HEADER HYDROLASE/ANTIBIOTIC 09-NOV-21 7SS7 TITLE CRYSTAL STRUCTURE OF KLEBSIELLA LPXH IN COMPLEX WITH JH-LPH-50 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-2,3-DIACYLGLUCOSAMINE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-2,3-DIACYLGLUCOSAMINE DIPHOSPHATASE; COMPND 5 EC: 3.6.1.54; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: LPXH_1, LPXH, C3483_19950, NCTC9128_00880, SOURCE 5 SAMEA104305404_03891; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LPXH, LIPID A, LPS, ANTIBIOTIC, GRAM-NEGATIVE BACTERIA, HYDROLASE- KEYWDS 2 ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.CHO,C.S.COCHRANE,P.ZHOU REVDAT 4 25-OCT-23 7SS7 1 REMARK REVDAT 3 14-JUN-23 7SS7 1 JRNL REVDAT 2 19-APR-23 7SS7 1 JRNL REVDAT 1 12-APR-23 7SS7 0 JRNL AUTH S.H.KWAK,C.SKYLER COCHRANE,J.CHO,P.A.DOME,A.F.ENNIS,J.H.KIM, JRNL AUTH 2 P.ZHOU,J.HONG JRNL TITL DEVELOPMENT OF LPXH INHIBITORS CHELATING THE ACTIVE SITE JRNL TITL 2 DIMANGANESE METAL CLUSTER OF LPXH. JRNL REF CHEMMEDCHEM V. 18 00023 2023 JRNL REFN ESSN 1860-7187 JRNL PMID 37014664 JRNL DOI 10.1002/CMDC.202300023 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3200 - 4.0700 1.00 2816 149 0.1735 0.1901 REMARK 3 2 4.0700 - 3.2300 1.00 2722 143 0.1495 0.1692 REMARK 3 3 3.2300 - 2.8200 1.00 2696 142 0.1715 0.1804 REMARK 3 4 2.8200 - 2.5600 1.00 2694 142 0.1629 0.1843 REMARK 3 5 2.5600 - 2.3800 1.00 2697 142 0.1658 0.2100 REMARK 3 6 2.3800 - 2.2400 1.00 2667 140 0.1567 0.1772 REMARK 3 7 2.2400 - 2.1300 1.00 2664 140 0.1567 0.1942 REMARK 3 8 2.1300 - 2.0300 1.00 2688 142 0.1602 0.2095 REMARK 3 9 2.0300 - 1.9600 1.00 2654 139 0.1781 0.2060 REMARK 3 10 1.9600 - 1.8900 1.00 2663 141 0.1851 0.2381 REMARK 3 11 1.8900 - 1.8300 1.00 2663 140 0.1755 0.2297 REMARK 3 12 1.8300 - 1.7800 1.00 2638 139 0.2109 0.2504 REMARK 3 13 1.7800 - 1.7300 1.00 2664 140 0.2738 0.2748 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.183 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.466 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2125 REMARK 3 ANGLE : 0.881 2896 REMARK 3 CHIRALITY : 0.062 300 REMARK 3 PLANARITY : 0.008 384 REMARK 3 DIHEDRAL : 17.296 304 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.6472 -31.0841 -1.1757 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.1386 REMARK 3 T33: 0.1491 T12: 0.0212 REMARK 3 T13: -0.0021 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 2.9299 L22: 2.9855 REMARK 3 L33: 2.6727 L12: -1.0613 REMARK 3 L13: 0.5567 L23: -1.2473 REMARK 3 S TENSOR REMARK 3 S11: 0.0672 S12: 0.2004 S13: -0.2014 REMARK 3 S21: -0.3703 S22: -0.0941 S23: 0.0526 REMARK 3 S31: 0.2228 S32: -0.0498 S33: -0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.6069 -23.8385 3.9661 REMARK 3 T TENSOR REMARK 3 T11: 0.1283 T22: 0.1308 REMARK 3 T33: 0.1592 T12: 0.0115 REMARK 3 T13: -0.0016 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.6806 L22: 2.3188 REMARK 3 L33: 1.1823 L12: -0.7415 REMARK 3 L13: 0.3762 L23: -0.3195 REMARK 3 S TENSOR REMARK 3 S11: 0.0212 S12: -0.0083 S13: 0.0135 REMARK 3 S21: -0.0938 S22: -0.0205 S23: 0.1608 REMARK 3 S31: -0.0438 S32: -0.0861 S33: -0.0045 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.7959 -26.1354 12.8754 REMARK 3 T TENSOR REMARK 3 T11: 0.1555 T22: 0.1480 REMARK 3 T33: 0.0944 T12: 0.0173 REMARK 3 T13: 0.0068 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 2.7205 L22: 3.1865 REMARK 3 L33: 1.7722 L12: -0.5772 REMARK 3 L13: -0.1643 L23: -0.6167 REMARK 3 S TENSOR REMARK 3 S11: -0.0297 S12: -0.2370 S13: 0.0630 REMARK 3 S21: 0.2097 S22: 0.0153 S23: -0.1403 REMARK 3 S31: -0.0331 S32: 0.1280 S33: 0.0244 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.2267 -7.3858 12.8713 REMARK 3 T TENSOR REMARK 3 T11: 0.2769 T22: 0.1894 REMARK 3 T33: 0.2666 T12: 0.0519 REMARK 3 T13: -0.0661 T23: -0.0673 REMARK 3 L TENSOR REMARK 3 L11: 2.7890 L22: 4.0652 REMARK 3 L33: 2.6091 L12: -3.3438 REMARK 3 L13: 0.1733 L23: 0.4772 REMARK 3 S TENSOR REMARK 3 S11: -0.4343 S12: -0.7278 S13: 0.5475 REMARK 3 S21: 0.5092 S22: 0.3909 S23: -0.4961 REMARK 3 S31: -0.0730 S32: 0.1234 S33: 0.0558 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.5199 -4.6858 -0.2573 REMARK 3 T TENSOR REMARK 3 T11: 0.2700 T22: 0.1651 REMARK 3 T33: 0.1879 T12: 0.0340 REMARK 3 T13: -0.0409 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 9.3431 L22: 8.4810 REMARK 3 L33: 2.2613 L12: 6.6356 REMARK 3 L13: -4.4681 L23: -3.1807 REMARK 3 S TENSOR REMARK 3 S11: -0.3353 S12: 0.4242 S13: 0.0378 REMARK 3 S21: -0.8101 S22: 0.0824 S23: 0.1860 REMARK 3 S31: -0.0336 S32: -0.0994 S33: 0.1433 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6723 -19.4296 13.1152 REMARK 3 T TENSOR REMARK 3 T11: 0.2379 T22: 0.2393 REMARK 3 T33: 0.2959 T12: -0.0282 REMARK 3 T13: -0.0547 T23: -0.0662 REMARK 3 L TENSOR REMARK 3 L11: 4.1128 L22: 5.0885 REMARK 3 L33: 0.3429 L12: -3.3694 REMARK 3 L13: -0.5783 L23: -0.3820 REMARK 3 S TENSOR REMARK 3 S11: -0.0374 S12: -0.1384 S13: 0.5119 REMARK 3 S21: 0.0797 S22: -0.2109 S23: -0.5308 REMARK 3 S31: -0.2850 S32: 0.1895 S33: 0.1610 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1424 -29.0824 7.0669 REMARK 3 T TENSOR REMARK 3 T11: 0.1029 T22: 0.1153 REMARK 3 T33: 0.1604 T12: 0.0197 REMARK 3 T13: 0.0039 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 4.3276 L22: 2.0799 REMARK 3 L33: 4.5270 L12: -0.3920 REMARK 3 L13: 1.4645 L23: 0.6613 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: -0.0240 S13: 0.0599 REMARK 3 S21: 0.0804 S22: 0.0282 S23: -0.2415 REMARK 3 S31: 0.0337 S32: 0.1809 S33: -0.0713 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8531 -38.7336 -7.4213 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.1926 REMARK 3 T33: 0.2547 T12: -0.0030 REMARK 3 T13: -0.0075 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.2670 L22: 2.0777 REMARK 3 L33: 3.6023 L12: -1.5467 REMARK 3 L13: -2.0335 L23: 2.8055 REMARK 3 S TENSOR REMARK 3 S11: 0.0627 S12: 0.1202 S13: -0.1657 REMARK 3 S21: -0.2659 S22: -0.2578 S23: 0.1371 REMARK 3 S31: -0.3529 S32: -0.7915 S33: 0.1759 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SS7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000260954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36774 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 46.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6PJ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 MG/ML OF LPXH, 0.27 MM JH-LPH-50, 10 REMARK 280 MM MES (PH 6.0), 100 MM NACL, 0.5 MM DTT, 2.5% GLYCEROL, 0.625% REMARK 280 DMSO, 0.05 M CALCIUM CHLORIDE DIHYDRATE, 0.05 M TRIS PH 6.5, 6.5 REMARK 280 % W/V PEG 2000 MME, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.70667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.85333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.85333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.70667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 413 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 607 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 640 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 159 REMARK 465 SER A 160 REMARK 465 LYS A 161 REMARK 465 ALA A 162 REMARK 465 ALA A 163 REMARK 465 ASN A 164 REMARK 465 SER A 165 REMARK 465 SER A 166 REMARK 465 LYS A 167 REMARK 465 SER A 168 REMARK 465 MET A 169 REMARK 465 GLU A 170 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 157 CG CD NE CZ NH1 NH2 REMARK 470 ALA A 158 CA C O CB REMARK 470 ILE A 171 CG1 CG2 CD1 REMARK 470 LEU A 245 CG CD1 CD2 REMARK 470 GLN A 248 CG CD OE1 NE2 REMARK 470 SER A 249 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 39 45.82 -92.31 REMARK 500 ASP A 122 76.23 -104.48 REMARK 500 HIS A 195 -47.85 72.86 REMARK 500 HIS A 220 -71.96 -100.93 REMARK 500 HIS A 220 -73.27 -100.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 HIS A 10 NE2 106.5 REMARK 620 3 ASP A 41 OD2 88.1 103.0 REMARK 620 4 HIS A 197 NE2 90.3 92.4 164.3 REMARK 620 5 BN8 A 303 O28 166.0 82.3 79.1 100.4 REMARK 620 6 BN8 A 303 O30 99.2 154.3 78.9 86.0 72.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 41 OD2 REMARK 620 2 ASN A 79 OD1 99.1 REMARK 620 3 HIS A 114 NE2 92.3 94.3 REMARK 620 4 HIS A 195 ND1 168.0 92.7 88.6 REMARK 620 5 BN8 A 303 N29 91.6 105.5 158.9 83.5 REMARK 620 6 BN8 A 303 O30 81.6 140.6 125.1 88.1 35.4 REMARK 620 N 1 2 3 4 5 DBREF1 7SS7 A 1 240 UNP A0A1S0WIC1_KLEPN DBREF2 7SS7 A A0A1S0WIC1 1 240 SEQADV 7SS7 LEU A 241 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 GLU A 242 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 GLU A 243 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 ASN A 244 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 LEU A 245 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 TYR A 246 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 PHE A 247 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 GLN A 248 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 SER A 249 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 HIS A 250 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 HIS A 251 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 HIS A 252 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 HIS A 253 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 HIS A 254 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 HIS A 255 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 HIS A 256 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 HIS A 257 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 HIS A 258 UNP A0A1S0WIC EXPRESSION TAG SEQADV 7SS7 HIS A 259 UNP A0A1S0WIC EXPRESSION TAG SEQRES 1 A 259 MET ALA THR LEU PHE ILE ALA ASP LEU HIS LEU GLN THR SEQRES 2 A 259 GLU GLU PRO ALA ILE THR ALA GLY PHE LEU ARG PHE LEU SEQRES 3 A 259 GLN GLY GLU ALA ARG GLN ALA ASP ALA LEU TYR ILE LEU SEQRES 4 A 259 GLY ASP LEU PHE GLU ALA TRP ILE GLY ASP ASP ASP PRO SEQRES 5 A 259 ASN PRO LEU HIS GLN GLN ILE ALA SER ALA ILE LYS ALA SEQRES 6 A 259 VAL VAL ASP ALA GLY VAL PRO CYS TYR PHE ILE HIS GLY SEQRES 7 A 259 ASN ARG ASP PHE LEU VAL GLY GLN ARG PHE ALA ARG GLN SEQRES 8 A 259 SER GLY MET ILE LEU LEU ALA GLU GLU GLU ARG LEU ASP SEQRES 9 A 259 LEU TYR GLY ARG GLU VAL LEU ILE MET HIS GLY ASP THR SEQRES 10 A 259 LEU CYS THR ASP ASP GLN GLY TYR LEU ALA PHE ARG ALA SEQRES 11 A 259 LYS VAL HIS THR PRO TRP ILE GLN ARG LEU PHE LEU ALA SEQRES 12 A 259 LEU PRO LEU PHE ILE ARG HIS ARG ILE ALA ALA ARG MET SEQRES 13 A 259 ARG ALA ASP SER LYS ALA ALA ASN SER SER LYS SER MET SEQRES 14 A 259 GLU ILE MET ASP VAL ASN PRO GLN ALA VAL VAL ASP ALA SEQRES 15 A 259 MET GLU ARG HIS HIS VAL GLN TRP LEU ILE HIS GLY HIS SEQRES 16 A 259 THR HIS ARG PRO ALA VAL HIS GLU LEU GLN ALA ASN GLY SEQRES 17 A 259 GLN PRO ALA TRP ARG VAL VAL LEU GLY ALA TRP HIS SER SEQRES 18 A 259 GLU GLY SER MET VAL LYS VAL THR PRO ASP ASP VAL GLU SEQRES 19 A 259 LEU ILE HIS PHE PRO PHE LEU GLU GLU ASN LEU TYR PHE SEQRES 20 A 259 GLN SER HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS HET MN A 301 1 HET MN A 302 1 HET BN8 A 303 39 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HETNAM MN MANGANESE (II) ION HETNAM BN8 6-{[(4-{4-[3-CHLORO-5-(TRIFLUOROMETHYL) HETNAM 2 BN8 PHENYL]PIPERAZINE-1-SULFONYL}PHENYL)CARBAMOYL]AMINO}- HETNAM 3 BN8 N-HYDROXYHEXANAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN 2(MN 2+) FORMUL 4 BN8 C24 H29 CL F3 N5 O5 S FORMUL 5 EDO 6(C2 H6 O2) FORMUL 11 HOH *242(H2 O) HELIX 1 AA1 GLU A 15 GLY A 28 1 14 HELIX 2 AA2 GLU A 29 ALA A 33 5 5 HELIX 3 AA3 ASN A 53 ALA A 69 1 17 HELIX 4 AA4 GLY A 85 GLY A 93 1 9 HELIX 5 AA5 GLY A 115 CYS A 119 5 5 HELIX 6 AA6 ASP A 122 HIS A 133 1 12 HELIX 7 AA7 THR A 134 LEU A 144 1 11 HELIX 8 AA8 PRO A 145 ARG A 157 1 13 HELIX 9 AA9 ASN A 175 HIS A 186 1 12 SHEET 1 AA1 6 ILE A 95 LEU A 96 0 SHEET 2 AA1 6 CYS A 73 PHE A 75 1 N PHE A 75 O ILE A 95 SHEET 3 AA1 6 ALA A 35 ILE A 38 1 N ILE A 38 O TYR A 74 SHEET 4 AA1 6 THR A 3 ILE A 6 1 N LEU A 4 O TYR A 37 SHEET 5 AA1 6 GLY A 223 VAL A 228 -1 O VAL A 228 N THR A 3 SHEET 6 AA1 6 VAL A 233 PHE A 238 -1 O PHE A 238 N GLY A 223 SHEET 1 AA2 5 GLU A 100 LEU A 105 0 SHEET 2 AA2 5 ARG A 108 MET A 113 -1 O ARG A 108 N LEU A 105 SHEET 3 AA2 5 TRP A 190 HIS A 193 1 O TRP A 190 N LEU A 111 SHEET 4 AA2 5 GLN A 209 VAL A 215 1 O VAL A 214 N LEU A 191 SHEET 5 AA2 5 ALA A 200 ALA A 206 -1 N LEU A 204 O ALA A 211 LINK OD1 ASP A 8 MN MN A 301 1555 1555 2.09 LINK NE2 HIS A 10 MN MN A 301 1555 1555 2.25 LINK OD2 ASP A 41 MN MN A 301 1555 1555 2.44 LINK OD2 ASP A 41 MN MN A 302 1555 1555 2.30 LINK OD1 ASN A 79 MN MN A 302 1555 1555 1.94 LINK NE2 HIS A 114 MN MN A 302 1555 1555 2.27 LINK ND1 HIS A 195 MN MN A 302 1555 1555 2.29 LINK NE2 HIS A 197 MN MN A 301 1555 1555 2.35 LINK MN MN A 301 O28 BN8 A 303 1555 1555 2.49 LINK MN MN A 301 O30 BN8 A 303 1555 1555 2.11 LINK MN MN A 302 N29 BN8 A 303 1555 1555 2.42 LINK MN MN A 302 O30 BN8 A 303 1555 1555 2.12 CRYST1 106.530 106.530 53.560 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009387 0.005420 0.000000 0.00000 SCALE2 0.000000 0.010839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018671 0.00000