.68700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.12950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.68700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.26050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.12950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 312 REMARK 465 GLY A 313 REMARK 465 SER A 314 REMARK 465 SER A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 SER A 322 REMARK 465 A B -6 REMARK 465 A B -5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 332 CD NE CZ NH1 NH2 REMARK 470 LYS A 385 CD CE NZ REMARK 470 LYS A 388 CG CD CE NZ REMARK 470 LYS A 396 CD CE NZ REMARK 470 GLU A 404 CG CD OE1 OE2 REMARK 470 LYS A 405 CE NZ REMARK 470 U B -3 O5' C5' C4' O4' C3' C2' O2' REMARK 470 U B -3 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U B -3 C5 C6 REMARK 470 A B -2 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U B -3 O3' A B -2 P -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A B -2 O3' - P - OP1 ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 394 -114.39 56.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7SOO RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT RNA DBREF1 7SOP A 323 410 UNP LARP1-3_HUMAN DBREF2 7SOP A Q6PKG0-3 323 410 DBREF 7SOP B -6 -1 PDB 7SOP 7SOP -6 -1 SEQADV 7SOP MET A 312 UNP Q6PKG0-3 INITIATING METHIONINE SEQADV 7SOP GLY A 313 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOP SER A 314 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOP SER A 315 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOP HIS A 316 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOP HIS A 317 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOP HIS A 318 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOP HIS A 319 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOP HIS A 320 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOP HIS A 321 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOP SER A 322 UNP Q6PKG0-3 EXPRESSION TAG SEQRES 1 A 99 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN GLU SEQRES 2 A 99 LEU LEU LYS ASP TYR ILE LYS ARG GLN ILE GLU TYR TYR SEQRES 3 A 99 PHE SER VAL ASP ASN LEU GLU ARG ASP PHE PHE LEU ARG SEQRES 4 A 99 ARG LYS MET ASP ALA ASP GLY PHE LEU PRO ILE THR LEU SEQRES 5 A 99 ILE ALA SER PHE HIS ARG VAL GLN ALA LEU THR THR ASP SEQRES 6 A 99 ILE SER LEU ILE PHE ALA ALA LEU LYS ASP SER LYS VAL SEQRES 7 A 99 VAL GLU ILE VAL ASP GLU LYS VAL ARG ARG ARG GLU GLU SEQRES 8 A 99 PRO GLU LYS TRP PRO LEU PRO PRO SEQRES 1 B 6 A A A U A A FORMUL 3 HOH *60(H2 O) HELIX 1 AA1 GLN A 323 PHE A 338 1 16 HELIX 2 AA2 SER A 339 GLU A 344 1 6 HELIX 3 AA3 ASP A 346 LYS A 352 1 7 HELIX 4 AA4 ILE A 361 SER A 366 1 6 HELIX 5 AA5 PHE A 367 THR A 374 1 8 HELIX 6 AA6 ASP A 376 ASP A 386 1 11 HELIX 7 AA7 GLU A 402 TRP A 406 5 5 SHEET 1 AA1 3 LEU A 359 PRO A 360 0 SHEET 2 AA1 3 LYS A 396 ARG A 399 -1 O VAL A 397 N LEU A 359 SHEET 3 AA1 3 VAL A 390 VAL A 393 -1 N VAL A 393 O LYS A 396 CRYST1 36.521 46.259 57.374 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027382 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017429 0.00000