HEADER BLOOD CLOTTING 08-NOV-21 7SR9 TITLE HUMAN ALPHA-THROMBIN WITH 180- AND 220- LOOPS REPLACED WITH HOMOLOGOUS TITLE 2 LOOPS FROM PROTEIN C COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 328-363; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: THROMBIN HEAVY CHAIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 364-622; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F2; SOURCE 6 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10036; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: F2; SOURCE 13 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10036 KEYWDS THROMBIN, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR E.DI CERA,E.A.RUBEN,Z.CHEN REVDAT 3 18-OCT-23 7SR9 1 REMARK REVDAT 2 22-JUN-22 7SR9 1 JRNL REVDAT 1 08-DEC-21 7SR9 0 JRNL AUTH L.A.PELC,S.K.KOESTER,C.R.KUKLA,Z.CHEN,E.DI CERA JRNL TITL THE ACTIVE SITE REGION PLAYS A CRITICAL ROLE IN NA + BINDING JRNL TITL 2 TO THROMBIN. JRNL REF J.BIOL.CHEM. V. 298 01458 2022 JRNL REFN ESSN 1083-351X JRNL PMID 34861239 JRNL DOI 10.1016/J.JBC.2021.101458 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 19962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1073 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1338 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2321 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.858 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2437 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3297 ; 1.393 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 6.502 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;32.794 ;23.274 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 423 ;16.494 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.807 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1833 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1438 ; 0.523 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2316 ; 0.971 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 999 ; 1.764 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 981 ; 2.761 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 3 REMARK 3 ORIGIN FOR THE GROUP (A): 10.034 10.928 19.873 REMARK 3 T TENSOR REMARK 3 T11: 0.5281 T22: 0.6769 REMARK 3 T33: 0.1894 T12: 0.1402 REMARK 3 T13: 0.0780 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 10.4284 L22: 0.9039 REMARK 3 L33: 30.8649 L12: -2.8648 REMARK 3 L13: 14.4502 L23: -5.0669 REMARK 3 S TENSOR REMARK 3 S11: -1.4379 S12: -2.0084 S13: 0.3526 REMARK 3 S21: 0.3603 S22: 0.2659 S23: -0.1617 REMARK 3 S31: -1.3692 S32: -1.3344 S33: 1.1720 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 10.611 14.167 3.582 REMARK 3 T TENSOR REMARK 3 T11: 0.0732 T22: 0.0629 REMARK 3 T33: 0.1238 T12: 0.0039 REMARK 3 T13: 0.0213 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 9.5962 L22: 6.9298 REMARK 3 L33: 5.7279 L12: -2.3648 REMARK 3 L13: 2.6136 L23: -0.6320 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.2374 S13: 0.2881 REMARK 3 S21: -0.2700 S22: 0.0400 S23: 0.2390 REMARK 3 S31: -0.3202 S32: -0.5074 S33: -0.0113 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): 7.457 -0.743 -2.916 REMARK 3 T TENSOR REMARK 3 T11: 0.0575 T22: 0.0894 REMARK 3 T33: 0.0661 T12: 0.0265 REMARK 3 T13: 0.0047 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 7.7123 L22: 9.3193 REMARK 3 L33: 3.6037 L12: 5.2441 REMARK 3 L13: 1.4353 L23: 1.0252 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.1897 S13: -0.1495 REMARK 3 S21: -0.3390 S22: -0.0052 S23: 0.2779 REMARK 3 S31: 0.1901 S32: -0.1243 S33: -0.0140 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 35 REMARK 3 ORIGIN FOR THE GROUP (A): 24.616 5.136 5.812 REMARK 3 T TENSOR REMARK 3 T11: 0.0344 T22: 0.1984 REMARK 3 T33: 0.0838 T12: 0.0071 REMARK 3 T13: 0.0374 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.0012 L22: 3.7069 REMARK 3 L33: 3.2711 L12: -0.2477 REMARK 3 L13: -1.3839 L23: 0.7139 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: 0.1071 S13: 0.0215 REMARK 3 S21: 0.1000 S22: -0.0276 S23: -0.2614 REMARK 3 S31: -0.0005 S32: 0.3442 S33: -0.0082 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 36 B 59 REMARK 3 ORIGIN FOR THE GROUP (A): 27.848 0.648 18.597 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.2060 REMARK 3 T33: 0.1625 T12: -0.0348 REMARK 3 T13: -0.0535 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.7389 L22: 5.0606 REMARK 3 L33: 3.1837 L12: 0.1219 REMARK 3 L13: 1.5068 L23: -0.2801 REMARK 3 S TENSOR REMARK 3 S11: 0.1690 S12: 0.1297 S13: -0.0767 REMARK 3 S21: 0.4466 S22: -0.0721 S23: -0.7511 REMARK 3 S31: 0.2436 S32: 0.3685 S33: -0.0969 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 60 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): 33.321 1.004 20.494 REMARK 3 T TENSOR REMARK 3 T11: 0.3856 T22: 0.3441 REMARK 3 T33: 0.6788 T12: 0.0255 REMARK 3 T13: -0.3099 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.1069 L22: 8.6978 REMARK 3 L33: 1.2990 L12: -1.6359 REMARK 3 L13: 0.0648 L23: -2.8166 REMARK 3 S TENSOR REMARK 3 S11: -0.1009 S12: -0.1690 S13: 0.1174 REMARK 3 S21: 0.5285 S22: -0.4583 S23: -1.8425 REMARK 3 S31: -0.0103 S32: 0.4102 S33: 0.5592 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 78 REMARK 3 ORIGIN FOR THE GROUP (A): 31.684 14.546 6.838 REMARK 3 T TENSOR REMARK 3 T11: 0.1357 T22: 0.2039 REMARK 3 T33: 0.1456 T12: -0.0111 REMARK 3 T13: 0.0021 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 4.1601 L22: 12.4381 REMARK 3 L33: 1.6022 L12: 1.7162 REMARK 3 L13: 1.9885 L23: 3.5691 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: 0.0000 S13: 0.1584 REMARK 3 S21: 0.0453 S22: 0.2223 S23: -1.2115 REMARK 3 S31: -0.0004 S32: 0.0895 S33: -0.2238 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 79 B 128 REMARK 3 ORIGIN FOR THE GROUP (A): 20.061 1.171 19.901 REMARK 3 T TENSOR REMARK 3 T11: 0.1670 T22: 0.1584 REMARK 3 T33: 0.0418 T12: -0.0155 REMARK 3 T13: 0.0238 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.2998 L22: 4.5392 REMARK 3 L33: 1.6400 L12: 0.1554 REMARK 3 L13: 0.3367 L23: -0.7084 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: -0.3417 S13: -0.0499 REMARK 3 S21: 0.5541 S22: -0.0586 S23: -0.2093 REMARK 3 S31: 0.0681 S32: 0.0042 S33: 0.0272 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 129 B 163 REMARK 3 ORIGIN FOR THE GROUP (A): 23.134 -4.633 2.093 REMARK 3 T TENSOR REMARK 3 T11: 0.0739 T22: 0.0784 REMARK 3 T33: 0.0743 T12: 0.0255 REMARK 3 T13: -0.0027 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 3.0833 L22: 2.5138 REMARK 3 L33: 1.3429 L12: -0.2389 REMARK 3 L13: -0.1800 L23: 0.3846 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: 0.0245 S13: -0.2256 REMARK 3 S21: -0.0404 S22: 0.0653 S23: -0.3556 REMARK 3 S31: 0.1783 S32: 0.2390 S33: -0.0859 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 164 B 175 REMARK 3 ORIGIN FOR THE GROUP (A): 16.767 -21.636 8.235 REMARK 3 T TENSOR REMARK 3 T11: 0.2020 T22: 0.0494 REMARK 3 T33: 0.2711 T12: -0.0146 REMARK 3 T13: -0.0102 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 5.5837 L22: 3.3316 REMARK 3 L33: 9.4070 L12: 1.3693 REMARK 3 L13: 2.1518 L23: 1.2654 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: 0.1773 S13: -0.7948 REMARK 3 S21: -0.1639 S22: 0.0474 S23: 0.4364 REMARK 3 S31: 0.5618 S32: 0.1359 S33: -0.0201 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 176 B 192 REMARK 3 ORIGIN FOR THE GROUP (A): 19.635 -11.945 4.988 REMARK 3 T TENSOR REMARK 3 T11: 0.0666 T22: 0.0288 REMARK 3 T33: 0.1296 T12: 0.0380 REMARK 3 T13: -0.0107 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 3.5990 L22: 2.2165 REMARK 3 L33: 7.4773 L12: 0.1181 REMARK 3 L13: -3.1951 L23: 0.9788 REMARK 3 S TENSOR REMARK 3 S11: -0.0748 S12: 0.0719 S13: -0.1182 REMARK 3 S21: -0.0328 S22: 0.0092 S23: -0.0390 REMARK 3 S31: 0.1324 S32: -0.0723 S33: 0.0657 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 193 B 232 REMARK 3 ORIGIN FOR THE GROUP (A): 16.159 -5.321 8.131 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.0481 REMARK 3 T33: 0.0402 T12: -0.0009 REMARK 3 T13: 0.0231 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.0826 L22: 1.6217 REMARK 3 L33: 1.9090 L12: 0.0803 REMARK 3 L13: 0.0807 L23: 0.3809 REMARK 3 S TENSOR REMARK 3 S11: -0.0922 S12: -0.1348 S13: -0.1085 REMARK 3 S21: 0.0978 S22: 0.0843 S23: 0.0454 REMARK 3 S31: 0.1489 S32: 0.0628 S33: 0.0079 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 233 B 244 REMARK 3 ORIGIN FOR THE GROUP (A): 13.556 -1.821 27.358 REMARK 3 T TENSOR REMARK 3 T11: 0.3236 T22: 0.2731 REMARK 3 T33: 0.1363 T12: -0.0322 REMARK 3 T13: 0.0693 T23: 0.0547 REMARK 3 L TENSOR REMARK 3 L11: 9.7641 L22: 21.0442 REMARK 3 L33: 9.7642 L12: 0.7119 REMARK 3 L13: 1.2078 L23: 6.6071 REMARK 3 S TENSOR REMARK 3 S11: 0.2510 S12: -1.0108 S13: 0.4455 REMARK 3 S21: 1.2228 S22: -0.2977 S23: -0.2787 REMARK 3 S31: -0.2065 S32: -0.1942 S33: 0.0466 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7SR9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000260934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU R-AXIS IV REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21066 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.020 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: PDB ENTRY 1PPB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 0.2 M LITHIUM REMARK 280 SULFATE, 30% PEG4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.48450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.26250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.48450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.26250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 101 O HOH B 501 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 7 -84.77 -124.74 REMARK 500 TYR B 60A 88.85 -151.13 REMARK 500 ASN B 60G 85.38 -167.73 REMARK 500 HIS B 71 -62.43 -129.29 REMARK 500 ILE B 79 -62.70 -122.10 REMARK 500 REMARK 500 REMARK: NULL DBREF 7SR9 A 1G 15 UNP P00734 THRB_HUMAN 329 363 DBREF 7SR9 B 16 244 UNP P00734 THRB_HUMAN 364 619 SEQADV 7SR9 ILE B 184A UNP P00734 TYR 553 ENGINEERED MUTATION SEQADV 7SR9 LEU B 184B UNP P00734 LYS 554 ENGINEERED MUTATION SEQADV 7SR9 B UNP P00734 PRO 555 DELETION SEQADV 7SR9 B UNP P00734 ASP 556 DELETION SEQADV 7SR9 B UNP P00734 GLU 557 DELETION SEQADV 7SR9 ASP B 186 UNP P00734 LYS 559 ENGINEERED MUTATION SEQADV 7SR9 GLN B 188 UNP P00734 GLY 561 ENGINEERED MUTATION SEQADV 7SR9 GLY B 221 UNP P00734 ASP 595 ENGINEERED MUTATION SEQADV 7SR9 LEU B 221A UNP P00734 ARG 596 ENGINEERED MUTATION SEQADV 7SR9 LEU B 222 UNP P00734 ASP 597 ENGINEERED MUTATION SEQADV 7SR9 HIS B 223 UNP P00734 GLY 598 ENGINEERED MUTATION SEQADV 7SR9 ASN B 224 UNP P00734 LYS 599 ENGINEERED MUTATION SEQRES 1 A 35 PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO LEU SEQRES 2 A 35 PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG GLU SEQRES 3 A 35 LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 B 253 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 B 253 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 B 253 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 B 253 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 B 253 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 B 253 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 B 253 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 B 253 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 B 253 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 B 253 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 B 253 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 B 253 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 B 253 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 B 253 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 B 253 ASP ASN MET PHE CYS ALA GLY ILE LEU GLY ASP ARG GLN SEQRES 16 B 253 ASP ALA CYS GLU GLY ASP SER GLY GLY PRO PHE VAL MET SEQRES 17 B 253 LYS SER PRO PHE ASN ASN ARG TRP TYR GLN MET GLY ILE SEQRES 18 B 253 VAL SER TRP GLY GLU GLY CYS GLY LEU LEU HIS ASN TYR SEQRES 19 B 253 GLY PHE TYR THR HIS VAL PHE ARG LEU LYS LYS TRP ILE SEQRES 20 B 253 GLN LYS VAL ILE ASP GLN HET SO4 A 101 5 HET NAG B 401 14 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HET GOL B 406 6 HETNAM SO4 SULFATE ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 5(O4 S 2-) FORMUL 4 NAG C8 H15 N O6 FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *169(H2 O) HELIX 1 AA1 PHE A 7 SER A 11 5 5 HELIX 2 AA2 THR A 14B GLY A 14M 1 12 HELIX 3 AA3 ALA B 55 CYS B 58 5 4 HELIX 4 AA4 PRO B 60B ASP B 60E 5 4 HELIX 5 AA5 THR B 60I ASN B 62 5 3 HELIX 6 AA6 ASP B 125 LEU B 130 1 9 HELIX 7 AA7 GLU B 164 SER B 171 1 8 HELIX 8 AA8 CYS B 191 SER B 195 5 5 HELIX 9 AA9 LEU B 234 GLN B 244 1 11 SHEET 1 AA1 8 SER B 20 ASP B 21 0 SHEET 2 AA1 8 GLN B 156 VAL B 163 -1 O VAL B 157 N SER B 20 SHEET 3 AA1 8 MET B 180 ALA B 183 -1 O CYS B 182 N VAL B 163 SHEET 4 AA1 8 GLY B 226 HIS B 230 -1 O TYR B 228 N PHE B 181 SHEET 5 AA1 8 TRP B 207 TRP B 215 -1 N TRP B 215 O PHE B 227 SHEET 6 AA1 8 PRO B 198 LYS B 202 -1 N MET B 201 O TYR B 208 SHEET 7 AA1 8 LYS B 135 GLY B 140 -1 N ARG B 137 O VAL B 200 SHEET 8 AA1 8 GLN B 156 VAL B 163 -1 O VAL B 158 N VAL B 138 SHEET 1 AA2 7 GLN B 30 ARG B 35 0 SHEET 2 AA2 7 GLU B 39 LEU B 46 -1 O GLU B 39 N ARG B 35 SHEET 3 AA2 7 TRP B 51 THR B 54 -1 O LEU B 53 N SER B 45 SHEET 4 AA2 7 ALA B 104 LEU B 108 -1 O MET B 106 N VAL B 52 SHEET 5 AA2 7 LYS B 81 ILE B 90 -1 N GLU B 86 O LYS B 107 SHEET 6 AA2 7 LEU B 64 ILE B 68 -1 N VAL B 66 O SER B 83 SHEET 7 AA2 7 GLN B 30 ARG B 35 -1 N MET B 32 O ARG B 67 SHEET 1 AA3 2 LEU B 60 TYR B 60A 0 SHEET 2 AA3 2 LYS B 60F ASN B 60G-1 O LYS B 60F N TYR B 60A SSBOND 1 CYS A 1 CYS B 122 1555 1555 2.07 SSBOND 2 CYS B 42 CYS B 58 1555 1555 2.05 SSBOND 3 CYS B 168 CYS B 182 1555 1555 2.06 SSBOND 4 CYS B 191 CYS B 220 1555 1555 2.05 LINK ND2 ASN B 60G C1 NAG B 401 1555 1555 1.44 CISPEP 1 SER B 36A PRO B 37 0 -1.45 CRYST1 98.969 78.525 49.602 90.00 103.22 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010104 0.000000 0.002373 0.00000 SCALE2 0.000000 0.012735 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020709 0.00000