HEADER DNA BINDING PROTEIN/DNA 01-NOV-21 7SOZ TITLE REPLICATION INITIATOR PROTEIN REPE54 AND COGNATE DNA SEQUENCE WITH TITLE 2 TERMINAL THREE PRIME PHOSPHATES CHEMICALLY CROSSLINKED (5 MG/ML EDC, TITLE 3 12 HOURS). COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*A)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*A)- COMPND 10 3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: REPB FAMILY PLASMID REPLICATION INITIATOR PROTEIN; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: REPE,REPE PROTEIN,REPLICATION INITIATION PROTEIN,REPLICATION COMPND 17 INITIATION PROTEIN FIA,REPLICATION INITIATION PROTEIN REPE, COMPND 18 REPLICATION INITIATION PROTEIN OF REPFIA,FIA,FIA REPLICON,REPLICATION COMPND 19 PROTEIN; COMPND 20 ENGINEERED: YES; COMPND 21 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: REPE, REPE, REPE_1, REPE_2, A9P13_27925, ACN81_13795, SOURCE 13 AKG29_00005, AM270_25025, AM446_00510, AM465_27515, APX88_12585, SOURCE 14 B9N33_25510, BANRA_05159, BANRA_05459, BANRA_05682, BANRA_05685, SOURCE 15 BE930_02070, BE963_00170, BFD68_26000, BIU72_26315, BK334_12915, SOURCE 16 BON69_00085, BON86_02490, BTQ06_15345, BVCMSKSNP073_00547, SOURCE 17 BVCMSKSNP081_03109, C5F73_28740, C6669_28055, CCZ17_26065, SOURCE 18 CDL37_25390, CUB99_27055, D0X26_27580, D2188_23935, D6C57_20535, SOURCE 19 D6T60_26250, D9G11_25395, D9J60_24770, DL545_01395, DLU82_26460, SOURCE 20 DM102_26130, DMZ50_25125, DN808_25760, DNQ45_17165, DP277_27365, SOURCE 21 E0L04_25075, E4K51_24545, E5P24_21725, E5S56_18100, EA191_27055, SOURCE 22 EA214_24280, EA233_23655, EA834_24495, EC3234A_223C00190, SOURCE 23 ECTO124_05352, EGT48_00285, EIZ93_24320, EJC75_00275, ELT22_23490, SOURCE 24 ELT31_24090, ELT31_26285, ELT33_22145, ELU82_24155, ELU85_22525, SOURCE 25 ELV00_24275, ELV13_22345, ELV22_21715, ELV22_26415, ELV24_23180, SOURCE 26 ELV24_26400, ELX56_23450, ELX56_26570, ELX68_22815, ELX68_25985, SOURCE 27 ELX70_23725, ELX70_27680, ELX79_25360, ELX79_27900, ELX83_21670, SOURCE 28 ELX83_26905, ELY23_22635, ELY23_25820, ELY24_18745, ELY24_28685, SOURCE 29 ELY48_20420, ELY48_27905, ELY50_22820, ELY50_26360, EPS70_23590, SOURCE 30 EQ823_22980, EQ830_17775, ERS085362_04815, ERS150873_04643, SOURCE 31 EVY14_01415, EXPECSC065_01123, F0L67_01685, F7O57_26240, SOURCE 32 FAF34_003215, FKO60_21690, FVA71_27640, G3565_27065, G4276_24945, SOURCE 33 G4280_26215, G5603_23890, G5632_20220, G5697_22865, G5V60_25015, SOURCE 34 GE057_22565, GE087_25865, GE096_23180, GE400_25540, GE558_24730, SOURCE 35 GKE29_21080, GKE58_20235, GKE60_20510, GKE79_19945, GKE87_19350, SOURCE 36 GQY14_24020, GRC73_23425, HGR17_18615, HGR87_25030, HGR88_23710, SOURCE 37 HGS97_17250, HH117_25695, HH456_004544, HH814_004957, HIO03_005020, SOURCE 38 HIZ44_004944, HJ359_004520, HJI79_004024, HJL93_004672, SOURCE 39 HJM89_004053, HJT66_004466, HKA14_004545, HL186_24195, HLI97_004832, SOURCE 40 HMT01_25475, HMT08_23785, HNV94_24925, HNX16_24825, HNX34_21985, SOURCE 41 HPE39_26560, HR075_24855, HV055_25390, HV303_25935, HVW09_26465, SOURCE 42 HVW60_23575, HVW98_24555, HVX24_22925, HVX51_24935, HVY93_24645, SOURCE 43 HVZ71_26895, IB283_25495, IPF_37, PCTXM15_EC8_00107, RCS105_PI0165, SOURCE 44 RCS57_P0140, RCS59_P0063, SAMEA4370330_00165, SAMEA4370365_00054, SOURCE 45 SY51_26335, WP4S17E03_P11650, WP4S18E08_P10410, YDC107_5106; SOURCE 46 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 47 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REPLICATION INITIATOR REPE COMPLEX CO-CRYSTAL, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.R.WARD,C.D.SNOW REVDAT 3 01-NOV-23 7SOZ 1 JRNL REVDAT 2 18-OCT-23 7SOZ 1 REMARK REVDAT 1 10-NOV-21 7SOZ 0 JRNL AUTH A.R.ORUN,E.T.SHIELDS,S.DMYTRIW,A.VAJAPAYAJULA,C.K.SLAUGHTER, JRNL AUTH 2 C.D.SNOW JRNL TITL MODULAR PROTEIN-DNA COCRYSTALS AS PRECISE, PROGRAMMABLE JRNL TITL 2 ASSEMBLY SCAFFOLDS. JRNL REF ACS NANO V. 17 13110 2023 JRNL REFN ESSN 1936-086X JRNL PMID 37407546 JRNL DOI 10.1021/ACSNANO.2C07282 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 3.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 9289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.360 REMARK 3 FREE R VALUE TEST SET COUNT : 498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0500 - 4.9800 0.97 2272 121 0.1574 0.2150 REMARK 3 2 4.9800 - 3.9600 0.98 2249 122 0.1987 0.2780 REMARK 3 3 3.9600 - 3.4600 0.96 2176 140 0.2339 0.3254 REMARK 3 4 3.4600 - 3.1400 0.92 2094 115 0.2718 0.3311 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.381 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 109.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2835 REMARK 3 ANGLE : 1.480 4013 REMARK 3 CHIRALITY : 0.080 438 REMARK 3 PLANARITY : 0.009 365 REMARK 3 DIHEDRAL : 25.745 669 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6029 -28.2969 14.0701 REMARK 3 T TENSOR REMARK 3 T11: 0.8209 T22: 1.1787 REMARK 3 T33: 1.1095 T12: 0.3431 REMARK 3 T13: 0.0796 T23: 0.1504 REMARK 3 L TENSOR REMARK 3 L11: 3.3522 L22: 5.3833 REMARK 3 L33: 5.5731 L12: 3.4531 REMARK 3 L13: 2.8189 L23: 0.4844 REMARK 3 S TENSOR REMARK 3 S11: -0.1448 S12: 1.1558 S13: -0.7048 REMARK 3 S21: 0.2518 S22: -0.0475 S23: 0.7148 REMARK 3 S31: 0.8934 S32: 0.8828 S33: 0.1867 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8747 -7.1368 15.4862 REMARK 3 T TENSOR REMARK 3 T11: 0.9686 T22: 1.3733 REMARK 3 T33: 1.5445 T12: 0.4443 REMARK 3 T13: 0.1617 T23: 0.4510 REMARK 3 L TENSOR REMARK 3 L11: 4.7451 L22: 2.7842 REMARK 3 L33: 3.4396 L12: -3.2462 REMARK 3 L13: -3.8300 L23: 3.0607 REMARK 3 S TENSOR REMARK 3 S11: -0.6074 S12: -0.2612 S13: -2.1813 REMARK 3 S21: 0.4966 S22: 0.0743 S23: 1.9023 REMARK 3 S31: -0.8167 S32: -1.1128 S33: 0.3415 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9088 2.0365 16.0485 REMARK 3 T TENSOR REMARK 3 T11: 1.2921 T22: 1.8455 REMARK 3 T33: 1.6913 T12: 0.9385 REMARK 3 T13: 0.4263 T23: 0.5966 REMARK 3 L TENSOR REMARK 3 L11: 0.1845 L22: 0.0312 REMARK 3 L33: 0.2782 L12: 0.0587 REMARK 3 L13: -0.0242 L23: 0.0163 REMARK 3 S TENSOR REMARK 3 S11: 0.1554 S12: 0.2085 S13: -0.2416 REMARK 3 S21: -0.1044 S22: -0.1022 S23: 0.3198 REMARK 3 S31: -0.0108 S32: -0.0220 S33: -0.0998 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0293 -15.7176 16.4468 REMARK 3 T TENSOR REMARK 3 T11: 0.9990 T22: 1.4370 REMARK 3 T33: 2.1602 T12: 0.4087 REMARK 3 T13: 0.2634 T23: 0.4291 REMARK 3 L TENSOR REMARK 3 L11: 8.4268 L22: 8.8776 REMARK 3 L33: 5.7841 L12: 1.6862 REMARK 3 L13: -3.5891 L23: 3.3832 REMARK 3 S TENSOR REMARK 3 S11: -0.3062 S12: 0.4621 S13: -2.1166 REMARK 3 S21: 0.0363 S22: -0.0951 S23: 0.6895 REMARK 3 S31: -0.5286 S32: -2.1157 S33: 0.3717 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3413 -19.7050 13.4696 REMARK 3 T TENSOR REMARK 3 T11: 0.7926 T22: 1.1601 REMARK 3 T33: 1.1595 T12: 0.2779 REMARK 3 T13: 0.1769 T23: 0.1252 REMARK 3 L TENSOR REMARK 3 L11: 6.3744 L22: 6.6552 REMARK 3 L33: 2.2756 L12: -0.4915 REMARK 3 L13: 3.3271 L23: -2.0599 REMARK 3 S TENSOR REMARK 3 S11: -0.4588 S12: 0.3478 S13: -1.4812 REMARK 3 S21: 0.3807 S22: -0.2798 S23: 1.7612 REMARK 3 S31: 1.5773 S32: 1.3219 S33: 0.8380 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.8457 -34.4252 14.4496 REMARK 3 T TENSOR REMARK 3 T11: 1.0917 T22: 1.4116 REMARK 3 T33: 1.6035 T12: 0.6209 REMARK 3 T13: 0.2164 T23: 0.2294 REMARK 3 L TENSOR REMARK 3 L11: 5.1754 L22: 1.6832 REMARK 3 L33: 5.0950 L12: -2.4743 REMARK 3 L13: -5.0692 L23: 2.6783 REMARK 3 S TENSOR REMARK 3 S11: -0.8677 S12: -0.5792 S13: -2.0034 REMARK 3 S21: 1.0779 S22: 0.7839 S23: 0.4092 REMARK 3 S31: 1.0188 S32: 1.0782 S33: -0.0492 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 12 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3229 5.6713 13.8109 REMARK 3 T TENSOR REMARK 3 T11: 0.9603 T22: 1.0367 REMARK 3 T33: 0.5544 T12: 0.2823 REMARK 3 T13: 0.2055 T23: 0.3609 REMARK 3 L TENSOR REMARK 3 L11: 4.0455 L22: 3.3739 REMARK 3 L33: 2.7382 L12: 0.3639 REMARK 3 L13: 0.5905 L23: -1.1035 REMARK 3 S TENSOR REMARK 3 S11: 0.2792 S12: 1.1987 S13: 1.1408 REMARK 3 S21: 0.0118 S22: 0.4449 S23: 0.8948 REMARK 3 S31: -0.9140 S32: -0.2444 S33: -0.6459 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7237 6.1940 24.6845 REMARK 3 T TENSOR REMARK 3 T11: 1.0750 T22: 1.0645 REMARK 3 T33: 0.5164 T12: 0.3966 REMARK 3 T13: 0.4175 T23: 0.0966 REMARK 3 L TENSOR REMARK 3 L11: 6.1452 L22: 4.0373 REMARK 3 L33: 6.2261 L12: 1.5809 REMARK 3 L13: 5.2425 L23: -0.6065 REMARK 3 S TENSOR REMARK 3 S11: 0.0939 S12: -1.1296 S13: 0.6045 REMARK 3 S21: 0.1008 S22: -0.1992 S23: -0.0815 REMARK 3 S31: -1.0769 S32: 0.2755 S33: 0.1280 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 133 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1507 -3.2216 10.4489 REMARK 3 T TENSOR REMARK 3 T11: 0.7211 T22: 1.0649 REMARK 3 T33: 0.3726 T12: 0.1929 REMARK 3 T13: 0.0800 T23: 0.2299 REMARK 3 L TENSOR REMARK 3 L11: 3.4175 L22: 1.4974 REMARK 3 L33: 5.0427 L12: 0.1189 REMARK 3 L13: -1.8464 L23: 2.3271 REMARK 3 S TENSOR REMARK 3 S11: 0.4124 S12: 0.2512 S13: 0.2469 REMARK 3 S21: -0.1195 S22: -0.0893 S23: 0.1385 REMARK 3 S31: -0.7830 S32: 0.8070 S33: -0.2110 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.9205 -10.9308 1.7546 REMARK 3 T TENSOR REMARK 3 T11: 0.8476 T22: 1.5357 REMARK 3 T33: 0.3657 T12: 0.2614 REMARK 3 T13: 0.0123 T23: 0.1263 REMARK 3 L TENSOR REMARK 3 L11: 0.8597 L22: 3.1401 REMARK 3 L33: 1.2979 L12: 1.0355 REMARK 3 L13: -0.4511 L23: 0.8724 REMARK 3 S TENSOR REMARK 3 S11: -0.1971 S12: 0.9221 S13: 0.2168 REMARK 3 S21: -0.5321 S22: 0.0548 S23: 0.5791 REMARK 3 S31: -0.2847 S32: -0.2036 S33: 0.0089 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000260068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 31, 2020 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 31, 2020, SCALA REMARK 200 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9433 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.140 REMARK 200 RESOLUTION RANGE LOW (A) : 37.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.40800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 7RVA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 90 MM MGCL2, 3% PEG 400, AND 220 MM REMARK 280 TRIS HCL., PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.99650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.59050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.99650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.59050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA A 22 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA A 22 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA A 22 C2 N3 C4 REMARK 470 DA B 44 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA B 44 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA B 44 C2 N3 C4 REMARK 470 ARG C 12 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 13 CG CD CE NZ REMARK 470 ARG C 47 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 50 CG OD1 OD2 REMARK 470 GLU C 55 CG CD OE1 OE2 REMARK 470 LYS C 87 CD CE NZ REMARK 470 LYS C 107 CG CD CE NZ REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ASN C 144 CG OD1 ND2 REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 243 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT A 12 O3' DT A 12 C3' -0.037 REMARK 500 DT A 13 O3' DT A 13 C3' -0.055 REMARK 500 DG B 25 O3' DG B 25 C3' -0.040 REMARK 500 DA B 26 O3' DA B 26 C3' -0.041 REMARK 500 DG B 28 O3' DG B 28 C3' -0.037 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 12 O3' - P - OP1 ANGL. DEV. = 8.4 DEGREES REMARK 500 DT A 12 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC A 15 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC A 17 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC B 23 O4' - C4' - C3' ANGL. DEV. = -3.8 DEGREES REMARK 500 DG B 25 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC B 38 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG B 43 C1' - O4' - C4' ANGL. DEV. = -7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 13 -17.02 -141.26 REMARK 500 SER C 21 137.57 -39.34 REMARK 500 TYR C 109 111.64 -166.87 REMARK 500 PHE C 208 -62.47 -104.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 101 O REMARK 620 2 GLU C 77 OE2 84.0 REMARK 620 3 ASP C 81 OD1 102.2 108.4 REMARK 620 4 HOH C 401 O 60.3 120.6 47.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7RVA RELATED DB: PDB REMARK 900 7RVA CONTAINS THE SAME PROTEIN COMPLEXED WITH SIMILAR DSDNA. 7RVA REMARK 900 WAS THE STARTING MODEL FOR MOLECULAR REPLACEMENT. REMARK 900 RELATED ID: 7SGC RELATED DB: PDB REMARK 900 7SGC CONTAINS THE SAME PROTEIN COMPLEXED WITH SIMILAR DSDNA. REMARK 900 RELATED ID: 7SDP RELATED DB: PDB REMARK 900 7SDP CONTAINS THE SAME PROTEIN COMPLEXED WITH THE SAME DSDNA. DBREF 7SOZ A 1 22 PDB 7SOZ 7SOZ 1 22 DBREF 7SOZ B 23 44 PDB 7SOZ 7SOZ 23 44 DBREF 7SOZ C 1 251 UNP Q0E856 Q0E856_ECOLX 1 251 SEQADV 7SOZ MET C -11 UNP Q0E856 INITIATING METHIONINE SEQADV 7SOZ ARG C -10 UNP Q0E856 EXPRESSION TAG SEQADV 7SOZ GLY C -9 UNP Q0E856 EXPRESSION TAG SEQADV 7SOZ SER C -8 UNP Q0E856 EXPRESSION TAG SEQADV 7SOZ HIS C -7 UNP Q0E856 EXPRESSION TAG SEQADV 7SOZ HIS C -6 UNP Q0E856 EXPRESSION TAG SEQADV 7SOZ HIS C -5 UNP Q0E856 EXPRESSION TAG SEQADV 7SOZ HIS C -4 UNP Q0E856 EXPRESSION TAG SEQADV 7SOZ HIS C -3 UNP Q0E856 EXPRESSION TAG SEQADV 7SOZ HIS C -2 UNP Q0E856 EXPRESSION TAG SEQADV 7SOZ GLY C -1 UNP Q0E856 EXPRESSION TAG SEQADV 7SOZ SER C 0 UNP Q0E856 EXPRESSION TAG SEQADV 7SOZ PRO C 118 UNP Q0E856 ARG 118 ENGINEERED MUTATION SEQRES 1 A 22 DC DC DT DG DT DG DA DC DA DA DA DT DT SEQRES 2 A 22 DG DC DC DC DT DC DA DG DA SEQRES 1 B 22 DC DT DG DA DG DG DG DC DA DA DT DT DT SEQRES 2 B 22 DG DT DC DA DC DA DG DG DA SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET MG C 301 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG MG 2+ FORMUL 5 HOH *3(H2 O) HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 HIS C 63 PHE C 71 1 9 HELIX 4 AA4 THR C 74 SER C 88 1 15 HELIX 5 AA5 ILE C 136 GLY C 141 1 6 HELIX 6 AA6 LEU C 151 LYS C 155 1 5 HELIX 7 AA7 ASN C 159 TYR C 172 1 14 HELIX 8 AA8 ILE C 185 GLN C 193 1 9 HELIX 9 AA9 PRO C 195 GLN C 199 5 5 HELIX 10 AB1 ARG C 200 PHE C 208 1 9 HELIX 11 AB2 PHE C 208 ARG C 219 1 12 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 GLU C 61 0 SHEET 2 AA2 3 SER C 128 ILE C 131 -1 O VAL C 129 N CYS C 60 SHEET 3 AA2 3 PHE C 115 HIS C 120 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 TYR C 97 0 SHEET 2 AA3 2 TYR C 109 PRO C 113 -1 O PHE C 112 N VAL C 94 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O PHE C 240 N VAL C 181 SHEET 3 AA4 3 MET C 222 SER C 225 -1 N ARG C 223 O ARG C 243 SHEET 1 AA5 3 GLY C 179 LYS C 184 0 SHEET 2 AA5 3 GLN C 234 ASP C 244 -1 O PHE C 240 N VAL C 181 SHEET 3 AA5 3 GLU C 228 LYS C 231 -1 N LYS C 231 O GLN C 234 LINK O HOH A 101 MG MG C 301 1555 1555 2.56 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.29 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.92 LINK MG MG C 301 O HOH C 401 1555 1555 2.51 CRYST1 111.993 79.181 74.903 90.00 123.02 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008929 0.000000 0.005804 0.00000 SCALE2 0.000000 0.012629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015923 0.00000