HEADER SIGNALING PROTEIN 12-NOV-21 7STA TITLE X-RAY CRYSTAL STRUCTURE OF TRUNCATED HUMAN CHEMOKINE CCL19 (7-70) COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-C MOTIF CHEMOKINE 19; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: BETA-CHEMOKINE EXODUS-3,CK BETA-11,EPSTEIN-BARR VIRUS- COMPND 5 INDUCED MOLECULE 1 LIGAND CHEMOKINE,EBI1 LIGAND CHEMOKINE,ELC, COMPND 6 MACROPHAGE INFLAMMATORY PROTEIN 3 BETA,MIP-3-BETA,SMALL-INDUCIBLE COMPND 7 CYTOKINE A19; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CCL19, ELC, MIP3B, SCYA19; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CCL19, CHEMOKINE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.M.LEWANDOWSKI,K.KROECK,Y.CHEN REVDAT 4 18-OCT-23 7STA 1 REMARK REVDAT 3 09-MAR-22 7STA 1 JRNL REVDAT 2 02-MAR-22 7STA 1 JRNL REVDAT 1 23-FEB-22 7STA 0 JRNL AUTH E.M.LEWANDOWSKI,K.G.KROECK,L.M.C.JACOBS,T.G.FENSKE,R.N.WITT, JRNL AUTH 2 A.M.HINTZ,E.R.RAMSDEN,X.ZHANG,F.PETERSON,B.F.VOLKMAN, JRNL AUTH 3 C.T.VELDKAMP,Y.CHEN JRNL TITL STRUCTURAL INSIGHTS INTO MOLECULAR RECOGNITION BY HUMAN JRNL TITL 2 CHEMOKINE CCL19. JRNL REF BIOCHEMISTRY V. 61 311 2022 JRNL REFN ISSN 0006-2960 JRNL PMID 35156805 JRNL DOI 10.1021/ACS.BIOCHEM.1C00759 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 8065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 388 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 621 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2013 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : -1.52000 REMARK 3 B33 (A**2) : 1.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.337 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.328 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.091 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2119 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2069 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2895 ; 1.703 ; 1.670 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4765 ; 1.218 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 9.060 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;27.940 ;17.742 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 361 ;18.395 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;23.114 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2354 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 494 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 14.380 37.680 16.174 REMARK 3 T TENSOR REMARK 3 T11: 0.3678 T22: 0.1980 REMARK 3 T33: 0.0778 T12: -0.0083 REMARK 3 T13: -0.0267 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 7.3649 L22: 5.7520 REMARK 3 L33: 2.2426 L12: 1.4489 REMARK 3 L13: -0.7338 L23: 0.8383 REMARK 3 S TENSOR REMARK 3 S11: 0.2154 S12: 0.0051 S13: -0.1633 REMARK 3 S21: -0.1971 S22: -0.1320 S23: 0.4164 REMARK 3 S31: -0.5023 S32: 0.0318 S33: -0.0833 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 68 REMARK 3 ORIGIN FOR THE GROUP (A): 5.484 19.415 19.389 REMARK 3 T TENSOR REMARK 3 T11: 0.1107 T22: 0.1594 REMARK 3 T33: 0.9433 T12: -0.0095 REMARK 3 T13: -0.1602 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 5.3553 L22: 4.8215 REMARK 3 L33: 4.2839 L12: 4.3604 REMARK 3 L13: -2.1029 L23: -1.1305 REMARK 3 S TENSOR REMARK 3 S11: 0.1252 S12: 0.0596 S13: -0.7192 REMARK 3 S21: -0.0193 S22: -0.0830 S23: 0.1379 REMARK 3 S31: -0.4254 S32: -0.0151 S33: -0.0422 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 70 REMARK 3 ORIGIN FOR THE GROUP (A): 1.669 0.618 0.105 REMARK 3 T TENSOR REMARK 3 T11: 0.1575 T22: 0.2532 REMARK 3 T33: 0.4099 T12: 0.0389 REMARK 3 T13: -0.0121 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.0952 L22: 4.6639 REMARK 3 L33: 7.0506 L12: 0.3536 REMARK 3 L13: 0.2130 L23: -0.8762 REMARK 3 S TENSOR REMARK 3 S11: -0.1204 S12: -0.0090 S13: 0.4118 REMARK 3 S21: 0.3331 S22: -0.1272 S23: 0.1730 REMARK 3 S31: 0.1676 S32: -0.0383 S33: 0.2477 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 8 D 68 REMARK 3 ORIGIN FOR THE GROUP (A): 4.906 -17.584 9.011 REMARK 3 T TENSOR REMARK 3 T11: 0.9447 T22: 0.1413 REMARK 3 T33: 0.0901 T12: 0.0178 REMARK 3 T13: 0.1527 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 5.1901 L22: 3.8826 REMARK 3 L33: 5.4986 L12: -0.1243 REMARK 3 L13: 0.7344 L23: -3.8215 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: 0.0434 S13: 0.5388 REMARK 3 S21: 0.1092 S22: -0.1669 S23: -0.0613 REMARK 3 S31: 0.8498 S32: 0.0203 S33: 0.2276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7STA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000261015. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.02 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8480 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.29100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2MP1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M SODIUM NITRATE, REMARK 280 FINAL PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 74.09000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 7 REMARK 465 SER B 69 REMARK 465 ALA B 70 REMARK 465 ASP D 7 REMARK 465 SER D 69 REMARK 465 ALA D 70 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 7 CG OD1 OD2 REMARK 470 SER A 69 OG REMARK 470 ASP C 7 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PHE B 25 NH1 ARG C 45 1556 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 69 -114.76 -60.65 REMARK 500 SER B 11 31.27 -77.07 REMARK 500 SER D 11 54.71 -97.61 REMARK 500 REMARK 500 REMARK: NULL DBREF 7STA A 7 70 UNP Q99731 CCL19_HUMAN 28 91 DBREF 7STA B 7 70 UNP Q99731 CCL19_HUMAN 28 91 DBREF 7STA C 7 70 UNP Q99731 CCL19_HUMAN 28 91 DBREF 7STA D 7 70 UNP Q99731 CCL19_HUMAN 28 91 SEQRES 1 A 64 ASP CYS CYS LEU SER VAL THR GLN LYS PRO ILE PRO GLY SEQRES 2 A 64 TYR ILE VAL ARG ASN PHE HIS TYR LEU LEU ILE LYS ASP SEQRES 3 A 64 GLY CYS ARG VAL PRO ALA VAL VAL PHE THR THR LEU ARG SEQRES 4 A 64 GLY ARG GLN LEU CYS ALA PRO PRO ASP GLN PRO TRP VAL SEQRES 5 A 64 GLU ARG ILE ILE GLN ARG LEU GLN ARG THR SER ALA SEQRES 1 B 64 ASP CYS CYS LEU SER VAL THR GLN LYS PRO ILE PRO GLY SEQRES 2 B 64 TYR ILE VAL ARG ASN PHE HIS TYR LEU LEU ILE LYS ASP SEQRES 3 B 64 GLY CYS ARG VAL PRO ALA VAL VAL PHE THR THR LEU ARG SEQRES 4 B 64 GLY ARG GLN LEU CYS ALA PRO PRO ASP GLN PRO TRP VAL SEQRES 5 B 64 GLU ARG ILE ILE GLN ARG LEU GLN ARG THR SER ALA SEQRES 1 C 64 ASP CYS CYS LEU SER VAL THR GLN LYS PRO ILE PRO GLY SEQRES 2 C 64 TYR ILE VAL ARG ASN PHE HIS TYR LEU LEU ILE LYS ASP SEQRES 3 C 64 GLY CYS ARG VAL PRO ALA VAL VAL PHE THR THR LEU ARG SEQRES 4 C 64 GLY ARG GLN LEU CYS ALA PRO PRO ASP GLN PRO TRP VAL SEQRES 5 C 64 GLU ARG ILE ILE GLN ARG LEU GLN ARG THR SER ALA SEQRES 1 D 64 ASP CYS CYS LEU SER VAL THR GLN LYS PRO ILE PRO GLY SEQRES 2 D 64 TYR ILE VAL ARG ASN PHE HIS TYR LEU LEU ILE LYS ASP SEQRES 3 D 64 GLY CYS ARG VAL PRO ALA VAL VAL PHE THR THR LEU ARG SEQRES 4 D 64 GLY ARG GLN LEU CYS ALA PRO PRO ASP GLN PRO TRP VAL SEQRES 5 D 64 GLU ARG ILE ILE GLN ARG LEU GLN ARG THR SER ALA FORMUL 5 HOH *(H2 O) HELIX 1 AA1 PRO A 18 TYR A 20 5 3 HELIX 2 AA2 LEU A 29 GLY A 33 5 5 HELIX 3 AA3 GLN A 55 THR A 68 1 14 HELIX 4 AA4 PRO B 18 TYR B 20 5 3 HELIX 5 AA5 LEU B 29 GLY B 33 5 5 HELIX 6 AA6 GLN B 55 THR B 68 1 14 HELIX 7 AA7 PRO C 18 TYR C 20 5 3 HELIX 8 AA8 LEU C 29 GLY C 33 5 5 HELIX 9 AA9 GLN C 55 SER C 69 1 15 HELIX 10 AB1 PRO D 18 TYR D 20 5 3 HELIX 11 AB2 LEU D 29 GLY D 33 5 5 HELIX 12 AB3 GLN D 55 THR D 68 1 14 SHEET 1 AA1 3 VAL A 22 LEU A 28 0 SHEET 2 AA1 3 ALA A 38 THR A 43 -1 O ALA A 38 N LEU A 28 SHEET 3 AA1 3 GLN A 48 ALA A 51 -1 O LEU A 49 N PHE A 41 SHEET 1 AA2 3 VAL B 22 LEU B 28 0 SHEET 2 AA2 3 ALA B 38 THR B 43 -1 O VAL B 40 N HIS B 26 SHEET 3 AA2 3 GLN B 48 ALA B 51 -1 O LEU B 49 N PHE B 41 SHEET 1 AA3 3 VAL C 22 LEU C 28 0 SHEET 2 AA3 3 ALA C 38 THR C 43 -1 O ALA C 38 N LEU C 28 SHEET 3 AA3 3 GLN C 48 ALA C 51 -1 O LEU C 49 N PHE C 41 SHEET 1 AA4 3 VAL D 22 LEU D 28 0 SHEET 2 AA4 3 ALA D 38 THR D 43 -1 O VAL D 40 N HIS D 26 SHEET 3 AA4 3 GLN D 48 ALA D 51 -1 O LEU D 49 N PHE D 41 SSBOND 1 CYS A 8 CYS A 34 1555 1555 2.02 SSBOND 2 CYS A 9 CYS A 50 1555 1555 2.00 SSBOND 3 CYS B 8 CYS B 34 1555 1555 1.99 SSBOND 4 CYS B 9 CYS B 50 1555 1555 1.98 SSBOND 5 CYS C 8 CYS C 34 1555 1555 2.06 SSBOND 6 CYS C 9 CYS C 50 1555 1555 1.96 SSBOND 7 CYS D 8 CYS D 34 1555 1555 1.99 SSBOND 8 CYS D 9 CYS D 50 1555 1555 2.00 CRYST1 28.940 148.180 29.000 90.00 90.07 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034554 0.000000 0.000042 0.00000 SCALE2 0.000000 0.006749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.034483 0.00000