HEADER RNA BINDING PROTEIN/RNA 01-NOV-21 7SOR TITLE LAM DOMAIN OF HUMAN LARP1 IN COMPLEX WITH AAA RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF LA-RELATED PROTEIN 1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: RESIDUES 323-410; COMPND 5 SYNONYM: LA RIBONUCLEOPROTEIN DOMAIN FAMILY MEMBER 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*AP*AP*A)-3'); COMPND 9 CHAIN: B, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LARP1, KIAA0731, LARP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS WINGED HELIX FOLD, RNA BINDING DOMAIN, RNA BINDING PROTEIN, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,K.GEHRING REVDAT 4 18-OCT-23 7SOR 1 REMARK REVDAT 3 23-NOV-22 7SOR 1 JRNL REVDAT 2 31-AUG-22 7SOR 1 JRNL REVDAT 1 03-AUG-22 7SOR 0 JRNL AUTH G.KOZLOV,S.MATTIJSSEN,J.JIANG,S.NYANDWI,T.SPRULES,J.R.IBEN, JRNL AUTH 2 S.L.COON,S.GAIDAMAKOV,A.M.NORONHA,C.J.WILDS,R.J.MARAIA, JRNL AUTH 3 K.GEHRING JRNL TITL STRUCTURAL BASIS OF 3'-END POLY(A) RNA RECOGNITION BY LARP1. JRNL REF NUCLEIC ACIDS RES. V. 50 9534 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 35979957 JRNL DOI 10.1093/NAR/GKAC696 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 42380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7200 - 3.3300 0.99 2840 169 0.1790 0.1842 REMARK 3 2 3.3300 - 2.6400 1.00 2759 139 0.1869 0.2133 REMARK 3 3 2.6400 - 2.3100 1.00 2734 127 0.1830 0.2125 REMARK 3 4 2.3100 - 2.1000 1.00 2707 146 0.1634 0.1890 REMARK 3 5 2.1000 - 1.9500 1.00 2674 151 0.1618 0.2023 REMARK 3 6 1.9500 - 1.8300 1.00 2695 158 0.1774 0.2140 REMARK 3 7 1.8300 - 1.7400 1.00 2659 149 0.1673 0.1759 REMARK 3 8 1.7400 - 1.6700 1.00 2687 136 0.1673 0.2038 REMARK 3 9 1.6700 - 1.6000 1.00 2652 139 0.1616 0.2139 REMARK 3 10 1.6000 - 1.5500 1.00 2668 136 0.1824 0.2230 REMARK 3 11 1.5500 - 1.5000 1.00 2657 130 0.2011 0.2196 REMARK 3 12 1.5000 - 1.4500 1.00 2668 127 0.2146 0.2391 REMARK 3 13 1.4500 - 1.4200 1.00 2656 142 0.2194 0.2831 REMARK 3 14 1.4200 - 1.3800 0.99 2633 146 0.2298 0.2394 REMARK 3 15 1.3800 - 1.3500 0.97 2563 133 0.2746 0.3165 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.147 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.701 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1650 REMARK 3 ANGLE : 1.584 2255 REMARK 3 CHIRALITY : 0.099 256 REMARK 3 PLANARITY : 0.014 267 REMARK 3 DIHEDRAL : 12.908 263 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 322 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8383 4.5662 8.1789 REMARK 3 T TENSOR REMARK 3 T11: 0.1992 T22: 0.1843 REMARK 3 T33: 0.1799 T12: 0.0272 REMARK 3 T13: 0.0429 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.2452 L22: 0.4350 REMARK 3 L33: 0.4383 L12: -0.1145 REMARK 3 L13: 0.1748 L23: -0.4295 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: -0.1438 S13: 0.0342 REMARK 3 S21: 0.2578 S22: -0.0714 S23: 0.3688 REMARK 3 S31: -0.0928 S32: -0.3133 S33: 0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 338 THROUGH 345 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2003 -9.2919 -1.3011 REMARK 3 T TENSOR REMARK 3 T11: 0.2146 T22: 0.1691 REMARK 3 T33: 0.1767 T12: -0.0039 REMARK 3 T13: -0.0212 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.0816 L22: 0.2420 REMARK 3 L33: 0.0554 L12: -0.0163 REMARK 3 L13: -0.0674 L23: 0.0168 REMARK 3 S TENSOR REMARK 3 S11: -0.0446 S12: 0.2171 S13: -0.1883 REMARK 3 S21: -0.5877 S22: -0.0500 S23: 0.2282 REMARK 3 S31: -0.0274 S32: -0.0782 S33: -0.0010 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 346 THROUGH 352 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3906 -11.1901 -1.5104 REMARK 3 T TENSOR REMARK 3 T11: 0.1984 T22: 0.1800 REMARK 3 T33: 0.2190 T12: 0.0049 REMARK 3 T13: 0.0481 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0611 L22: 0.0838 REMARK 3 L33: 0.0649 L12: 0.0242 REMARK 3 L13: 0.0034 L23: -0.0624 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: 0.2160 S13: -0.0086 REMARK 3 S21: -0.3619 S22: -0.1460 S23: -0.4792 REMARK 3 S31: 0.0156 S32: 0.2900 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 353 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8365 -3.2204 10.1336 REMARK 3 T TENSOR REMARK 3 T11: 0.1292 T22: 0.1437 REMARK 3 T33: 0.1203 T12: -0.0059 REMARK 3 T13: -0.0033 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.5981 L22: 1.1703 REMARK 3 L33: 0.3201 L12: 0.0122 REMARK 3 L13: 0.0491 L23: -0.1555 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: -0.0575 S13: -0.0302 REMARK 3 S21: 0.1003 S22: -0.0427 S23: -0.1490 REMARK 3 S31: -0.0283 S32: -0.0043 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 400 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6651 -16.7995 4.6722 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: 0.1740 REMARK 3 T33: 0.1973 T12: -0.0131 REMARK 3 T13: 0.0104 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.0863 L22: 0.3888 REMARK 3 L33: 0.5689 L12: 0.0133 REMARK 3 L13: 0.1358 L23: -0.2258 REMARK 3 S TENSOR REMARK 3 S11: 0.1295 S12: -0.2762 S13: -0.0992 REMARK 3 S21: -0.0796 S22: 0.0306 S23: -0.2802 REMARK 3 S31: 0.1036 S32: 0.1255 S33: 0.0175 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -3 THROUGH -1 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3327 -1.1358 -4.5471 REMARK 3 T TENSOR REMARK 3 T11: 0.3181 T22: 0.2332 REMARK 3 T33: 0.2076 T12: 0.0432 REMARK 3 T13: 0.0325 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 0.0498 L22: 0.0825 REMARK 3 L33: 0.0553 L12: -0.0324 REMARK 3 L13: -0.0315 L23: -0.0319 REMARK 3 S TENSOR REMARK 3 S11: 0.3587 S12: 0.4546 S13: -0.0677 REMARK 3 S21: -0.6869 S22: -0.3484 S23: 0.0429 REMARK 3 S31: -0.0573 S32: -0.2001 S33: -0.0017 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 322 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5338 -4.5306 8.3906 REMARK 3 T TENSOR REMARK 3 T11: 0.2392 T22: 0.1817 REMARK 3 T33: 0.2005 T12: 0.0381 REMARK 3 T13: -0.0585 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.1982 L22: 0.3723 REMARK 3 L33: 0.2204 L12: -0.0360 REMARK 3 L13: -0.1405 L23: 0.2435 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: -0.1303 S13: -0.0967 REMARK 3 S21: 0.2578 S22: -0.0249 S23: -0.3100 REMARK 3 S31: 0.1942 S32: 0.2622 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 338 THROUGH 345 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9146 9.5770 -0.7687 REMARK 3 T TENSOR REMARK 3 T11: 0.1400 T22: 0.1547 REMARK 3 T33: 0.1363 T12: -0.0072 REMARK 3 T13: 0.0086 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0467 L22: 0.0891 REMARK 3 L33: 0.0528 L12: -0.0171 REMARK 3 L13: 0.0280 L23: 0.0180 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: 0.0966 S13: -0.0794 REMARK 3 S21: -0.0924 S22: 0.0417 S23: -0.1043 REMARK 3 S31: 0.0299 S32: -0.0542 S33: 0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 346 THROUGH 352 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9357 11.1993 -1.2012 REMARK 3 T TENSOR REMARK 3 T11: 0.1344 T22: 0.1643 REMARK 3 T33: 0.1558 T12: -0.0002 REMARK 3 T13: -0.0162 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.0605 L22: 0.0917 REMARK 3 L33: 0.0935 L12: 0.0566 REMARK 3 L13: 0.0383 L23: 0.0929 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: 0.3589 S13: -0.0594 REMARK 3 S21: -0.3222 S22: -0.0939 S23: 0.2192 REMARK 3 S31: -0.0626 S32: -0.1314 S33: 0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 353 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3188 13.5577 9.1985 REMARK 3 T TENSOR REMARK 3 T11: 0.1559 T22: 0.1630 REMARK 3 T33: 0.1749 T12: -0.0161 REMARK 3 T13: 0.0253 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.0700 L22: 0.0464 REMARK 3 L33: 0.0497 L12: -0.0608 REMARK 3 L13: 0.0605 L23: -0.0481 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.0822 S13: -0.0805 REMARK 3 S21: 0.0167 S22: -0.0582 S23: 0.2034 REMARK 3 S31: -0.1289 S32: -0.0607 S33: 0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 361 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5330 -1.4559 4.3389 REMARK 3 T TENSOR REMARK 3 T11: 0.1630 T22: 0.1315 REMARK 3 T33: 0.1988 T12: 0.0094 REMARK 3 T13: -0.0444 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.1539 L22: 0.2159 REMARK 3 L33: 0.1238 L12: 0.0284 REMARK 3 L13: -0.0070 L23: -0.0608 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: 0.1538 S13: -0.0368 REMARK 3 S21: -0.2727 S22: -0.1418 S23: 0.4172 REMARK 3 S31: -0.0361 S32: -0.0234 S33: -0.0005 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 372 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4887 -4.8408 12.8063 REMARK 3 T TENSOR REMARK 3 T11: 0.3551 T22: 0.2054 REMARK 3 T33: 0.1759 T12: 0.0545 REMARK 3 T13: 0.0564 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.2783 L22: 1.4710 REMARK 3 L33: 0.3182 L12: -0.8574 REMARK 3 L13: 0.1384 L23: 0.4120 REMARK 3 S TENSOR REMARK 3 S11: -0.1020 S12: -0.2831 S13: -0.1885 REMARK 3 S21: 0.7156 S22: 0.2828 S23: 0.3486 REMARK 3 S31: -0.2320 S32: -0.0675 S33: 0.2617 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 385 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2039 7.9220 13.9687 REMARK 3 T TENSOR REMARK 3 T11: 0.1856 T22: 0.1759 REMARK 3 T33: 0.1294 T12: -0.0087 REMARK 3 T13: 0.0070 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 1.0928 L22: 0.3310 REMARK 3 L33: 0.2741 L12: -0.0288 REMARK 3 L13: -0.1403 L23: 0.2460 REMARK 3 S TENSOR REMARK 3 S11: 0.1158 S12: -0.1895 S13: 0.1385 REMARK 3 S21: 0.3462 S22: -0.0667 S23: -0.0156 REMARK 3 S31: 0.1063 S32: -0.0072 S33: -0.0079 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 400 THROUGH 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6815 16.3776 8.1346 REMARK 3 T TENSOR REMARK 3 T11: 0.0979 T22: 0.2211 REMARK 3 T33: 0.1224 T12: -0.0360 REMARK 3 T13: 0.0022 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.0011 L22: 0.8432 REMARK 3 L33: 1.8053 L12: -0.0440 REMARK 3 L13: -0.0594 L23: 1.2327 REMARK 3 S TENSOR REMARK 3 S11: 0.1133 S12: -0.1443 S13: 0.0863 REMARK 3 S21: -0.0860 S22: 0.1435 S23: -0.1751 REMARK 3 S31: -0.2929 S32: 0.3532 S33: 0.1322 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 406 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2735 17.0835 0.9507 REMARK 3 T TENSOR REMARK 3 T11: 0.1277 T22: 0.1702 REMARK 3 T33: 0.2152 T12: 0.0013 REMARK 3 T13: -0.0170 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.0760 L22: 0.0646 REMARK 3 L33: 0.0863 L12: 0.0266 REMARK 3 L13: -0.0360 L23: 0.0031 REMARK 3 S TENSOR REMARK 3 S11: 0.0805 S12: -0.1506 S13: 0.2096 REMARK 3 S21: -0.2064 S22: -0.0538 S23: 0.4708 REMARK 3 S31: 0.0926 S32: -0.3671 S33: -0.0001 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID -3 THROUGH -1 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8445 1.1617 -4.2411 REMARK 3 T TENSOR REMARK 3 T11: 0.2968 T22: 0.2135 REMARK 3 T33: 0.2357 T12: 0.0335 REMARK 3 T13: -0.0447 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 0.0304 L22: 0.0711 REMARK 3 L33: 0.0358 L12: -0.0018 REMARK 3 L13: -0.0257 L23: 0.0346 REMARK 3 S TENSOR REMARK 3 S11: 0.3984 S12: 0.3984 S13: 0.0242 REMARK 3 S21: -0.7074 S22: -0.2834 S23: 0.0322 REMARK 3 S31: 0.1316 S32: 0.1487 S33: -0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000260816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96860 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42380 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03900 REMARK 200 FOR THE DATA SET : 44.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.63300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7SOO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CHLORIDE, 0.1M BIS-TRIS PH REMARK 280 5.5, 25% PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.28100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.08600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.94500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.08600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.28100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.94500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 312 REMARK 465 GLY A 313 REMARK 465 SER A 314 REMARK 465 SER A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 MET C 312 REMARK 465 GLY C 313 REMARK 465 SER C 314 REMARK 465 SER C 315 REMARK 465 HIS C 316 REMARK 465 HIS C 317 REMARK 465 HIS C 318 REMARK 465 HIS C 319 REMARK 465 HIS C 320 REMARK 465 HIS C 321 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 385 CD CE NZ REMARK 470 ASP A 386 CG OD1 OD2 REMARK 470 LYS A 388 CE NZ REMARK 470 GLU A 404 CD OE1 OE2 REMARK 470 A B -3 O5' REMARK 470 ARG C 345 CD NE CZ NH1 NH2 REMARK 470 LYS C 385 CD CE NZ REMARK 470 ASP C 386 CG OD1 OD2 REMARK 470 LYS C 388 CE NZ REMARK 470 GLU C 404 CG CD OE1 OE2 REMARK 470 A D -3 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 324 O HOH A 601 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A B -3 C8 - N9 - C4 ANGL. DEV. = 2.7 DEGREES REMARK 500 A B -3 C4 - N9 - C1' ANGL. DEV. = -12.7 DEGREES REMARK 500 A B -2 O3' - P - OP2 ANGL. DEV. = 8.8 DEGREES REMARK 500 A D -3 N9 - C1' - C2' ANGL. DEV. = 7.8 DEGREES REMARK 500 A D -3 C8 - N9 - C4 ANGL. DEV. = 2.4 DEGREES REMARK 500 A D -3 C4 - N9 - C1' ANGL. DEV. = -13.4 DEGREES REMARK 500 A D -2 O3' - P - OP2 ANGL. DEV. = 10.2 DEGREES REMARK 500 A D -1 N7 - C8 - N9 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 394 -116.56 55.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7SOO RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT RNA BOUND REMARK 900 RELATED ID: 7SOP RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND AAAUAA RNA REMARK 900 RELATED ID: 7SOQ RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND AAA IN A DIFFERENT CRYSTAL FORM DBREF1 7SOR A 323 410 UNP LARP1-3_HUMAN DBREF2 7SOR A Q6PKG0-3 323 410 DBREF 7SOR B -3 -1 PDB 7SOR 7SOR -3 -1 DBREF1 7SOR C 323 410 UNP LARP1-3_HUMAN DBREF2 7SOR C Q6PKG0-3 323 410 DBREF 7SOR D -3 -1 PDB 7SOR 7SOR -3 -1 SEQADV 7SOR MET A 312 UNP Q6PKG0-3 INITIATING METHIONINE SEQADV 7SOR GLY A 313 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR SER A 314 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR SER A 315 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR HIS A 316 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR HIS A 317 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR HIS A 318 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR HIS A 319 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR HIS A 320 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR HIS A 321 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR SER A 322 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR MET C 312 UNP Q6PKG0-3 INITIATING METHIONINE SEQADV 7SOR GLY C 313 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR SER C 314 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR SER C 315 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR HIS C 316 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR HIS C 317 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR HIS C 318 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR HIS C 319 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR HIS C 320 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR HIS C 321 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOR SER C 322 UNP Q6PKG0-3 EXPRESSION TAG SEQRES 1 A 99 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN GLU SEQRES 2 A 99 LEU LEU LYS ASP TYR ILE LYS ARG GLN ILE GLU TYR TYR SEQRES 3 A 99 PHE SER VAL ASP ASN LEU GLU ARG ASP PHE PHE LEU ARG SEQRES 4 A 99 ARG LYS MET ASP ALA ASP GLY PHE LEU PRO ILE THR LEU SEQRES 5 A 99 ILE ALA SER PHE HIS ARG VAL GLN ALA LEU THR THR ASP SEQRES 6 A 99 ILE SER LEU ILE PHE ALA ALA LEU LYS ASP SER LYS VAL SEQRES 7 A 99 VAL GLU ILE VAL ASP GLU LYS VAL ARG ARG ARG GLU GLU SEQRES 8 A 99 PRO GLU LYS TRP PRO LEU PRO PRO SEQRES 1 B 3 A A A SEQRES 1 C 99 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN GLU SEQRES 2 C 99 LEU LEU LYS ASP TYR ILE LYS ARG GLN ILE GLU TYR TYR SEQRES 3 C 99 PHE SER VAL ASP ASN LEU GLU ARG ASP PHE PHE LEU ARG SEQRES 4 C 99 ARG LYS MET ASP ALA ASP GLY PHE LEU PRO ILE THR LEU SEQRES 5 C 99 ILE ALA SER PHE HIS ARG VAL GLN ALA LEU THR THR ASP SEQRES 6 C 99 ILE SER LEU ILE PHE ALA ALA LEU LYS ASP SER LYS VAL SEQRES 7 C 99 VAL GLU ILE VAL ASP GLU LYS VAL ARG ARG ARG GLU GLU SEQRES 8 C 99 PRO GLU LYS TRP PRO LEU PRO PRO SEQRES 1 D 3 A A A HET EDO A 501 4 HET CL A 502 1 HET EDO C 501 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO 2(C2 H6 O2) FORMUL 6 CL CL 1- FORMUL 8 HOH *157(H2 O) HELIX 1 AA1 SER A 322 PHE A 338 1 17 HELIX 2 AA2 SER A 339 GLU A 344 1 6 HELIX 3 AA3 ASP A 346 LYS A 352 1 7 HELIX 4 AA4 ILE A 361 PHE A 367 1 7 HELIX 5 AA5 PHE A 367 ALA A 372 1 6 HELIX 6 AA6 ASP A 376 LYS A 385 1 10 HELIX 7 AA7 GLU A 402 TRP A 406 5 5 HELIX 8 AA8 GLN C 323 PHE C 338 1 16 HELIX 9 AA9 SER C 339 ASP C 346 1 8 HELIX 10 AB1 ASP C 346 LYS C 352 1 7 HELIX 11 AB2 ILE C 361 SER C 366 1 6 HELIX 12 AB3 PHE C 367 ALA C 372 1 6 HELIX 13 AB4 ASP C 376 LYS C 385 1 10 HELIX 14 AB5 GLU C 402 TRP C 406 5 5 SHEET 1 AA1 3 LEU A 359 PRO A 360 0 SHEET 2 AA1 3 LYS A 396 ARG A 399 -1 O VAL A 397 N LEU A 359 SHEET 3 AA1 3 VAL A 390 VAL A 393 -1 N GLU A 391 O ARG A 398 SHEET 1 AA2 3 LEU C 359 PRO C 360 0 SHEET 2 AA2 3 LYS C 396 ARG C 399 -1 O VAL C 397 N LEU C 359 SHEET 3 AA2 3 VAL C 390 VAL C 393 -1 N GLU C 391 O ARG C 398 CRYST1 48.562 55.890 70.172 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020592 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017892 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014251 0.00000