data_7SRQ # _entry.id 7SRQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.361 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7SRQ pdb_00007srq 10.2210/pdb7srq/pdb WWPDB D_1000260921 ? ? EMDB EMD-25401 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details '5-HT2B receptor bound to LSD obtained by cryo-electron microscopy (cryoEM)' _pdbx_database_related.db_id EMD-25401 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7SRQ _pdbx_database_status.recvd_initial_deposition_date 2021-11-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Barros-Alvarez, X.' 1 0000-0001-6678-9436 'Cao, C.' 2 0000-0003-4017-741X 'Panova, O.' 3 0000-0002-5089-620X 'Roth, B.L.' 4 0000-0002-0561-6520 'Skiniotis, G.' 5 0000-0003-0238-7846 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Neuron _citation.journal_id_ASTM NERNET _citation.journal_id_CSD 2038 _citation.journal_id_ISSN 0896-6273 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 110 _citation.language ? _citation.page_first 3154 _citation.page_last ? _citation.title 'Signaling snapshots of a serotonin receptor activated by the prototypical psychedelic LSD.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.neuron.2022.08.006 _citation.pdbx_database_id_PubMed 36087581 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cao, C.' 1 ? primary 'Barros-Alvarez, X.' 2 ? primary 'Zhang, S.' 3 ? primary 'Kim, K.' 4 ? primary 'Damgen, M.A.' 5 ? primary 'Panova, O.' 6 ? primary 'Suomivuori, C.M.' 7 ? primary 'Fay, J.F.' 8 ? primary 'Zhong, X.' 9 ? primary 'Krumm, B.E.' 10 ? primary 'Gumpper, R.H.' 11 ? primary 'Seven, A.B.' 12 ? primary 'Robertson, M.J.' 13 ? primary 'Krogan, N.J.' 14 ? primary 'Huttenhain, R.' 15 ? primary 'Nichols, D.E.' 16 ? primary 'Dror, R.O.' 17 ? primary 'Skiniotis, G.' 18 ? primary 'Roth, B.L.' 19 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7SRQ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SRQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '5-hydroxytryptamine receptor 2B' 35052.629 1 ? ? ? ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 3 non-polymer syn '(8alpha)-N,N-diethyl-6-methyl-9,10-didehydroergoline-8-carboxamide' 323.432 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '5-HT-2B,5-HT2B,Serotonin receptor 2B' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TESIPEEMKQIVEEQGNKLHWAALLILMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTI MFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPIQANQYNSRATAFIKITVVWLISIGIAIPVPIKGI ETDVDNPNNITCVLTKERFGDFMLFGSLAAFFTPLAIMIVTYFLTIHALQKVRLLSGSRQTISNEQRASKVLGIVFFLFL LMWCPFFITNITLVLCDSCNQTTLQMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAFGRYITCNYRATKSV ; _entity_poly.pdbx_seq_one_letter_code_can ;TESIPEEMKQIVEEQGNKLHWAALLILMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTI MFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPIQANQYNSRATAFIKITVVWLISIGIAIPVPIKGI ETDVDNPNNITCVLTKERFGDFMLFGSLAAFFTPLAIMIVTYFLTIHALQKVRLLSGSRQTISNEQRASKVLGIVFFLFL LMWCPFFITNITLVLCDSCNQTTLQMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAFGRYITCNYRATKSV ; _entity_poly.pdbx_strand_id R _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 GLU n 1 3 SER n 1 4 ILE n 1 5 PRO n 1 6 GLU n 1 7 GLU n 1 8 MET n 1 9 LYS n 1 10 GLN n 1 11 ILE n 1 12 VAL n 1 13 GLU n 1 14 GLU n 1 15 GLN n 1 16 GLY n 1 17 ASN n 1 18 LYS n 1 19 LEU n 1 20 HIS n 1 21 TRP n 1 22 ALA n 1 23 ALA n 1 24 LEU n 1 25 LEU n 1 26 ILE n 1 27 LEU n 1 28 MET n 1 29 VAL n 1 30 ILE n 1 31 ILE n 1 32 PRO n 1 33 THR n 1 34 ILE n 1 35 GLY n 1 36 GLY n 1 37 ASN n 1 38 THR n 1 39 LEU n 1 40 VAL n 1 41 ILE n 1 42 LEU n 1 43 ALA n 1 44 VAL n 1 45 SER n 1 46 LEU n 1 47 GLU n 1 48 LYS n 1 49 LYS n 1 50 LEU n 1 51 GLN n 1 52 TYR n 1 53 ALA n 1 54 THR n 1 55 ASN n 1 56 TYR n 1 57 PHE n 1 58 LEU n 1 59 MET n 1 60 SER n 1 61 LEU n 1 62 ALA n 1 63 VAL n 1 64 ALA n 1 65 ASP n 1 66 LEU n 1 67 LEU n 1 68 VAL n 1 69 GLY n 1 70 LEU n 1 71 PHE n 1 72 VAL n 1 73 MET n 1 74 PRO n 1 75 ILE n 1 76 ALA n 1 77 LEU n 1 78 LEU n 1 79 THR n 1 80 ILE n 1 81 MET n 1 82 PHE n 1 83 GLU n 1 84 ALA n 1 85 MET n 1 86 TRP n 1 87 PRO n 1 88 LEU n 1 89 PRO n 1 90 LEU n 1 91 VAL n 1 92 LEU n 1 93 CYS n 1 94 PRO n 1 95 ALA n 1 96 TRP n 1 97 LEU n 1 98 PHE n 1 99 LEU n 1 100 ASP n 1 101 VAL n 1 102 LEU n 1 103 PHE n 1 104 SER n 1 105 THR n 1 106 ALA n 1 107 SER n 1 108 ILE n 1 109 TRP n 1 110 HIS n 1 111 LEU n 1 112 CYS n 1 113 ALA n 1 114 ILE n 1 115 SER n 1 116 VAL n 1 117 ASP n 1 118 ARG n 1 119 TYR n 1 120 ILE n 1 121 ALA n 1 122 ILE n 1 123 LYS n 1 124 LYS n 1 125 PRO n 1 126 ILE n 1 127 GLN n 1 128 ALA n 1 129 ASN n 1 130 GLN n 1 131 TYR n 1 132 ASN n 1 133 SER n 1 134 ARG n 1 135 ALA n 1 136 THR n 1 137 ALA n 1 138 PHE n 1 139 ILE n 1 140 LYS n 1 141 ILE n 1 142 THR n 1 143 VAL n 1 144 VAL n 1 145 TRP n 1 146 LEU n 1 147 ILE n 1 148 SER n 1 149 ILE n 1 150 GLY n 1 151 ILE n 1 152 ALA n 1 153 ILE n 1 154 PRO n 1 155 VAL n 1 156 PRO n 1 157 ILE n 1 158 LYS n 1 159 GLY n 1 160 ILE n 1 161 GLU n 1 162 THR n 1 163 ASP n 1 164 VAL n 1 165 ASP n 1 166 ASN n 1 167 PRO n 1 168 ASN n 1 169 ASN n 1 170 ILE n 1 171 THR n 1 172 CYS n 1 173 VAL n 1 174 LEU n 1 175 THR n 1 176 LYS n 1 177 GLU n 1 178 ARG n 1 179 PHE n 1 180 GLY n 1 181 ASP n 1 182 PHE n 1 183 MET n 1 184 LEU n 1 185 PHE n 1 186 GLY n 1 187 SER n 1 188 LEU n 1 189 ALA n 1 190 ALA n 1 191 PHE n 1 192 PHE n 1 193 THR n 1 194 PRO n 1 195 LEU n 1 196 ALA n 1 197 ILE n 1 198 MET n 1 199 ILE n 1 200 VAL n 1 201 THR n 1 202 TYR n 1 203 PHE n 1 204 LEU n 1 205 THR n 1 206 ILE n 1 207 HIS n 1 208 ALA n 1 209 LEU n 1 210 GLN n 1 211 LYS n 1 212 VAL n 1 213 ARG n 1 214 LEU n 1 215 LEU n 1 216 SER n 1 217 GLY n 1 218 SER n 1 219 ARG n 1 220 GLN n 1 221 THR n 1 222 ILE n 1 223 SER n 1 224 ASN n 1 225 GLU n 1 226 GLN n 1 227 ARG n 1 228 ALA n 1 229 SER n 1 230 LYS n 1 231 VAL n 1 232 LEU n 1 233 GLY n 1 234 ILE n 1 235 VAL n 1 236 PHE n 1 237 PHE n 1 238 LEU n 1 239 PHE n 1 240 LEU n 1 241 LEU n 1 242 MET n 1 243 TRP n 1 244 CYS n 1 245 PRO n 1 246 PHE n 1 247 PHE n 1 248 ILE n 1 249 THR n 1 250 ASN n 1 251 ILE n 1 252 THR n 1 253 LEU n 1 254 VAL n 1 255 LEU n 1 256 CYS n 1 257 ASP n 1 258 SER n 1 259 CYS n 1 260 ASN n 1 261 GLN n 1 262 THR n 1 263 THR n 1 264 LEU n 1 265 GLN n 1 266 MET n 1 267 LEU n 1 268 LEU n 1 269 GLU n 1 270 ILE n 1 271 PHE n 1 272 VAL n 1 273 TRP n 1 274 ILE n 1 275 GLY n 1 276 TYR n 1 277 VAL n 1 278 SER n 1 279 SER n 1 280 GLY n 1 281 VAL n 1 282 ASN n 1 283 PRO n 1 284 LEU n 1 285 VAL n 1 286 TYR n 1 287 THR n 1 288 LEU n 1 289 PHE n 1 290 ASN n 1 291 LYS n 1 292 THR n 1 293 PHE n 1 294 ARG n 1 295 ASP n 1 296 ALA n 1 297 PHE n 1 298 GLY n 1 299 ARG n 1 300 TYR n 1 301 ILE n 1 302 THR n 1 303 CYS n 1 304 ASN n 1 305 TYR n 1 306 ARG n 1 307 ALA n 1 308 THR n 1 309 LYS n 1 310 SER n 1 311 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 311 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene HTR2B _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code 5HT2B_HUMAN _struct_ref.pdbx_db_accession P41595 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TESIPEEMKQIVEEQGNKLHWAALLILMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTI MFEAMWPLPLVLCPAWLFLDVLFSTASIMHLCAISVDRYIAIKKPIQANQYNSRATAFIKITVVWLISIGIAIPVPIKGI ETDVDNPNNITCVLTKERFGDFMLFGSLAAFFTPLAIMIVTYFLTIHALQKKAYLVKNKPPQRLTWLTVSTVFQRDETPC SSPEKVAMLDGSRKDKALPNSGDETLMRRTSTIGKKSVQTISNEQRASKVLGIVFFLFLLMWCPFFITNITLVLCDSCNQ TTLQMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAFGRYITCNYRATKSV ; _struct_ref.pdbx_align_begin 36 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7SRQ _struct_ref_seq.pdbx_strand_id R _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 311 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P41595 _struct_ref_seq.db_align_beg 36 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 405 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 36 _struct_ref_seq.pdbx_auth_seq_align_end 405 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7SRQ TRP R 109 ? UNP P41595 MET 144 conflict 144 1 1 7SRQ ? R ? ? UNP P41595 LYS 246 deletion ? 2 1 7SRQ ? R ? ? UNP P41595 LYS 247 deletion ? 3 1 7SRQ ? R ? ? UNP P41595 ALA 248 deletion ? 4 1 7SRQ ? R ? ? UNP P41595 TYR 249 deletion ? 5 1 7SRQ ? R ? ? UNP P41595 LEU 250 deletion ? 6 1 7SRQ ? R ? ? UNP P41595 VAL 251 deletion ? 7 1 7SRQ ? R ? ? UNP P41595 LYS 252 deletion ? 8 1 7SRQ ? R ? ? UNP P41595 ASN 253 deletion ? 9 1 7SRQ ? R ? ? UNP P41595 LYS 254 deletion ? 10 1 7SRQ ? R ? ? UNP P41595 PRO 255 deletion ? 11 1 7SRQ ? R ? ? UNP P41595 PRO 256 deletion ? 12 1 7SRQ ? R ? ? UNP P41595 GLN 257 deletion ? 13 1 7SRQ ? R ? ? UNP P41595 ARG 258 deletion ? 14 1 7SRQ ? R ? ? UNP P41595 LEU 259 deletion ? 15 1 7SRQ ? R ? ? UNP P41595 THR 260 deletion ? 16 1 7SRQ ? R ? ? UNP P41595 TRP 261 deletion ? 17 1 7SRQ ? R ? ? UNP P41595 LEU 262 deletion ? 18 1 7SRQ ? R ? ? UNP P41595 THR 263 deletion ? 19 1 7SRQ ? R ? ? UNP P41595 VAL 264 deletion ? 20 1 7SRQ ? R ? ? UNP P41595 SER 265 deletion ? 21 1 7SRQ ? R ? ? UNP P41595 THR 266 deletion ? 22 1 7SRQ ? R ? ? UNP P41595 VAL 267 deletion ? 23 1 7SRQ ? R ? ? UNP P41595 PHE 268 deletion ? 24 1 7SRQ ? R ? ? UNP P41595 GLN 269 deletion ? 25 1 7SRQ ? R ? ? UNP P41595 ARG 270 deletion ? 26 1 7SRQ ? R ? ? UNP P41595 ASP 271 deletion ? 27 1 7SRQ ? R ? ? UNP P41595 GLU 272 deletion ? 28 1 7SRQ ? R ? ? UNP P41595 THR 273 deletion ? 29 1 7SRQ ? R ? ? UNP P41595 PRO 274 deletion ? 30 1 7SRQ ? R ? ? UNP P41595 CYS 275 deletion ? 31 1 7SRQ ? R ? ? UNP P41595 SER 276 deletion ? 32 1 7SRQ ? R ? ? UNP P41595 SER 277 deletion ? 33 1 7SRQ ? R ? ? UNP P41595 PRO 278 deletion ? 34 1 7SRQ ? R ? ? UNP P41595 GLU 279 deletion ? 35 1 7SRQ ARG R 213 ? UNP P41595 ALA 282 conflict 307 36 1 7SRQ LEU R 214 ? UNP P41595 MET 283 conflict 308 37 1 7SRQ SER R 216 ? UNP P41595 ASP 285 conflict 310 38 1 7SRQ ? R ? ? UNP P41595 LYS 289 deletion ? 39 1 7SRQ ? R ? ? UNP P41595 ASP 290 deletion ? 40 1 7SRQ ? R ? ? UNP P41595 LYS 291 deletion ? 41 1 7SRQ ? R ? ? UNP P41595 ALA 292 deletion ? 42 1 7SRQ ? R ? ? UNP P41595 LEU 293 deletion ? 43 1 7SRQ ? R ? ? UNP P41595 PRO 294 deletion ? 44 1 7SRQ ? R ? ? UNP P41595 ASN 295 deletion ? 45 1 7SRQ ? R ? ? UNP P41595 SER 296 deletion ? 46 1 7SRQ ? R ? ? UNP P41595 GLY 297 deletion ? 47 1 7SRQ ? R ? ? UNP P41595 ASP 298 deletion ? 48 1 7SRQ ? R ? ? UNP P41595 GLU 299 deletion ? 49 1 7SRQ ? R ? ? UNP P41595 THR 300 deletion ? 50 1 7SRQ ? R ? ? UNP P41595 LEU 301 deletion ? 51 1 7SRQ ? R ? ? UNP P41595 MET 302 deletion ? 52 1 7SRQ ? R ? ? UNP P41595 ARG 303 deletion ? 53 1 7SRQ ? R ? ? UNP P41595 ARG 304 deletion ? 54 1 7SRQ ? R ? ? UNP P41595 THR 305 deletion ? 55 1 7SRQ ? R ? ? UNP P41595 SER 306 deletion ? 56 1 7SRQ ? R ? ? UNP P41595 THR 307 deletion ? 57 1 7SRQ ? R ? ? UNP P41595 ILE 308 deletion ? 58 1 7SRQ ? R ? ? UNP P41595 GLY 309 deletion ? 59 1 7SRQ ? R ? ? UNP P41595 LYS 310 deletion ? 60 1 7SRQ ? R ? ? UNP P41595 LYS 311 deletion ? 61 1 7SRQ ? R ? ? UNP P41595 SER 312 deletion ? 62 1 7SRQ ? R ? ? UNP P41595 VAL 313 deletion ? 63 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 7LD non-polymer . '(8alpha)-N,N-diethyl-6-methyl-9,10-didehydroergoline-8-carboxamide' 'Lysergic acid diethylamide' 'C20 H25 N3 O' 323.432 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7SRQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7SRQ _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 2037 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.677 ? 2798 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 4.475 ? 271 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.039 ? 356 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.006 ? 326 ? f_plane_restr ? ? # _struct.entry_id 7SRQ _struct.title '5-HT2B receptor bound to LSD obtained by cryo-electron microscopy (cryoEM)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7SRQ _struct_keywords.text '5-HT2B receptor, serotonin receptor, GPCR, Lysergic acid diethylamide, LSD, cryoEM, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TRP A 21 ? GLU A 47 ? TRP R 56 GLU R 82 1 ? 27 HELX_P HELX_P2 AA2 TYR A 52 ? PHE A 82 ? TYR R 87 PHE R 117 1 ? 31 HELX_P HELX_P3 AA3 VAL A 91 ? LYS A 124 ? VAL R 126 LYS R 159 1 ? 34 HELX_P HELX_P4 AA4 ARG A 134 ? ILE A 153 ? ARG R 169 ILE R 188 1 ? 20 HELX_P HELX_P5 AA5 ILE A 153 ? LYS A 158 ? ILE R 188 LYS R 193 1 ? 6 HELX_P HELX_P6 AA6 ASN A 166 ? ILE A 170 ? ASN R 201 ILE R 205 5 ? 5 HELX_P HELX_P7 AA7 GLY A 180 ? PHE A 191 ? GLY R 215 PHE R 226 1 ? 12 HELX_P HELX_P8 AA8 PHE A 191 ? HIS A 207 ? PHE R 226 HIS R 242 1 ? 17 HELX_P HELX_P9 AA9 SER A 229 ? PHE A 239 ? SER R 323 PHE R 333 1 ? 11 HELX_P HELX_P10 AB1 LEU A 240 ? MET A 242 ? LEU R 334 MET R 336 5 ? 3 HELX_P HELX_P11 AB2 TRP A 243 ? CYS A 256 ? TRP R 337 CYS R 350 1 ? 14 HELX_P HELX_P12 AB3 ASN A 260 ? LEU A 288 ? ASN R 354 LEU R 382 1 ? 29 HELX_P HELX_P13 AB4 ASN A 290 ? TYR A 300 ? ASN R 384 TYR R 394 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 93 SG ? ? ? 1_555 A CYS 172 SG ? ? R CYS 128 R CYS 207 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf2 disulf ? ? A CYS 256 SG ? ? ? 1_555 A CYS 259 SG ? ? R CYS 350 R CYS 353 1_555 ? ? ? ? ? ? ? 2.032 ? ? covale1 covale one ? A ASN 169 ND2 ? ? ? 1_555 B NAG . C1 ? ? R ASN 204 R NAG 501 1_555 ? ? ? ? ? ? ? 1.443 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _atom_sites.entry_id 7SRQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 36 ? ? ? R . n A 1 2 GLU 2 37 ? ? ? R . n A 1 3 SER 3 38 ? ? ? R . n A 1 4 ILE 4 39 ? ? ? R . n A 1 5 PRO 5 40 ? ? ? R . n A 1 6 GLU 6 41 ? ? ? R . n A 1 7 GLU 7 42 ? ? ? R . n A 1 8 MET 8 43 ? ? ? R . n A 1 9 LYS 9 44 ? ? ? R . n A 1 10 GLN 10 45 ? ? ? R . n A 1 11 ILE 11 46 ? ? ? R . n A 1 12 VAL 12 47 ? ? ? R . n A 1 13 GLU 13 48 ? ? ? R . n A 1 14 GLU 14 49 ? ? ? R . n A 1 15 GLN 15 50 ? ? ? R . n A 1 16 GLY 16 51 ? ? ? R . n A 1 17 ASN 17 52 ? ? ? R . n A 1 18 LYS 18 53 ? ? ? R . n A 1 19 LEU 19 54 ? ? ? R . n A 1 20 HIS 20 55 ? ? ? R . n A 1 21 TRP 21 56 56 TRP TRP R . n A 1 22 ALA 22 57 57 ALA ALA R . n A 1 23 ALA 23 58 58 ALA ALA R . n A 1 24 LEU 24 59 59 LEU LEU R . n A 1 25 LEU 25 60 60 LEU LEU R . n A 1 26 ILE 26 61 61 ILE ILE R . n A 1 27 LEU 27 62 62 LEU LEU R . n A 1 28 MET 28 63 63 MET MET R . n A 1 29 VAL 29 64 64 VAL VAL R . n A 1 30 ILE 30 65 65 ILE ILE R . n A 1 31 ILE 31 66 66 ILE ILE R . n A 1 32 PRO 32 67 67 PRO PRO R . n A 1 33 THR 33 68 68 THR THR R . n A 1 34 ILE 34 69 69 ILE ILE R . n A 1 35 GLY 35 70 70 GLY GLY R . n A 1 36 GLY 36 71 71 GLY GLY R . n A 1 37 ASN 37 72 72 ASN ASN R . n A 1 38 THR 38 73 73 THR THR R . n A 1 39 LEU 39 74 74 LEU LEU R . n A 1 40 VAL 40 75 75 VAL VAL R . n A 1 41 ILE 41 76 76 ILE ILE R . n A 1 42 LEU 42 77 77 LEU LEU R . n A 1 43 ALA 43 78 78 ALA ALA R . n A 1 44 VAL 44 79 79 VAL VAL R . n A 1 45 SER 45 80 80 SER SER R . n A 1 46 LEU 46 81 81 LEU LEU R . n A 1 47 GLU 47 82 82 GLU GLU R . n A 1 48 LYS 48 83 83 LYS LYS R . n A 1 49 LYS 49 84 84 LYS LYS R . n A 1 50 LEU 50 85 85 LEU LEU R . n A 1 51 GLN 51 86 86 GLN GLN R . n A 1 52 TYR 52 87 87 TYR TYR R . n A 1 53 ALA 53 88 88 ALA ALA R . n A 1 54 THR 54 89 89 THR THR R . n A 1 55 ASN 55 90 90 ASN ASN R . n A 1 56 TYR 56 91 91 TYR TYR R . n A 1 57 PHE 57 92 92 PHE PHE R . n A 1 58 LEU 58 93 93 LEU LEU R . n A 1 59 MET 59 94 94 MET MET R . n A 1 60 SER 60 95 95 SER SER R . n A 1 61 LEU 61 96 96 LEU LEU R . n A 1 62 ALA 62 97 97 ALA ALA R . n A 1 63 VAL 63 98 98 VAL VAL R . n A 1 64 ALA 64 99 99 ALA ALA R . n A 1 65 ASP 65 100 100 ASP ASP R . n A 1 66 LEU 66 101 101 LEU LEU R . n A 1 67 LEU 67 102 102 LEU LEU R . n A 1 68 VAL 68 103 103 VAL VAL R . n A 1 69 GLY 69 104 104 GLY GLY R . n A 1 70 LEU 70 105 105 LEU LEU R . n A 1 71 PHE 71 106 106 PHE PHE R . n A 1 72 VAL 72 107 107 VAL VAL R . n A 1 73 MET 73 108 108 MET MET R . n A 1 74 PRO 74 109 109 PRO PRO R . n A 1 75 ILE 75 110 110 ILE ILE R . n A 1 76 ALA 76 111 111 ALA ALA R . n A 1 77 LEU 77 112 112 LEU LEU R . n A 1 78 LEU 78 113 113 LEU LEU R . n A 1 79 THR 79 114 114 THR THR R . n A 1 80 ILE 80 115 115 ILE ILE R . n A 1 81 MET 81 116 116 MET MET R . n A 1 82 PHE 82 117 117 PHE PHE R . n A 1 83 GLU 83 118 118 GLU GLU R . n A 1 84 ALA 84 119 119 ALA ALA R . n A 1 85 MET 85 120 120 MET MET R . n A 1 86 TRP 86 121 121 TRP TRP R . n A 1 87 PRO 87 122 122 PRO PRO R . n A 1 88 LEU 88 123 123 LEU LEU R . n A 1 89 PRO 89 124 124 PRO PRO R . n A 1 90 LEU 90 125 125 LEU LEU R . n A 1 91 VAL 91 126 126 VAL VAL R . n A 1 92 LEU 92 127 127 LEU LEU R . n A 1 93 CYS 93 128 128 CYS CYS R . n A 1 94 PRO 94 129 129 PRO PRO R . n A 1 95 ALA 95 130 130 ALA ALA R . n A 1 96 TRP 96 131 131 TRP TRP R . n A 1 97 LEU 97 132 132 LEU LEU R . n A 1 98 PHE 98 133 133 PHE PHE R . n A 1 99 LEU 99 134 134 LEU LEU R . n A 1 100 ASP 100 135 135 ASP ASP R . n A 1 101 VAL 101 136 136 VAL VAL R . n A 1 102 LEU 102 137 137 LEU LEU R . n A 1 103 PHE 103 138 138 PHE PHE R . n A 1 104 SER 104 139 139 SER SER R . n A 1 105 THR 105 140 140 THR THR R . n A 1 106 ALA 106 141 141 ALA ALA R . n A 1 107 SER 107 142 142 SER SER R . n A 1 108 ILE 108 143 143 ILE ILE R . n A 1 109 TRP 109 144 144 TRP TRP R . n A 1 110 HIS 110 145 145 HIS HIS R . n A 1 111 LEU 111 146 146 LEU LEU R . n A 1 112 CYS 112 147 147 CYS CYS R . n A 1 113 ALA 113 148 148 ALA ALA R . n A 1 114 ILE 114 149 149 ILE ILE R . n A 1 115 SER 115 150 150 SER SER R . n A 1 116 VAL 116 151 151 VAL VAL R . n A 1 117 ASP 117 152 152 ASP ASP R . n A 1 118 ARG 118 153 153 ARG ARG R . n A 1 119 TYR 119 154 154 TYR TYR R . n A 1 120 ILE 120 155 155 ILE ILE R . n A 1 121 ALA 121 156 156 ALA ALA R . n A 1 122 ILE 122 157 157 ILE ILE R . n A 1 123 LYS 123 158 158 LYS LYS R . n A 1 124 LYS 124 159 159 LYS LYS R . n A 1 125 PRO 125 160 160 PRO PRO R . n A 1 126 ILE 126 161 ? ? ? R . n A 1 127 GLN 127 162 ? ? ? R . n A 1 128 ALA 128 163 ? ? ? R . n A 1 129 ASN 129 164 ? ? ? R . n A 1 130 GLN 130 165 ? ? ? R . n A 1 131 TYR 131 166 ? ? ? R . n A 1 132 ASN 132 167 ? ? ? R . n A 1 133 SER 133 168 168 SER SER R . n A 1 134 ARG 134 169 169 ARG ARG R . n A 1 135 ALA 135 170 170 ALA ALA R . n A 1 136 THR 136 171 171 THR THR R . n A 1 137 ALA 137 172 172 ALA ALA R . n A 1 138 PHE 138 173 173 PHE PHE R . n A 1 139 ILE 139 174 174 ILE ILE R . n A 1 140 LYS 140 175 175 LYS LYS R . n A 1 141 ILE 141 176 176 ILE ILE R . n A 1 142 THR 142 177 177 THR THR R . n A 1 143 VAL 143 178 178 VAL VAL R . n A 1 144 VAL 144 179 179 VAL VAL R . n A 1 145 TRP 145 180 180 TRP TRP R . n A 1 146 LEU 146 181 181 LEU LEU R . n A 1 147 ILE 147 182 182 ILE ILE R . n A 1 148 SER 148 183 183 SER SER R . n A 1 149 ILE 149 184 184 ILE ILE R . n A 1 150 GLY 150 185 185 GLY GLY R . n A 1 151 ILE 151 186 186 ILE ILE R . n A 1 152 ALA 152 187 187 ALA ALA R . n A 1 153 ILE 153 188 188 ILE ILE R . n A 1 154 PRO 154 189 189 PRO PRO R . n A 1 155 VAL 155 190 190 VAL VAL R . n A 1 156 PRO 156 191 191 PRO PRO R . n A 1 157 ILE 157 192 192 ILE ILE R . n A 1 158 LYS 158 193 193 LYS LYS R . n A 1 159 GLY 159 194 194 GLY GLY R . n A 1 160 ILE 160 195 195 ILE ILE R . n A 1 161 GLU 161 196 196 GLU GLU R . n A 1 162 THR 162 197 197 THR THR R . n A 1 163 ASP 163 198 198 ASP ASP R . n A 1 164 VAL 164 199 199 VAL VAL R . n A 1 165 ASP 165 200 200 ASP ASP R . n A 1 166 ASN 166 201 201 ASN ASN R . n A 1 167 PRO 167 202 202 PRO PRO R . n A 1 168 ASN 168 203 203 ASN ASN R . n A 1 169 ASN 169 204 204 ASN ASN R . n A 1 170 ILE 170 205 205 ILE ILE R . n A 1 171 THR 171 206 206 THR THR R . n A 1 172 CYS 172 207 207 CYS CYS R . n A 1 173 VAL 173 208 208 VAL VAL R . n A 1 174 LEU 174 209 209 LEU LEU R . n A 1 175 THR 175 210 210 THR THR R . n A 1 176 LYS 176 211 211 LYS LYS R . n A 1 177 GLU 177 212 212 GLU GLU R . n A 1 178 ARG 178 213 213 ARG ARG R . n A 1 179 PHE 179 214 214 PHE PHE R . n A 1 180 GLY 180 215 215 GLY GLY R . n A 1 181 ASP 181 216 216 ASP ASP R . n A 1 182 PHE 182 217 217 PHE PHE R . n A 1 183 MET 183 218 218 MET MET R . n A 1 184 LEU 184 219 219 LEU LEU R . n A 1 185 PHE 185 220 220 PHE PHE R . n A 1 186 GLY 186 221 221 GLY GLY R . n A 1 187 SER 187 222 222 SER SER R . n A 1 188 LEU 188 223 223 LEU LEU R . n A 1 189 ALA 189 224 224 ALA ALA R . n A 1 190 ALA 190 225 225 ALA ALA R . n A 1 191 PHE 191 226 226 PHE PHE R . n A 1 192 PHE 192 227 227 PHE PHE R . n A 1 193 THR 193 228 228 THR THR R . n A 1 194 PRO 194 229 229 PRO PRO R . n A 1 195 LEU 195 230 230 LEU LEU R . n A 1 196 ALA 196 231 231 ALA ALA R . n A 1 197 ILE 197 232 232 ILE ILE R . n A 1 198 MET 198 233 233 MET MET R . n A 1 199 ILE 199 234 234 ILE ILE R . n A 1 200 VAL 200 235 235 VAL VAL R . n A 1 201 THR 201 236 236 THR THR R . n A 1 202 TYR 202 237 237 TYR TYR R . n A 1 203 PHE 203 238 238 PHE PHE R . n A 1 204 LEU 204 239 239 LEU LEU R . n A 1 205 THR 205 240 240 THR THR R . n A 1 206 ILE 206 241 241 ILE ILE R . n A 1 207 HIS 207 242 242 HIS HIS R . n A 1 208 ALA 208 243 243 ALA ALA R . n A 1 209 LEU 209 303 ? ? ? R . n A 1 210 GLN 210 304 ? ? ? R . n A 1 211 LYS 211 305 ? ? ? R . n A 1 212 VAL 212 306 ? ? ? R . n A 1 213 ARG 213 307 ? ? ? R . n A 1 214 LEU 214 308 ? ? ? R . n A 1 215 LEU 215 309 ? ? ? R . n A 1 216 SER 216 310 ? ? ? R . n A 1 217 GLY 217 311 ? ? ? R . n A 1 218 SER 218 312 ? ? ? R . n A 1 219 ARG 219 313 ? ? ? R . n A 1 220 GLN 220 314 ? ? ? R . n A 1 221 THR 221 315 ? ? ? R . n A 1 222 ILE 222 316 ? ? ? R . n A 1 223 SER 223 317 ? ? ? R . n A 1 224 ASN 224 318 ? ? ? R . n A 1 225 GLU 225 319 ? ? ? R . n A 1 226 GLN 226 320 ? ? ? R . n A 1 227 ARG 227 321 ? ? ? R . n A 1 228 ALA 228 322 322 ALA ALA R . n A 1 229 SER 229 323 323 SER SER R . n A 1 230 LYS 230 324 324 LYS LYS R . n A 1 231 VAL 231 325 325 VAL VAL R . n A 1 232 LEU 232 326 326 LEU LEU R . n A 1 233 GLY 233 327 327 GLY GLY R . n A 1 234 ILE 234 328 328 ILE ILE R . n A 1 235 VAL 235 329 329 VAL VAL R . n A 1 236 PHE 236 330 330 PHE PHE R . n A 1 237 PHE 237 331 331 PHE PHE R . n A 1 238 LEU 238 332 332 LEU LEU R . n A 1 239 PHE 239 333 333 PHE PHE R . n A 1 240 LEU 240 334 334 LEU LEU R . n A 1 241 LEU 241 335 335 LEU LEU R . n A 1 242 MET 242 336 336 MET MET R . n A 1 243 TRP 243 337 337 TRP TRP R . n A 1 244 CYS 244 338 338 CYS CYS R . n A 1 245 PRO 245 339 339 PRO PRO R . n A 1 246 PHE 246 340 340 PHE PHE R . n A 1 247 PHE 247 341 341 PHE PHE R . n A 1 248 ILE 248 342 342 ILE ILE R . n A 1 249 THR 249 343 343 THR THR R . n A 1 250 ASN 250 344 344 ASN ASN R . n A 1 251 ILE 251 345 345 ILE ILE R . n A 1 252 THR 252 346 346 THR THR R . n A 1 253 LEU 253 347 347 LEU LEU R . n A 1 254 VAL 254 348 348 VAL VAL R . n A 1 255 LEU 255 349 349 LEU LEU R . n A 1 256 CYS 256 350 350 CYS CYS R . n A 1 257 ASP 257 351 351 ASP ASP R . n A 1 258 SER 258 352 352 SER SER R . n A 1 259 CYS 259 353 353 CYS CYS R . n A 1 260 ASN 260 354 354 ASN ASN R . n A 1 261 GLN 261 355 355 GLN GLN R . n A 1 262 THR 262 356 356 THR THR R . n A 1 263 THR 263 357 357 THR THR R . n A 1 264 LEU 264 358 358 LEU LEU R . n A 1 265 GLN 265 359 359 GLN GLN R . n A 1 266 MET 266 360 360 MET MET R . n A 1 267 LEU 267 361 361 LEU LEU R . n A 1 268 LEU 268 362 362 LEU LEU R . n A 1 269 GLU 269 363 363 GLU GLU R . n A 1 270 ILE 270 364 364 ILE ILE R . n A 1 271 PHE 271 365 365 PHE PHE R . n A 1 272 VAL 272 366 366 VAL VAL R . n A 1 273 TRP 273 367 367 TRP TRP R . n A 1 274 ILE 274 368 368 ILE ILE R . n A 1 275 GLY 275 369 369 GLY GLY R . n A 1 276 TYR 276 370 370 TYR TYR R . n A 1 277 VAL 277 371 371 VAL VAL R . n A 1 278 SER 278 372 372 SER SER R . n A 1 279 SER 279 373 373 SER SER R . n A 1 280 GLY 280 374 374 GLY GLY R . n A 1 281 VAL 281 375 375 VAL VAL R . n A 1 282 ASN 282 376 376 ASN ASN R . n A 1 283 PRO 283 377 377 PRO PRO R . n A 1 284 LEU 284 378 378 LEU LEU R . n A 1 285 VAL 285 379 379 VAL VAL R . n A 1 286 TYR 286 380 380 TYR TYR R . n A 1 287 THR 287 381 381 THR THR R . n A 1 288 LEU 288 382 382 LEU LEU R . n A 1 289 PHE 289 383 383 PHE PHE R . n A 1 290 ASN 290 384 384 ASN ASN R . n A 1 291 LYS 291 385 385 LYS LYS R . n A 1 292 THR 292 386 386 THR THR R . n A 1 293 PHE 293 387 387 PHE PHE R . n A 1 294 ARG 294 388 388 ARG ARG R . n A 1 295 ASP 295 389 389 ASP ASP R . n A 1 296 ALA 296 390 390 ALA ALA R . n A 1 297 PHE 297 391 391 PHE PHE R . n A 1 298 GLY 298 392 392 GLY GLY R . n A 1 299 ARG 299 393 393 ARG ARG R . n A 1 300 TYR 300 394 394 TYR TYR R . n A 1 301 ILE 301 395 ? ? ? R . n A 1 302 THR 302 396 ? ? ? R . n A 1 303 CYS 303 397 ? ? ? R . n A 1 304 ASN 304 398 ? ? ? R . n A 1 305 TYR 305 399 ? ? ? R . n A 1 306 ARG 306 400 ? ? ? R . n A 1 307 ALA 307 401 ? ? ? R . n A 1 308 THR 308 402 ? ? ? R . n A 1 309 LYS 309 403 ? ? ? R . n A 1 310 SER 310 404 ? ? ? R . n A 1 311 VAL 311 405 ? ? ? R . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email yiorgo@stanford.edu _pdbx_contact_author.name_first Georgios _pdbx_contact_author.name_last Skiniotis _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0238-7846 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 501 602 NAG NAG R . C 3 7LD 1 502 603 7LD 7LD R . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-09-21 2 'Structure model' 1 1 2022-10-05 3 'Structure model' 1 2 2022-10-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.pdbx_synonyms' 2 3 'Structure model' '_citation.journal_volume' 3 3 'Structure model' '_citation.page_first' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7SRQ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _em_3d_fitting.entry_id 7SRQ _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7SRQ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 665475 _em_3d_reconstruction.resolution 2.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name '5-HT2B receptor bound to LSD' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7SRQ _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 70 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification 55000 _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 1800 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'UltrAuFoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7SRQ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7SRQ _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU R 118 ? ? -68.13 97.94 2 1 LYS R 324 ? ? -93.39 -61.07 3 1 LEU R 335 ? ? -36.66 -35.50 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 R LEU 59 ? CG ? A LEU 24 CG 2 1 Y 1 R LEU 59 ? CD1 ? A LEU 24 CD1 3 1 Y 1 R LEU 59 ? CD2 ? A LEU 24 CD2 4 1 Y 1 R LEU 60 ? CG ? A LEU 25 CG 5 1 Y 1 R LEU 60 ? CD1 ? A LEU 25 CD1 6 1 Y 1 R LEU 60 ? CD2 ? A LEU 25 CD2 7 1 Y 1 R LEU 62 ? CG ? A LEU 27 CG 8 1 Y 1 R LEU 62 ? CD1 ? A LEU 27 CD1 9 1 Y 1 R LEU 62 ? CD2 ? A LEU 27 CD2 10 1 Y 1 R LEU 77 ? CG ? A LEU 42 CG 11 1 Y 1 R LEU 77 ? CD1 ? A LEU 42 CD1 12 1 Y 1 R LEU 77 ? CD2 ? A LEU 42 CD2 13 1 Y 1 R LEU 81 ? CG ? A LEU 46 CG 14 1 Y 1 R LEU 81 ? CD1 ? A LEU 46 CD1 15 1 Y 1 R LEU 81 ? CD2 ? A LEU 46 CD2 16 1 Y 1 R GLU 82 ? CG ? A GLU 47 CG 17 1 Y 1 R GLU 82 ? CD ? A GLU 47 CD 18 1 Y 1 R GLU 82 ? OE1 ? A GLU 47 OE1 19 1 Y 1 R GLU 82 ? OE2 ? A GLU 47 OE2 20 1 Y 1 R LYS 83 ? CG ? A LYS 48 CG 21 1 Y 1 R LYS 83 ? CD ? A LYS 48 CD 22 1 Y 1 R LYS 83 ? CE ? A LYS 48 CE 23 1 Y 1 R LYS 83 ? NZ ? A LYS 48 NZ 24 1 Y 1 R LYS 84 ? CG ? A LYS 49 CG 25 1 Y 1 R LYS 84 ? CD ? A LYS 49 CD 26 1 Y 1 R LYS 84 ? CE ? A LYS 49 CE 27 1 Y 1 R LYS 84 ? NZ ? A LYS 49 NZ 28 1 Y 1 R GLU 118 ? CG ? A GLU 83 CG 29 1 Y 1 R GLU 118 ? CD ? A GLU 83 CD 30 1 Y 1 R GLU 118 ? OE1 ? A GLU 83 OE1 31 1 Y 1 R GLU 118 ? OE2 ? A GLU 83 OE2 32 1 Y 1 R LYS 159 ? CG ? A LYS 124 CG 33 1 Y 1 R LYS 159 ? CD ? A LYS 124 CD 34 1 Y 1 R LYS 159 ? CE ? A LYS 124 CE 35 1 Y 1 R LYS 159 ? NZ ? A LYS 124 NZ 36 1 Y 1 R ARG 169 ? CG ? A ARG 134 CG 37 1 Y 1 R ARG 169 ? CD ? A ARG 134 CD 38 1 Y 1 R ARG 169 ? NE ? A ARG 134 NE 39 1 Y 1 R ARG 169 ? CZ ? A ARG 134 CZ 40 1 Y 1 R ARG 169 ? NH1 ? A ARG 134 NH1 41 1 Y 1 R ARG 169 ? NH2 ? A ARG 134 NH2 42 1 Y 1 R ILE 176 ? CG1 ? A ILE 141 CG1 43 1 Y 1 R ILE 176 ? CG2 ? A ILE 141 CG2 44 1 Y 1 R ILE 176 ? CD1 ? A ILE 141 CD1 45 1 Y 1 R PHE 238 ? CG ? A PHE 203 CG 46 1 Y 1 R PHE 238 ? CD1 ? A PHE 203 CD1 47 1 Y 1 R PHE 238 ? CD2 ? A PHE 203 CD2 48 1 Y 1 R PHE 238 ? CE1 ? A PHE 203 CE1 49 1 Y 1 R PHE 238 ? CE2 ? A PHE 203 CE2 50 1 Y 1 R PHE 238 ? CZ ? A PHE 203 CZ 51 1 Y 1 R LYS 324 ? CG ? A LYS 230 CG 52 1 Y 1 R LYS 324 ? CD ? A LYS 230 CD 53 1 Y 1 R LYS 324 ? CE ? A LYS 230 CE 54 1 Y 1 R LYS 324 ? NZ ? A LYS 230 NZ 55 1 Y 1 R VAL 325 ? CG1 ? A VAL 231 CG1 56 1 Y 1 R VAL 325 ? CG2 ? A VAL 231 CG2 57 1 Y 1 R VAL 329 ? CG1 ? A VAL 235 CG1 58 1 Y 1 R VAL 329 ? CG2 ? A VAL 235 CG2 59 1 Y 1 R PHE 333 ? CG ? A PHE 239 CG 60 1 Y 1 R PHE 333 ? CD1 ? A PHE 239 CD1 61 1 Y 1 R PHE 333 ? CD2 ? A PHE 239 CD2 62 1 Y 1 R PHE 333 ? CE1 ? A PHE 239 CE1 63 1 Y 1 R PHE 333 ? CE2 ? A PHE 239 CE2 64 1 Y 1 R PHE 333 ? CZ ? A PHE 239 CZ 65 1 Y 1 R ASP 351 ? CG ? A ASP 257 CG 66 1 Y 1 R ASP 351 ? OD1 ? A ASP 257 OD1 67 1 Y 1 R ASP 351 ? OD2 ? A ASP 257 OD2 68 1 Y 1 R MET 360 ? CG ? A MET 266 CG 69 1 Y 1 R MET 360 ? SD ? A MET 266 SD 70 1 Y 1 R MET 360 ? CE ? A MET 266 CE 71 1 Y 1 R GLU 363 ? CG ? A GLU 269 CG 72 1 Y 1 R GLU 363 ? CD ? A GLU 269 CD 73 1 Y 1 R GLU 363 ? OE1 ? A GLU 269 OE1 74 1 Y 1 R GLU 363 ? OE2 ? A GLU 269 OE2 75 1 Y 1 R LEU 378 ? CG ? A LEU 284 CG 76 1 Y 1 R LEU 378 ? CD1 ? A LEU 284 CD1 77 1 Y 1 R LEU 378 ? CD2 ? A LEU 284 CD2 78 1 Y 1 R ARG 393 ? CG ? A ARG 299 CG 79 1 Y 1 R ARG 393 ? CD ? A ARG 299 CD 80 1 Y 1 R ARG 393 ? NE ? A ARG 299 NE 81 1 Y 1 R ARG 393 ? CZ ? A ARG 299 CZ 82 1 Y 1 R ARG 393 ? NH1 ? A ARG 299 NH1 83 1 Y 1 R ARG 393 ? NH2 ? A ARG 299 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 R THR 36 ? A THR 1 2 1 Y 1 R GLU 37 ? A GLU 2 3 1 Y 1 R SER 38 ? A SER 3 4 1 Y 1 R ILE 39 ? A ILE 4 5 1 Y 1 R PRO 40 ? A PRO 5 6 1 Y 1 R GLU 41 ? A GLU 6 7 1 Y 1 R GLU 42 ? A GLU 7 8 1 Y 1 R MET 43 ? A MET 8 9 1 Y 1 R LYS 44 ? A LYS 9 10 1 Y 1 R GLN 45 ? A GLN 10 11 1 Y 1 R ILE 46 ? A ILE 11 12 1 Y 1 R VAL 47 ? A VAL 12 13 1 Y 1 R GLU 48 ? A GLU 13 14 1 Y 1 R GLU 49 ? A GLU 14 15 1 Y 1 R GLN 50 ? A GLN 15 16 1 Y 1 R GLY 51 ? A GLY 16 17 1 Y 1 R ASN 52 ? A ASN 17 18 1 Y 1 R LYS 53 ? A LYS 18 19 1 Y 1 R LEU 54 ? A LEU 19 20 1 Y 1 R HIS 55 ? A HIS 20 21 1 Y 1 R ILE 161 ? A ILE 126 22 1 Y 1 R GLN 162 ? A GLN 127 23 1 Y 1 R ALA 163 ? A ALA 128 24 1 Y 1 R ASN 164 ? A ASN 129 25 1 Y 1 R GLN 165 ? A GLN 130 26 1 Y 1 R TYR 166 ? A TYR 131 27 1 Y 1 R ASN 167 ? A ASN 132 28 1 Y 1 R LEU 303 ? A LEU 209 29 1 Y 1 R GLN 304 ? A GLN 210 30 1 Y 1 R LYS 305 ? A LYS 211 31 1 Y 1 R VAL 306 ? A VAL 212 32 1 Y 1 R ARG 307 ? A ARG 213 33 1 Y 1 R LEU 308 ? A LEU 214 34 1 Y 1 R LEU 309 ? A LEU 215 35 1 Y 1 R SER 310 ? A SER 216 36 1 Y 1 R GLY 311 ? A GLY 217 37 1 Y 1 R SER 312 ? A SER 218 38 1 Y 1 R ARG 313 ? A ARG 219 39 1 Y 1 R GLN 314 ? A GLN 220 40 1 Y 1 R THR 315 ? A THR 221 41 1 Y 1 R ILE 316 ? A ILE 222 42 1 Y 1 R SER 317 ? A SER 223 43 1 Y 1 R ASN 318 ? A ASN 224 44 1 Y 1 R GLU 319 ? A GLU 225 45 1 Y 1 R GLN 320 ? A GLN 226 46 1 Y 1 R ARG 321 ? A ARG 227 47 1 Y 1 R ILE 395 ? A ILE 301 48 1 Y 1 R THR 396 ? A THR 302 49 1 Y 1 R CYS 397 ? A CYS 303 50 1 Y 1 R ASN 398 ? A ASN 304 51 1 Y 1 R TYR 399 ? A TYR 305 52 1 Y 1 R ARG 400 ? A ARG 306 53 1 Y 1 R ALA 401 ? A ALA 307 54 1 Y 1 R THR 402 ? A THR 308 55 1 Y 1 R LYS 403 ? A LYS 309 56 1 Y 1 R SER 404 ? A SER 310 57 1 Y 1 R VAL 405 ? A VAL 311 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 7108 _em_entity_assembly_recombinant.organism 'Spodoptera frugiperda' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 1.23 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 8491352 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'SYMMETRY DETERMINATION' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? SerialEM ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? cryoSPARC 3.2 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? cryoSPARC 3.2 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? cryoSPARC 3.2 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? cryoSPARC 3.2 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 6.5 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Other government' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 7LD _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 7LD _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 '(8alpha)-N,N-diethyl-6-methyl-9,10-didehydroergoline-8-carboxamide' 7LD # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #