HEADER RNA BINDING PROTEIN/RNA 01-NOV-21 7SOU TITLE LAM DOMAIN OF HUMAN LARP1 IN COMPLEX WITH AAAAAA POLYNUCLEOTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF LA-RELATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 323-410; COMPND 5 SYNONYM: LA RIBONUCLEOPROTEIN DOMAIN FAMILY MEMBER 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LARP1, KIAA0731, LARP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS WINGED HELIX FOLD, RNA BINDING DOMAIN, RNA BINDING PROTEIN, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,K.GEHRING REVDAT 4 18-OCT-23 7SOU 1 REMARK REVDAT 3 23-NOV-22 7SOU 1 JRNL REVDAT 2 31-AUG-22 7SOU 1 JRNL REVDAT 1 03-AUG-22 7SOU 0 JRNL AUTH G.KOZLOV,S.MATTIJSSEN,J.JIANG,S.NYANDWI,T.SPRULES,J.R.IBEN, JRNL AUTH 2 S.L.COON,S.GAIDAMAKOV,A.M.NORONHA,C.J.WILDS,R.J.MARAIA, JRNL AUTH 3 K.GEHRING JRNL TITL STRUCTURAL BASIS OF 3'-END POLY(A) RNA RECOGNITION BY LARP1. JRNL REF NUCLEIC ACIDS RES. V. 50 9534 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 35979957 JRNL DOI 10.1093/NAR/GKAC696 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 18268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3800 - 2.7700 0.98 2619 133 0.1821 0.1824 REMARK 3 2 2.7700 - 2.2000 0.98 2452 151 0.1892 0.2037 REMARK 3 3 2.2000 - 1.9200 1.00 2508 120 0.1792 0.2257 REMARK 3 4 1.9200 - 1.7500 1.00 2487 125 0.1759 0.2139 REMARK 3 5 1.7500 - 1.6200 0.99 2441 150 0.1787 0.2149 REMARK 3 6 1.6200 - 1.5300 0.99 2427 139 0.1846 0.2041 REMARK 3 7 1.5300 - 1.4500 0.97 2376 140 0.2041 0.2517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.138 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 824 REMARK 3 ANGLE : 1.885 1129 REMARK 3 CHIRALITY : 0.179 128 REMARK 3 PLANARITY : 0.017 135 REMARK 3 DIHEDRAL : 10.733 131 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 322 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0361 17.2898 33.0404 REMARK 3 T TENSOR REMARK 3 T11: 0.1312 T22: 0.1982 REMARK 3 T33: 0.1163 T12: -0.0122 REMARK 3 T13: -0.0057 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.1553 L22: 0.3496 REMARK 3 L33: 0.5232 L12: -0.2650 REMARK 3 L13: 0.2185 L23: -0.0045 REMARK 3 S TENSOR REMARK 3 S11: 0.0700 S12: -0.1191 S13: 0.0154 REMARK 3 S21: 0.2298 S22: -0.0181 S23: 0.1093 REMARK 3 S31: -0.1921 S32: 0.1308 S33: 0.0218 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 338 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7033 29.7668 23.7930 REMARK 3 T TENSOR REMARK 3 T11: 0.2112 T22: 0.1608 REMARK 3 T33: 0.1678 T12: -0.0753 REMARK 3 T13: -0.0408 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 0.0419 L22: 0.1798 REMARK 3 L33: 0.0167 L12: 0.0437 REMARK 3 L13: 0.0135 L23: -0.0080 REMARK 3 S TENSOR REMARK 3 S11: 0.0898 S12: -0.2043 S13: 0.1398 REMARK 3 S21: 0.3301 S22: -0.3359 S23: -0.2477 REMARK 3 S31: -0.5059 S32: 0.4439 S33: -0.0684 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 344 THROUGH 366 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7722 24.5355 17.4798 REMARK 3 T TENSOR REMARK 3 T11: 0.1411 T22: 0.1174 REMARK 3 T33: 0.1238 T12: -0.0038 REMARK 3 T13: -0.0059 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.5530 L22: 1.1242 REMARK 3 L33: 0.4258 L12: 0.0147 REMARK 3 L13: -0.2349 L23: -0.5971 REMARK 3 S TENSOR REMARK 3 S11: 0.0655 S12: 0.0858 S13: 0.1160 REMARK 3 S21: -0.2098 S22: -0.0630 S23: 0.1801 REMARK 3 S31: -0.0304 S32: 0.0661 S33: -0.0074 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 367 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9450 11.9614 24.6553 REMARK 3 T TENSOR REMARK 3 T11: 0.1115 T22: 0.1621 REMARK 3 T33: 0.1335 T12: 0.0015 REMARK 3 T13: -0.0004 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.2620 L22: 0.2959 REMARK 3 L33: 0.1926 L12: -0.3147 REMARK 3 L13: 0.0358 L23: -0.1562 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: 0.0706 S13: -0.1486 REMARK 3 S21: -0.0407 S22: -0.0218 S23: -0.0188 REMARK 3 S31: 0.1199 S32: -0.0778 S33: -0.0012 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8700 14.5108 30.7816 REMARK 3 T TENSOR REMARK 3 T11: 0.1023 T22: 0.1634 REMARK 3 T33: 0.1653 T12: -0.0109 REMARK 3 T13: -0.0157 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.2632 L22: 0.7403 REMARK 3 L33: 0.7262 L12: -0.4305 REMARK 3 L13: 0.0726 L23: -0.3479 REMARK 3 S TENSOR REMARK 3 S11: 0.2096 S12: -0.1783 S13: 0.2666 REMARK 3 S21: -0.1886 S22: 0.0521 S23: 0.3696 REMARK 3 S31: 0.2137 S32: 0.0770 S33: 0.0563 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 386 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4009 24.3304 30.9203 REMARK 3 T TENSOR REMARK 3 T11: 0.3321 T22: 0.2165 REMARK 3 T33: 0.1794 T12: -0.0379 REMARK 3 T13: 0.0412 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.3780 L22: 0.4598 REMARK 3 L33: 0.0897 L12: 0.0182 REMARK 3 L13: -0.1041 L23: -0.1758 REMARK 3 S TENSOR REMARK 3 S11: 0.3712 S12: -0.9436 S13: -0.1195 REMARK 3 S21: 0.9330 S22: -0.2023 S23: 0.5674 REMARK 3 S31: -0.0808 S32: -0.5876 S33: -0.0052 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 394 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6841 23.3929 23.8405 REMARK 3 T TENSOR REMARK 3 T11: 0.1655 T22: 0.1548 REMARK 3 T33: 0.2484 T12: -0.0103 REMARK 3 T13: 0.0160 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.2498 L22: 0.0407 REMARK 3 L33: 0.3968 L12: -0.0471 REMARK 3 L13: -0.3361 L23: -0.0184 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: 0.1929 S13: 0.4262 REMARK 3 S21: 0.0450 S22: 0.0273 S23: 0.6053 REMARK 3 S31: -0.3245 S32: -0.2691 S33: 0.0132 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 400 THROUGH 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2801 34.1125 25.0765 REMARK 3 T TENSOR REMARK 3 T11: 0.4263 T22: 0.1065 REMARK 3 T33: 0.3001 T12: 0.0155 REMARK 3 T13: 0.1337 T23: -0.0440 REMARK 3 L TENSOR REMARK 3 L11: 2.4850 L22: 0.0642 REMARK 3 L33: 0.7651 L12: 0.3709 REMARK 3 L13: 1.3741 L23: 0.2185 REMARK 3 S TENSOR REMARK 3 S11: 0.1632 S12: -0.4672 S13: 0.5626 REMARK 3 S21: 0.5584 S22: -0.1443 S23: -0.1158 REMARK 3 S31: 0.1083 S32: -0.3021 S33: 0.0968 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 406 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1213 31.2519 13.4822 REMARK 3 T TENSOR REMARK 3 T11: 0.2334 T22: 0.1546 REMARK 3 T33: 0.1589 T12: 0.0382 REMARK 3 T13: -0.0276 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.3263 L22: 0.5680 REMARK 3 L33: 0.5580 L12: 0.0100 REMARK 3 L13: -0.1035 L23: 0.2977 REMARK 3 S TENSOR REMARK 3 S11: 0.3341 S12: 0.2774 S13: -0.1933 REMARK 3 S21: -0.5147 S22: -0.2974 S23: 0.2741 REMARK 3 S31: -0.0015 S32: -0.5478 S33: 0.0186 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -3 THROUGH -1 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4986 20.3742 18.5957 REMARK 3 T TENSOR REMARK 3 T11: 0.2090 T22: 0.3342 REMARK 3 T33: 0.2303 T12: 0.0359 REMARK 3 T13: 0.0258 T23: 0.1417 REMARK 3 L TENSOR REMARK 3 L11: 0.6843 L22: 2.6970 REMARK 3 L33: 1.5903 L12: 0.0841 REMARK 3 L13: 0.8840 L23: 1.0518 REMARK 3 S TENSOR REMARK 3 S11: -0.1354 S12: 0.5901 S13: 0.7451 REMARK 3 S21: -0.7904 S22: -0.7268 S23: -0.3644 REMARK 3 S31: -0.5223 S32: 0.8947 S33: -0.5859 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SOU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000260838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96860 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18268 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7SOO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 25% PEG3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.43650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.45900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.45900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.43650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 312 REMARK 465 GLY A 313 REMARK 465 SER A 314 REMARK 465 SER A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 A B -6 REMARK 465 A B -5 REMARK 465 A B -4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 385 CE NZ REMARK 470 LYS A 388 CG CD CE NZ REMARK 470 GLU A 404 CG CD OE1 OE2 REMARK 470 LYS A 405 CE NZ REMARK 470 A B -3 P OP1 OP2 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 568 O HOH A 572 3555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A B -1 N3 A B -1 C4 -0.049 REMARK 500 A B -1 C8 A B -1 N9 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 354 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 A B -3 C4' - C3' - O3' ANGL. DEV. = -13.1 DEGREES REMARK 500 A B -3 O4' - C1' - C2' ANGL. DEV. = 5.5 DEGREES REMARK 500 A B -3 N9 - C1' - C2' ANGL. DEV. = 12.6 DEGREES REMARK 500 A B -3 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 A B -3 C5 - N7 - C8 ANGL. DEV. = -3.1 DEGREES REMARK 500 A B -3 N1 - C6 - N6 ANGL. DEV. = 4.5 DEGREES REMARK 500 A B -1 C2 - N3 - C4 ANGL. DEV. = -3.5 DEGREES REMARK 500 A B -1 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 A B -1 C8 - N9 - C4 ANGL. DEV. = -5.2 DEGREES REMARK 500 A B -1 N9 - C4 - C5 ANGL. DEV. = 4.3 DEGREES REMARK 500 A B -1 N3 - C4 - N9 ANGL. DEV. = -7.7 DEGREES REMARK 500 A B -1 C4 - N9 - C1' ANGL. DEV. = 11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 394 -116.19 53.93 REMARK 500 GLU A 402 51.14 39.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7SOO RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT RNA BOUND REMARK 900 RELATED ID: 7SOP RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND AAAUAA RNA REMARK 900 RELATED ID: 7SOQ RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND AAA RNA REMARK 900 RELATED ID: 7SOR RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND AAA RNA IN A DIFFERENT CRYSTAL FORM REMARK 900 RELATED ID: 7SOS RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND AAAA RNA REMARK 900 RELATED ID: 7SOT RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND AAAAAA RNA IN A DIFFERENT RNA CONFORMATION DBREF1 7SOU A 323 410 UNP LARP1-3_HUMAN DBREF2 7SOU A Q6PKG0-3 323 410 DBREF 7SOU B -6 -1 PDB 7SOU 7SOU -6 -1 SEQADV 7SOU MET A 312 UNP Q6PKG0-3 INITIATING METHIONINE SEQADV 7SOU GLY A 313 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOU SER A 314 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOU SER A 315 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOU HIS A 316 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOU HIS A 317 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOU HIS A 318 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOU HIS A 319 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOU HIS A 320 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOU HIS A 321 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOU SER A 322 UNP Q6PKG0-3 EXPRESSION TAG SEQRES 1 A 99 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN GLU SEQRES 2 A 99 LEU LEU LYS ASP TYR ILE LYS ARG GLN ILE GLU TYR TYR SEQRES 3 A 99 PHE SER VAL ASP ASN LEU GLU ARG ASP PHE PHE LEU ARG SEQRES 4 A 99 ARG LYS MET ASP ALA ASP GLY PHE LEU PRO ILE THR LEU SEQRES 5 A 99 ILE ALA SER PHE HIS ARG VAL GLN ALA LEU THR THR ASP SEQRES 6 A 99 ILE SER LEU ILE PHE ALA ALA LEU LYS ASP SER LYS VAL SEQRES 7 A 99 VAL GLU ILE VAL ASP GLU LYS VAL ARG ARG ARG GLU GLU SEQRES 8 A 99 PRO GLU LYS TRP PRO LEU PRO PRO SEQRES 1 B 6 A A A A A A FORMUL 3 HOH *93(H2 O) HELIX 1 AA1 GLN A 323 PHE A 338 1 16 HELIX 2 AA2 SER A 339 GLU A 344 1 6 HELIX 3 AA3 ASP A 346 LYS A 352 1 7 HELIX 4 AA4 ILE A 361 PHE A 367 1 7 HELIX 5 AA5 PHE A 367 THR A 374 1 8 HELIX 6 AA6 ASP A 376 ASP A 386 1 11 HELIX 7 AA7 GLU A 402 TRP A 406 5 5 SHEET 1 AA1 3 LEU A 359 PRO A 360 0 SHEET 2 AA1 3 LYS A 396 ARG A 399 -1 O VAL A 397 N LEU A 359 SHEET 3 AA1 3 VAL A 390 VAL A 393 -1 N VAL A 393 O LYS A 396 CRYST1 36.873 46.260 58.918 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027120 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016973 0.00000