HEADER TRANSFERASE/INHIBITOR 05-NOV-21 7SQL TITLE CRYSTAL STRUCTURE OF HUMAN URIDINE-CYTIDINE KINASE 2 COMPLEXED WITH A TITLE 2 WEAK SMALL MOLECULE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDINE-CYTIDINE KINASE 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: UCK 2,CYTIDINE MONOPHOSPHOKINASE 2,TESTIS-SPECIFIC PROTEIN COMPND 5 TSA903,URIDINE MONOPHOSPHOKINASE 2; COMPND 6 EC: 2.7.1.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UCK2, UMPK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KINASE, URIDINE KINASE, CYTIDINE KINASE, INHIBITOR, TRANSFERASE, KEYWDS 2 TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.MASHAYEKH,L.M.STUNKARD,M.KIENLE,I.I.MATHEWS,C.KHOSLA REVDAT 3 25-OCT-23 7SQL 1 REMARK REVDAT 2 26-APR-23 7SQL 1 JRNL REVDAT 1 12-OCT-22 7SQL 0 JRNL AUTH S.MASHAYEKH,L.M.STUNKARD,M.KIENLE,I.I.MATHEWS,C.KHOSLA JRNL TITL STRUCTURE-BASED PROTOTYPING OF ALLOSTERIC INHIBITORS OF JRNL TITL 2 HUMAN URIDINE/CYTIDINE KINASE 2 (UCK2). JRNL REF BIOCHEMISTRY V. 61 2261 2022 JRNL REFN ISSN 0006-2960 JRNL PMID 36190114 JRNL DOI 10.1021/ACS.BIOCHEM.2C00451 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 46673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2414 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3314 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6788 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 149 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.07000 REMARK 3 B22 (A**2) : -1.25000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.317 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.249 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.194 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.534 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7215 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6981 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9743 ; 1.503 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16055 ; 1.215 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 864 ; 7.151 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 389 ;33.062 ;22.828 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1273 ;17.993 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;19.377 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 926 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8053 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1671 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7SQL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000260734. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : FLAT SI RH COATED M0, REMARK 200 KIRKPATRICK-BAEZ FLAT BENT SI M1 REMARK 200 & M2 REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49319 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 39.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.23300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 3.00400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 1UFQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% GLYCEROL, 100 MM HEPES PH 6.9, 8% REMARK 280 PEG 3350, AND 30% PEG 400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.04350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.94650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.04350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.94650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 GLN A 7 REMARK 465 THR A 8 REMARK 465 LEU A 9 REMARK 465 GLN A 10 REMARK 465 ASN A 11 REMARK 465 HIS A 12 REMARK 465 GLN A 13 REMARK 465 GLN A 14 REMARK 465 PRO A 15 REMARK 465 ASN A 16 REMARK 465 GLY A 17 REMARK 465 GLY A 18 REMARK 465 GLY A 232 REMARK 465 PRO A 233 REMARK 465 SER A 234 REMARK 465 LYS A 235 REMARK 465 ARG A 236 REMARK 465 GLN A 237 REMARK 465 THR A 238 REMARK 465 ASN A 239 REMARK 465 GLY A 240 REMARK 465 CYS A 241 REMARK 465 LEU A 242 REMARK 465 ASN A 243 REMARK 465 GLY A 244 REMARK 465 TYR A 245 REMARK 465 THR A 246 REMARK 465 PRO A 247 REMARK 465 SER A 248 REMARK 465 ARG A 249 REMARK 465 LYS A 250 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 ASP B 4 REMARK 465 SER B 5 REMARK 465 GLU B 6 REMARK 465 GLN B 7 REMARK 465 THR B 8 REMARK 465 LEU B 9 REMARK 465 GLN B 10 REMARK 465 ASN B 11 REMARK 465 HIS B 12 REMARK 465 GLN B 13 REMARK 465 GLN B 14 REMARK 465 PRO B 15 REMARK 465 ASN B 16 REMARK 465 GLY B 17 REMARK 465 GLY B 18 REMARK 465 GLY B 231 REMARK 465 GLY B 232 REMARK 465 PRO B 233 REMARK 465 SER B 234 REMARK 465 LYS B 235 REMARK 465 ARG B 236 REMARK 465 GLN B 237 REMARK 465 THR B 238 REMARK 465 ASN B 239 REMARK 465 GLY B 240 REMARK 465 CYS B 241 REMARK 465 LEU B 242 REMARK 465 ASN B 243 REMARK 465 GLY B 244 REMARK 465 TYR B 245 REMARK 465 THR B 246 REMARK 465 PRO B 247 REMARK 465 SER B 248 REMARK 465 ARG B 249 REMARK 465 LYS B 250 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 3 REMARK 465 ASP C 4 REMARK 465 SER C 5 REMARK 465 GLU C 6 REMARK 465 GLN C 7 REMARK 465 THR C 8 REMARK 465 LEU C 9 REMARK 465 GLN C 10 REMARK 465 ASN C 11 REMARK 465 HIS C 12 REMARK 465 GLN C 13 REMARK 465 GLN C 14 REMARK 465 PRO C 15 REMARK 465 ASN C 16 REMARK 465 ASP C 50 REMARK 465 TYR C 51 REMARK 465 GLY C 231 REMARK 465 GLY C 232 REMARK 465 PRO C 233 REMARK 465 SER C 234 REMARK 465 LYS C 235 REMARK 465 ARG C 236 REMARK 465 GLN C 237 REMARK 465 THR C 238 REMARK 465 ASN C 239 REMARK 465 GLY C 240 REMARK 465 CYS C 241 REMARK 465 LEU C 242 REMARK 465 ASN C 243 REMARK 465 GLY C 244 REMARK 465 TYR C 245 REMARK 465 THR C 246 REMARK 465 PRO C 247 REMARK 465 SER C 248 REMARK 465 ARG C 249 REMARK 465 LYS C 250 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLY D 3 REMARK 465 ASP D 4 REMARK 465 SER D 5 REMARK 465 GLU D 6 REMARK 465 GLN D 7 REMARK 465 THR D 8 REMARK 465 LEU D 9 REMARK 465 GLN D 10 REMARK 465 ASN D 11 REMARK 465 HIS D 12 REMARK 465 GLN D 13 REMARK 465 GLN D 14 REMARK 465 PRO D 15 REMARK 465 ASN D 16 REMARK 465 GLY D 17 REMARK 465 GLY D 18 REMARK 465 GLY D 231 REMARK 465 GLY D 232 REMARK 465 PRO D 233 REMARK 465 SER D 234 REMARK 465 LYS D 235 REMARK 465 ARG D 236 REMARK 465 GLN D 237 REMARK 465 THR D 238 REMARK 465 ASN D 239 REMARK 465 GLY D 240 REMARK 465 CYS D 241 REMARK 465 LEU D 242 REMARK 465 ASN D 243 REMARK 465 GLY D 244 REMARK 465 TYR D 245 REMARK 465 THR D 246 REMARK 465 PRO D 247 REMARK 465 SER D 248 REMARK 465 ARG D 249 REMARK 465 LYS D 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 162 O HOH B 402 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 103 OE2 GLU B 103 2565 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 188 -55.82 -122.45 REMARK 500 ARG A 210 -38.57 85.78 REMARK 500 ARG A 210 -42.00 88.60 REMARK 500 TYR B 51 -38.70 -39.64 REMARK 500 PHE B 114 32.70 -89.70 REMARK 500 SER B 172 -74.77 -104.84 REMARK 500 GLU B 173 -30.72 -29.91 REMARK 500 GLU B 173 -27.63 -33.27 REMARK 500 ARG B 210 -49.08 72.46 REMARK 500 GLN C 53 56.64 -108.32 REMARK 500 GLU C 122 119.58 -39.61 REMARK 500 PHE C 188 -50.58 -123.06 REMARK 500 ARG C 210 -43.09 92.28 REMARK 500 SER D 63 -19.41 -48.78 REMARK 500 PHE D 83 0.56 -67.08 REMARK 500 GLU D 173 -77.16 -59.94 REMARK 500 PHE D 188 -59.05 -122.06 REMARK 500 ARG D 210 -42.64 86.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 7SQL A 1 250 UNP Q9BZX2 UCK2_HUMAN 1 250 DBREF 7SQL B 1 250 UNP Q9BZX2 UCK2_HUMAN 1 250 DBREF 7SQL C 1 250 UNP Q9BZX2 UCK2_HUMAN 1 250 DBREF 7SQL D 1 250 UNP Q9BZX2 UCK2_HUMAN 1 250 SEQRES 1 A 250 MET ALA GLY ASP SER GLU GLN THR LEU GLN ASN HIS GLN SEQRES 2 A 250 GLN PRO ASN GLY GLY GLU PRO PHE LEU ILE GLY VAL SER SEQRES 3 A 250 GLY GLY THR ALA SER GLY LYS SER SER VAL CYS ALA LYS SEQRES 4 A 250 ILE VAL GLN LEU LEU GLY GLN ASN GLU VAL ASP TYR ARG SEQRES 5 A 250 GLN LYS GLN VAL VAL ILE LEU SER GLN ASP SER PHE TYR SEQRES 6 A 250 ARG VAL LEU THR SER GLU GLN LYS ALA LYS ALA LEU LYS SEQRES 7 A 250 GLY GLN PHE ASN PHE ASP HIS PRO ASP ALA PHE ASP ASN SEQRES 8 A 250 GLU LEU ILE LEU LYS THR LEU LYS GLU ILE THR GLU GLY SEQRES 9 A 250 LYS THR VAL GLN ILE PRO VAL TYR ASP PHE VAL SER HIS SEQRES 10 A 250 SER ARG LYS GLU GLU THR VAL THR VAL TYR PRO ALA ASP SEQRES 11 A 250 VAL VAL LEU PHE GLU GLY ILE LEU ALA PHE TYR SER GLN SEQRES 12 A 250 GLU VAL ARG ASP LEU PHE GLN MET LYS LEU PHE VAL ASP SEQRES 13 A 250 THR ASP ALA ASP THR ARG LEU SER ARG ARG VAL LEU ARG SEQRES 14 A 250 ASP ILE SER GLU ARG GLY ARG ASP LEU GLU GLN ILE LEU SEQRES 15 A 250 SER GLN TYR ILE THR PHE VAL LYS PRO ALA PHE GLU GLU SEQRES 16 A 250 PHE CYS LEU PRO THR LYS LYS TYR ALA ASP VAL ILE ILE SEQRES 17 A 250 PRO ARG GLY ALA ASP ASN LEU VAL ALA ILE ASN LEU ILE SEQRES 18 A 250 VAL GLN HIS ILE GLN ASP ILE LEU ASN GLY GLY PRO SER SEQRES 19 A 250 LYS ARG GLN THR ASN GLY CYS LEU ASN GLY TYR THR PRO SEQRES 20 A 250 SER ARG LYS SEQRES 1 B 250 MET ALA GLY ASP SER GLU GLN THR LEU GLN ASN HIS GLN SEQRES 2 B 250 GLN PRO ASN GLY GLY GLU PRO PHE LEU ILE GLY VAL SER SEQRES 3 B 250 GLY GLY THR ALA SER GLY LYS SER SER VAL CYS ALA LYS SEQRES 4 B 250 ILE VAL GLN LEU LEU GLY GLN ASN GLU VAL ASP TYR ARG SEQRES 5 B 250 GLN LYS GLN VAL VAL ILE LEU SER GLN ASP SER PHE TYR SEQRES 6 B 250 ARG VAL LEU THR SER GLU GLN LYS ALA LYS ALA LEU LYS SEQRES 7 B 250 GLY GLN PHE ASN PHE ASP HIS PRO ASP ALA PHE ASP ASN SEQRES 8 B 250 GLU LEU ILE LEU LYS THR LEU LYS GLU ILE THR GLU GLY SEQRES 9 B 250 LYS THR VAL GLN ILE PRO VAL TYR ASP PHE VAL SER HIS SEQRES 10 B 250 SER ARG LYS GLU GLU THR VAL THR VAL TYR PRO ALA ASP SEQRES 11 B 250 VAL VAL LEU PHE GLU GLY ILE LEU ALA PHE TYR SER GLN SEQRES 12 B 250 GLU VAL ARG ASP LEU PHE GLN MET LYS LEU PHE VAL ASP SEQRES 13 B 250 THR ASP ALA ASP THR ARG LEU SER ARG ARG VAL LEU ARG SEQRES 14 B 250 ASP ILE SER GLU ARG GLY ARG ASP LEU GLU GLN ILE LEU SEQRES 15 B 250 SER GLN TYR ILE THR PHE VAL LYS PRO ALA PHE GLU GLU SEQRES 16 B 250 PHE CYS LEU PRO THR LYS LYS TYR ALA ASP VAL ILE ILE SEQRES 17 B 250 PRO ARG GLY ALA ASP ASN LEU VAL ALA ILE ASN LEU ILE SEQRES 18 B 250 VAL GLN HIS ILE GLN ASP ILE LEU ASN GLY GLY PRO SER SEQRES 19 B 250 LYS ARG GLN THR ASN GLY CYS LEU ASN GLY TYR THR PRO SEQRES 20 B 250 SER ARG LYS SEQRES 1 C 250 MET ALA GLY ASP SER GLU GLN THR LEU GLN ASN HIS GLN SEQRES 2 C 250 GLN PRO ASN GLY GLY GLU PRO PHE LEU ILE GLY VAL SER SEQRES 3 C 250 GLY GLY THR ALA SER GLY LYS SER SER VAL CYS ALA LYS SEQRES 4 C 250 ILE VAL GLN LEU LEU GLY GLN ASN GLU VAL ASP TYR ARG SEQRES 5 C 250 GLN LYS GLN VAL VAL ILE LEU SER GLN ASP SER PHE TYR SEQRES 6 C 250 ARG VAL LEU THR SER GLU GLN LYS ALA LYS ALA LEU LYS SEQRES 7 C 250 GLY GLN PHE ASN PHE ASP HIS PRO ASP ALA PHE ASP ASN SEQRES 8 C 250 GLU LEU ILE LEU LYS THR LEU LYS GLU ILE THR GLU GLY SEQRES 9 C 250 LYS THR VAL GLN ILE PRO VAL TYR ASP PHE VAL SER HIS SEQRES 10 C 250 SER ARG LYS GLU GLU THR VAL THR VAL TYR PRO ALA ASP SEQRES 11 C 250 VAL VAL LEU PHE GLU GLY ILE LEU ALA PHE TYR SER GLN SEQRES 12 C 250 GLU VAL ARG ASP LEU PHE GLN MET LYS LEU PHE VAL ASP SEQRES 13 C 250 THR ASP ALA ASP THR ARG LEU SER ARG ARG VAL LEU ARG SEQRES 14 C 250 ASP ILE SER GLU ARG GLY ARG ASP LEU GLU GLN ILE LEU SEQRES 15 C 250 SER GLN TYR ILE THR PHE VAL LYS PRO ALA PHE GLU GLU SEQRES 16 C 250 PHE CYS LEU PRO THR LYS LYS TYR ALA ASP VAL ILE ILE SEQRES 17 C 250 PRO ARG GLY ALA ASP ASN LEU VAL ALA ILE ASN LEU ILE SEQRES 18 C 250 VAL GLN HIS ILE GLN ASP ILE LEU ASN GLY GLY PRO SER SEQRES 19 C 250 LYS ARG GLN THR ASN GLY CYS LEU ASN GLY TYR THR PRO SEQRES 20 C 250 SER ARG LYS SEQRES 1 D 250 MET ALA GLY ASP SER GLU GLN THR LEU GLN ASN HIS GLN SEQRES 2 D 250 GLN PRO ASN GLY GLY GLU PRO PHE LEU ILE GLY VAL SER SEQRES 3 D 250 GLY GLY THR ALA SER GLY LYS SER SER VAL CYS ALA LYS SEQRES 4 D 250 ILE VAL GLN LEU LEU GLY GLN ASN GLU VAL ASP TYR ARG SEQRES 5 D 250 GLN LYS GLN VAL VAL ILE LEU SER GLN ASP SER PHE TYR SEQRES 6 D 250 ARG VAL LEU THR SER GLU GLN LYS ALA LYS ALA LEU LYS SEQRES 7 D 250 GLY GLN PHE ASN PHE ASP HIS PRO ASP ALA PHE ASP ASN SEQRES 8 D 250 GLU LEU ILE LEU LYS THR LEU LYS GLU ILE THR GLU GLY SEQRES 9 D 250 LYS THR VAL GLN ILE PRO VAL TYR ASP PHE VAL SER HIS SEQRES 10 D 250 SER ARG LYS GLU GLU THR VAL THR VAL TYR PRO ALA ASP SEQRES 11 D 250 VAL VAL LEU PHE GLU GLY ILE LEU ALA PHE TYR SER GLN SEQRES 12 D 250 GLU VAL ARG ASP LEU PHE GLN MET LYS LEU PHE VAL ASP SEQRES 13 D 250 THR ASP ALA ASP THR ARG LEU SER ARG ARG VAL LEU ARG SEQRES 14 D 250 ASP ILE SER GLU ARG GLY ARG ASP LEU GLU GLN ILE LEU SEQRES 15 D 250 SER GLN TYR ILE THR PHE VAL LYS PRO ALA PHE GLU GLU SEQRES 16 D 250 PHE CYS LEU PRO THR LYS LYS TYR ALA ASP VAL ILE ILE SEQRES 17 D 250 PRO ARG GLY ALA ASP ASN LEU VAL ALA ILE ASN LEU ILE SEQRES 18 D 250 VAL GLN HIS ILE GLN ASP ILE LEU ASN GLY GLY PRO SER SEQRES 19 D 250 LYS ARG GLN THR ASN GLY CYS LEU ASN GLY TYR THR PRO SEQRES 20 D 250 SER ARG LYS HET PGE A 301 10 HET PGE A 302 10 HET GOL A 303 6 HET PG4 B 301 13 HET PEG B 302 7 HET GOL B 303 6 HET AQX C 301 58 HET PEG C 302 7 HET GOL C 303 6 HET AQX D 301 87 HET PG4 D 302 13 HET GOL D 303 6 HET PEG D 304 7 HETNAM PGE TRIETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM AQX N-(4-BROMOPHENYL)-2-{[1-(4-FLUOROPHENYL)-4-OXO-4,5- HETNAM 2 AQX DIHYDRO-1H-PYRAZOLO[3,4-D]PYRIMIDIN-6- HETNAM 3 AQX YL]SULFANYL}ACETAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 PGE 2(C6 H14 O4) FORMUL 7 GOL 4(C3 H8 O3) FORMUL 8 PG4 2(C8 H18 O5) FORMUL 9 PEG 3(C4 H10 O3) FORMUL 11 AQX 2(C19 H13 BR F N5 O2 S) FORMUL 18 HOH *233(H2 O) HELIX 1 AA1 GLY A 32 LEU A 44 1 13 HELIX 2 AA2 GLY A 45 VAL A 49 5 5 HELIX 3 AA3 ASP A 62 PHE A 64 5 3 HELIX 4 AA4 THR A 69 LYS A 78 1 10 HELIX 5 AA5 HIS A 85 PHE A 89 5 5 HELIX 6 AA6 ASP A 90 GLU A 103 1 14 HELIX 7 AA7 SER A 142 ASP A 147 1 6 HELIX 8 AA8 ASP A 158 GLU A 173 1 16 HELIX 9 AA9 ASP A 177 PHE A 188 1 12 HELIX 10 AB1 PHE A 188 CYS A 197 1 10 HELIX 11 AB2 LEU A 198 ALA A 204 5 7 HELIX 12 AB3 ASN A 214 LEU A 229 1 16 HELIX 13 AB4 GLY B 32 LEU B 44 1 13 HELIX 14 AB5 ASP B 50 LYS B 54 5 5 HELIX 15 AB6 ASP B 62 TYR B 65 5 4 HELIX 16 AB7 THR B 69 LYS B 78 1 10 HELIX 17 AB8 HIS B 85 PHE B 89 5 5 HELIX 18 AB9 ASP B 90 GLU B 103 1 14 HELIX 19 AC1 SER B 142 ASP B 147 1 6 HELIX 20 AC2 ASP B 158 ARG B 174 1 17 HELIX 21 AC3 ASP B 177 PHE B 188 1 12 HELIX 22 AC4 PHE B 188 CYS B 197 1 10 HELIX 23 AC5 LEU B 198 ALA B 204 5 7 HELIX 24 AC6 ASN B 214 ASN B 230 1 17 HELIX 25 AC7 GLY C 32 LEU C 43 1 12 HELIX 26 AC8 ASP C 62 TYR C 65 5 4 HELIX 27 AC9 THR C 69 LYS C 78 1 10 HELIX 28 AD1 HIS C 85 PHE C 89 5 5 HELIX 29 AD2 ASP C 90 GLU C 103 1 14 HELIX 30 AD3 SER C 142 ASP C 147 1 6 HELIX 31 AD4 ASP C 158 GLU C 173 1 16 HELIX 32 AD5 ASP C 177 PHE C 188 1 12 HELIX 33 AD6 PHE C 188 CYS C 197 1 10 HELIX 34 AD7 LEU C 198 ALA C 204 5 7 HELIX 35 AD8 ASN C 214 ASN C 230 1 17 HELIX 36 AD9 GLY D 32 LEU D 44 1 13 HELIX 37 AE1 ASP D 50 LYS D 54 5 5 HELIX 38 AE2 ASP D 62 TYR D 65 5 4 HELIX 39 AE3 THR D 69 LYS D 78 1 10 HELIX 40 AE4 HIS D 85 PHE D 89 5 5 HELIX 41 AE5 ASP D 90 GLU D 103 1 14 HELIX 42 AE6 SER D 142 ASP D 147 1 6 HELIX 43 AE7 ASP D 158 GLU D 173 1 16 HELIX 44 AE8 ASP D 177 PHE D 188 1 12 HELIX 45 AE9 PHE D 188 PHE D 196 1 9 HELIX 46 AF1 CYS D 197 ALA D 204 5 8 HELIX 47 AF2 ASN D 214 LEU D 229 1 16 SHEET 1 AA1 5 VAL A 56 SER A 60 0 SHEET 2 AA1 5 VAL A 131 GLU A 135 1 O LEU A 133 N LEU A 59 SHEET 3 AA1 5 PHE A 21 SER A 26 1 N VAL A 25 O PHE A 134 SHEET 4 AA1 5 MET A 151 ASP A 156 1 O VAL A 155 N SER A 26 SHEET 5 AA1 5 VAL A 206 PRO A 209 1 O ILE A 208 N PHE A 154 SHEET 1 AA2 2 VAL A 107 ILE A 109 0 SHEET 2 AA2 2 VAL A 124 VAL A 126 -1 O VAL A 124 N ILE A 109 SHEET 1 AA3 2 TYR A 112 ASP A 113 0 SHEET 2 AA3 2 SER A 118 ARG A 119 -1 O SER A 118 N ASP A 113 SHEET 1 AA4 5 VAL B 56 SER B 60 0 SHEET 2 AA4 5 VAL B 131 GLU B 135 1 O LEU B 133 N LEU B 59 SHEET 3 AA4 5 PHE B 21 SER B 26 1 N VAL B 25 O PHE B 134 SHEET 4 AA4 5 MET B 151 ASP B 156 1 O LEU B 153 N GLY B 24 SHEET 5 AA4 5 VAL B 206 PRO B 209 1 O ILE B 208 N PHE B 154 SHEET 1 AA5 2 VAL B 107 ILE B 109 0 SHEET 2 AA5 2 VAL B 124 VAL B 126 -1 O VAL B 124 N ILE B 109 SHEET 1 AA6 2 TYR B 112 ASP B 113 0 SHEET 2 AA6 2 SER B 118 ARG B 119 -1 O SER B 118 N ASP B 113 SHEET 1 AA7 5 VAL C 56 SER C 60 0 SHEET 2 AA7 5 VAL C 131 GLU C 135 1 O LEU C 133 N LEU C 59 SHEET 3 AA7 5 PHE C 21 SER C 26 1 N ILE C 23 O VAL C 132 SHEET 4 AA7 5 MET C 151 ASP C 156 1 O LEU C 153 N GLY C 24 SHEET 5 AA7 5 VAL C 206 PRO C 209 1 O ILE C 208 N PHE C 154 SHEET 1 AA8 2 VAL C 107 ASP C 113 0 SHEET 2 AA8 2 SER C 118 VAL C 126 -1 O SER C 118 N ASP C 113 SHEET 1 AA9 5 VAL D 56 SER D 60 0 SHEET 2 AA9 5 VAL D 131 GLU D 135 1 O LEU D 133 N LEU D 59 SHEET 3 AA9 5 PHE D 21 SER D 26 1 N ILE D 23 O VAL D 132 SHEET 4 AA9 5 MET D 151 ASP D 156 1 O VAL D 155 N SER D 26 SHEET 5 AA9 5 VAL D 206 PRO D 209 1 O ILE D 208 N PHE D 154 SHEET 1 AB1 2 VAL D 107 ASP D 113 0 SHEET 2 AB1 2 SER D 118 VAL D 126 -1 O VAL D 124 N ILE D 109 CRYST1 84.087 93.893 157.497 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011892 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006349 0.00000