HEADER CELL ADHESION 02-NOV-21 7SP2 TITLE STRUCTURE OF PLS A-DOMAIN (RESIDUES 391-656; 513-518 DELETION MUTANT) TITLE 2 FROM STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMIN SENSITIVE PROTEIN PLS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: A DOMAIN (UNP RESIDUES 391-656); COMPND 5 SYNONYM: 230 KDA CELL-WALL PROTEIN,SURFACE PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: PLS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CELL ADHESION, L-TYPE LECTIN EXPDTA X-RAY DIFFRACTION AUTHOR L.CLARK,F.WHELAN,K.E.ATKIN,A.S.BRENTNALL,E.J.DODSON,J.P.TURKENBURG, AUTHOR 2 J.R.POTTS REVDAT 3 25-OCT-23 7SP2 1 REMARK REVDAT 2 31-MAY-23 7SP2 1 JRNL REVDAT 1 09-NOV-22 7SP2 0 JRNL AUTH L.CLARK,F.WHELAN,K.E.ATKIN,A.S.BRENTNALL,E.J.DODSON, JRNL AUTH 2 J.P.TURKENBURG,J.R.POTTS JRNL TITL STRUCTURE OF PLS A-DOMAIN (RESIDUES 391-65) FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS JRNL REF NOT PUBLISHED REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 397 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 550 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1972 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.342 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.275 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.930 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2015 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1825 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2722 ; 1.944 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4187 ; 1.551 ; 1.596 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 257 ; 8.870 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;36.307 ;25.794 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 321 ;16.538 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;20.136 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2407 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 485 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6755 -4.1316 24.5892 REMARK 3 T TENSOR REMARK 3 T11: 0.0366 T22: 0.1136 REMARK 3 T33: 0.0363 T12: -0.0305 REMARK 3 T13: -0.0226 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.5317 L22: 2.7900 REMARK 3 L33: 2.9453 L12: 0.5698 REMARK 3 L13: 0.0687 L23: -0.4272 REMARK 3 S TENSOR REMARK 3 S11: -0.1935 S12: 0.2913 S13: -0.0292 REMARK 3 S21: -0.2355 S22: 0.0784 S23: 0.1271 REMARK 3 S31: -0.0413 S32: -0.3412 S33: 0.1151 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7SP2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000260419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8201 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 56.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 23.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 24.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 7SJK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V PEG3350, 0.1 M HEPES, PH 7.5, REMARK 280 0.2 M LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.60500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.60500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.60500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.60500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 48.60500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 48.60500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 48.60500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 48.60500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 48.60500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 48.60500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 48.60500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 48.60500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 48.60500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 48.60500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 48.60500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 48.60500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 ALA A 3 REMARK 465 MET A 4 REMARK 465 GLN A 5 REMARK 465 ASP A 264 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 13 -90.33 26.70 REMARK 500 ASN A 41 17.39 80.41 REMARK 500 ARG A 106 -151.38 -128.61 REMARK 500 ASN A 112 -1.42 72.47 REMARK 500 ASN A 123 -13.75 -141.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 300 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 119 OD1 REMARK 620 2 ASP A 119 OD2 54.7 REMARK 620 3 ALA A 121 O 70.7 122.4 REMARK 620 4 ASN A 123 OD1 129.6 149.8 79.3 REMARK 620 5 ASP A 127 OD1 96.0 78.9 91.2 124.7 REMARK 620 6 ASP A 127 OD2 136.5 130.0 78.6 70.7 54.1 REMARK 620 7 HOH A 403 O 75.8 75.2 109.7 77.7 152.7 145.3 REMARK 620 8 HOH A 404 O 139.8 90.7 146.8 69.9 96.3 80.0 75.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7SJK RELATED DB: PDB REMARK 900 WILD TYPE A DOMAIN OF S. AUREUS PLS REMARK 900 RELATED ID: 7SMH RELATED DB: PDB REMARK 900 A DOMAIN OF S. AUREUS SASG REMARK 900 RELATED ID: 7SIE RELATED DB: PDB REMARK 900 A DOMAIN OF S. EPIDERMIDIS AAP DBREF 7SP2 A 5 264 UNP P80544 PLS_STAAU 391 656 SEQADV 7SP2 GLY A 1 UNP P80544 EXPRESSION TAG SEQADV 7SP2 PRO A 2 UNP P80544 EXPRESSION TAG SEQADV 7SP2 ALA A 3 UNP P80544 EXPRESSION TAG SEQADV 7SP2 MET A 4 UNP P80544 EXPRESSION TAG SEQADV 7SP2 A UNP P80544 GLY 513 DELETION SEQADV 7SP2 A UNP P80544 LYS 514 DELETION SEQADV 7SP2 A UNP P80544 VAL 515 DELETION SEQADV 7SP2 A UNP P80544 ASP 516 DELETION SEQADV 7SP2 A UNP P80544 LYS 517 DELETION SEQADV 7SP2 A UNP P80544 LEU 518 DELETION SEQRES 1 A 264 GLY PRO ALA MET GLN ASP THR VAL THR LYS LYS GLY THR SEQRES 2 A 264 GLY ASN PHE THR ALA HIS GLY ASP ILE ILE HIS LYS THR SEQRES 3 A 264 TYR LYS GLU GLU PHE PRO ASN GLU GLY THR LEU THR ALA SEQRES 4 A 264 PHE ASN THR ASN PHE ASN PRO ASN THR GLY THR LYS GLY SEQRES 5 A 264 ALA LEU GLU TYR ASN ASP LYS ILE ASP PHE ASN LYS ASP SEQRES 6 A 264 PHE THR ILE THR VAL PRO VAL ALA ASN ASN ASN GLN GLY SEQRES 7 A 264 ASN THR THR GLY ALA ASP GLY TRP GLY PHE MET PHE THR SEQRES 8 A 264 GLN GLY ASN GLY GLN ASP PHE LEU ASN GLN GLY GLY ILE SEQRES 9 A 264 LEU ARG ASP LYS GLY MET ALA ASN ALA SER GLY PHE LYS SEQRES 10 A 264 ILE ASP THR ALA TYR ASN ASN VAL ASN ASP ALA ASP LYS SEQRES 11 A 264 THR ASN ASN LEU SER GLN ILE GLY ALA ALA LYS VAL GLY SEQRES 12 A 264 TYR GLY THR PHE VAL LYS ASN GLY ALA ASP GLY VAL THR SEQRES 13 A 264 ASN GLN VAL GLY GLN ASN ALA LEU ASN THR LYS ASP LYS SEQRES 14 A 264 PRO VAL ASN LYS ILE ILE TYR ALA ASP ASN THR THR ASN SEQRES 15 A 264 HIS LEU ASP GLY GLN PHE HIS GLY GLN ARG LEU ASN ASP SEQRES 16 A 264 VAL VAL LEU ASN TYR ASP ALA ALA THR SER THR ILE THR SEQRES 17 A 264 ALA THR TYR ALA GLY LYS THR TRP LYS ALA THR THR ASP SEQRES 18 A 264 ASP LEU GLY ILE ASP LYS SER GLN LYS TYR ASN PHE LEU SEQRES 19 A 264 ILE THR SER SER HIS MET GLN ASN ARG TYR SER ASN GLY SEQRES 20 A 264 ILE MET ARG THR ASN LEU GLU GLY VAL THR ILE THR THR SEQRES 21 A 264 PRO GLN ALA ASP HET CA A 300 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *7(H2 O) HELIX 1 AA1 ASN A 94 GLY A 102 1 9 HELIX 2 AA2 ASN A 124 ASP A 129 5 6 HELIX 3 AA3 ALA A 202 THR A 204 5 3 HELIX 4 AA4 THR A 220 GLY A 224 1 5 HELIX 5 AA5 LEU A 253 GLY A 255 5 3 SHEET 1 AA1 6 THR A 7 LYS A 11 0 SHEET 2 AA1 6 THR A 257 PRO A 261 -1 O ILE A 258 N LYS A 10 SHEET 3 AA1 6 PHE A 66 ALA A 73 -1 N THR A 67 O THR A 259 SHEET 4 AA1 6 MET A 249 THR A 251 -1 O ARG A 250 N ALA A 73 SHEET 5 AA1 6 LEU A 37 PHE A 40 -1 N PHE A 40 O MET A 249 SHEET 6 AA1 6 ILE A 22 LYS A 25 -1 N ILE A 23 O ALA A 39 SHEET 1 AA2 6 THR A 7 LYS A 11 0 SHEET 2 AA2 6 THR A 257 PRO A 261 -1 O ILE A 258 N LYS A 10 SHEET 3 AA2 6 PHE A 66 ALA A 73 -1 N THR A 67 O THR A 259 SHEET 4 AA2 6 ASN A 194 ASP A 201 -1 O TYR A 200 N PHE A 66 SHEET 5 AA2 6 THR A 206 TYR A 211 -1 O THR A 208 N ASN A 199 SHEET 6 AA2 6 LYS A 214 THR A 219 -1 O TRP A 216 N ALA A 209 SHEET 1 AA3 7 PHE A 16 GLY A 20 0 SHEET 2 AA3 7 THR A 50 TYR A 56 -1 O GLU A 55 N THR A 17 SHEET 3 AA3 7 ASN A 232 HIS A 239 -1 O PHE A 233 N TYR A 56 SHEET 4 AA3 7 GLY A 85 THR A 91 -1 N THR A 91 O ASN A 232 SHEET 5 AA3 7 SER A 114 ASP A 119 -1 O SER A 114 N PHE A 90 SHEET 6 AA3 7 VAL A 142 ASN A 150 -1 O TYR A 144 N ASP A 119 SHEET 7 AA3 7 THR A 156 VAL A 159 -1 O ASN A 157 N LYS A 149 SHEET 1 AA4 7 PHE A 16 GLY A 20 0 SHEET 2 AA4 7 THR A 50 TYR A 56 -1 O GLU A 55 N THR A 17 SHEET 3 AA4 7 ASN A 232 HIS A 239 -1 O PHE A 233 N TYR A 56 SHEET 4 AA4 7 GLY A 85 THR A 91 -1 N THR A 91 O ASN A 232 SHEET 5 AA4 7 SER A 114 ASP A 119 -1 O SER A 114 N PHE A 90 SHEET 6 AA4 7 VAL A 142 ASN A 150 -1 O TYR A 144 N ASP A 119 SHEET 7 AA4 7 LYS A 173 ILE A 175 -1 O ILE A 174 N GLY A 143 LINK OD1 ASP A 119 CA CA A 300 1555 1555 2.33 LINK OD2 ASP A 119 CA CA A 300 1555 1555 2.36 LINK O ALA A 121 CA CA A 300 1555 1555 2.36 LINK OD1 ASN A 123 CA CA A 300 1555 1555 2.34 LINK OD1 ASP A 127 CA CA A 300 1555 1555 2.37 LINK OD2 ASP A 127 CA CA A 300 1555 1555 2.41 LINK CA CA A 300 O HOH A 403 1555 1555 2.33 LINK CA CA A 300 O HOH A 404 1555 1555 2.31 CISPEP 1 LYS A 169 PRO A 170 0 -1.19 CRYST1 97.210 97.210 97.210 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010287 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010287 0.00000