HEADER TRANSFERASE 15-NOV-21 7STX TITLE CRYO-EM STRUCTURE OF HUMAN NATB IN COMPLEX WITH COA-ALPHA-SYNUCLEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ALPHA-ACETYLTRANSFERASE 20; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METHIONINE N-ACETYLTRANSFERASE,N-ACETYLTRANSFERASE 5,N- COMPND 5 TERMINAL ACETYLTRANSFERASE B COMPLEX CATALYTIC SUBUNIT NAA20,N- COMPND 6 TERMINAL ACETYLTRANSFERASE B COMPLEX CATALYTIC SUBUNIT NAT5,NATB COMPND 7 COMPLEX SUBUNIT NAT5,NATB CATALYTIC SUBUNIT; COMPND 8 EC: 2.3.1.254; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: N-ALPHA-ACETYLTRANSFERASE 25, NATB AUXILIARY SUBUNIT; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY PROTEIN 20,N- COMPND 14 TERMINAL ACETYLTRANSFERASE B COMPLEX SUBUNIT MDM20,NATB COMPLEX COMPND 15 SUBUNIT MDM20,N-TERMINAL ACETYLTRANSFERASE B COMPLEX SUBUNIT NAA25, COMPND 16 P120; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 3; COMPND 19 MOLECULE: ALPHA-SYNUCLEIN; COMPND 20 CHAIN: C; COMPND 21 FRAGMENT: UNP RESIDUES 1-5; COMPND 22 SYNONYM: NON-A BETA COMPONENT OF AD AMYLOID,NON-A4 COMPONENT OF COMPND 23 AMYLOID PRECURSOR,NACP; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NAA20, NAT5; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN, HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: NAA25, C12ORF30, MDM20, NAP1; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 GENE: SNCA, NACP, PARK1; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NATB, NAA20, NAA25, TRANSFERASE, ALPHA SYNUCLEIN EXPDTA ELECTRON MICROSCOPY AUTHOR S.DENG,R.MARMORSTEIN REVDAT 3 25-DEC-24 7STX 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQADV SEQRES LINK ATOM REVDAT 2 05-JUL-23 7STX 1 JRNL REVDAT 1 22-DEC-21 7STX 0 JRNL AUTH S.DENG,R.MARMORSTEIN JRNL TITL CRYO-EM STRUCTURE OF HUMAN NATB IN COMPLEX WITH JRNL TITL 2 COA-ALPHA-SYNUCLEIN JRNL REF NOT PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CTFFIND, COOT, PHENIX, RELION, RELION, REMARK 3 RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.140 REMARK 3 NUMBER OF PARTICLES : 726923 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NOT SURE EXACTLY HOW MANY PARTICLES WERE USED REMARK 4 REMARK 4 7STX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000259732. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN NATB COMPLEX; N-ALPHA REMARK 245 -ACETYLTRANSFERASE 20, N-ALPHA- REMARK 245 ACETYLTRANSFERASE 25, NATB REMARK 245 AUXILIARY SUBUNIT; MDVFM PEPTIDE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 130.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 142 REMARK 465 GLU A 161 REMARK 465 LYS A 162 REMARK 465 LYS A 163 REMARK 465 SER A 164 REMARK 465 ILE A 165 REMARK 465 ILE A 166 REMARK 465 PRO A 167 REMARK 465 LEU A 168 REMARK 465 PRO A 169 REMARK 465 HIS A 170 REMARK 465 PRO A 171 REMARK 465 VAL A 172 REMARK 465 ARG A 173 REMARK 465 PRO A 174 REMARK 465 GLU A 175 REMARK 465 ASP A 176 REMARK 465 ILE A 177 REMARK 465 GLU A 178 REMARK 465 PRO B 706 REMARK 465 VAL B 707 REMARK 465 GLU B 708 REMARK 465 PRO B 709 REMARK 465 LYS B 710 REMARK 465 ASN B 711 REMARK 465 SER B 712 REMARK 465 GLU B 713 REMARK 465 LYS B 714 REMARK 465 THR B 715 REMARK 465 ALA B 716 REMARK 465 GLU B 717 REMARK 465 ASN B 718 REMARK 465 GLY B 719 REMARK 465 VAL B 720 REMARK 465 SER B 721 REMARK 465 SER B 722 REMARK 465 GLN B 870 REMARK 465 LYS B 871 REMARK 465 LYS B 872 REMARK 465 LYS B 873 REMARK 465 LYS B 874 REMARK 465 LYS B 875 REMARK 465 LYS B 876 REMARK 465 LYS B 877 REMARK 465 GLU B 878 REMARK 465 THR B 879 REMARK 465 SER B 880 REMARK 465 ALA B 917 REMARK 465 LEU B 918 REMARK 465 LYS B 919 REMARK 465 LEU B 920 REMARK 465 GLU B 921 REMARK 465 GLU B 922 REMARK 465 LEU B 923 REMARK 465 ILE B 924 REMARK 465 LEU B 925 REMARK 465 GLU B 926 REMARK 465 ASP B 927 REMARK 465 THR B 928 REMARK 465 SER B 929 REMARK 465 LEU B 930 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 9 SG REMARK 470 VAL B 49 CG1 CG2 REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 470 ASP B 79 CG OD1 OD2 REMARK 470 ASN B 80 CG OD1 ND2 REMARK 470 LEU B 82 CG CD1 CD2 REMARK 470 GLN B 83 CG CD OE1 NE2 REMARK 470 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 94 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 SER B 112 OG REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 SER B 117 OG REMARK 470 VAL B 126 CG1 CG2 REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 MET B 132 CG SD CE REMARK 470 GLU B 166 CG CD OE1 OE2 REMARK 470 ASN B 167 CG OD1 ND2 REMARK 470 LEU B 168 CG CD1 CD2 REMARK 470 CYS B 339 SG REMARK 470 ASN B 340 CG OD1 ND2 REMARK 470 LYS B 575 CG CD CE NZ REMARK 470 TYR B 893 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 909 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ACE C 0 N MET C 1 1.30 REMARK 500 CG2 ILE B 277 OG SER B 298 1.36 REMARK 500 CB ALA A 89 O5A COA A 201 1.38 REMARK 500 NH1 ARG A 84 CDP COA A 201 1.43 REMARK 500 C ACE C 0 S1P COA A 201 1.47 REMARK 500 OD1 ASN A 16 NE2 GLN B 538 1.67 REMARK 500 CH3 ACE C 0 S1P COA A 201 1.76 REMARK 500 CB HIS A 71 CE1 PHE A 107 2.07 REMARK 500 OD2 ASP B 533 NZ LYS B 535 2.08 REMARK 500 O ASN B 626 CG2 THR B 966 2.11 REMARK 500 CH3 ACE C 0 C2P COA A 201 2.12 REMARK 500 CG2 ILE B 277 CB SER B 298 2.18 REMARK 500 O ALA B 299 N ALA B 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ACE C 0 C MET C 1 N 0.220 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 107 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 VAL A 108 N - CA - C ANGL. DEV. = -20.0 DEGREES REMARK 500 LYS B 145 CB - CA - C ANGL. DEV. = -16.0 DEGREES REMARK 500 LYS B 145 N - CA - C ANGL. DEV. = -24.5 DEGREES REMARK 500 TYR B 297 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 LYS B 432 CB - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 GLN B 462 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 GLN B 462 N - CA - C ANGL. DEV. = -31.1 DEGREES REMARK 500 PHE B 463 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 ILE B 627 CB - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 ILE B 627 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 THR B 629 CB - CA - C ANGL. DEV. = 21.0 DEGREES REMARK 500 THR B 629 N - CA - C ANGL. DEV. = -20.8 DEGREES REMARK 500 LEU B 640 N - CA - C ANGL. DEV. = -30.0 DEGREES REMARK 500 PRO B 642 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 LYS B 667 CB - CA - C ANGL. DEV. = -23.6 DEGREES REMARK 500 ASP B 670 N - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 PRO B 701 N - CA - C ANGL. DEV. = -31.4 DEGREES REMARK 500 ACE C 0 O - C - N ANGL. DEV. = -68.2 DEGREES REMARK 500 MET C 1 C - N - CA ANGL. DEV. = 37.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 3 72.90 56.42 REMARK 500 PHE A 15 48.12 -93.46 REMARK 500 LEU A 20 49.32 -94.51 REMARK 500 TYR A 27 -9.74 66.29 REMARK 500 TYR A 42 45.24 -90.49 REMARK 500 PHE A 43 55.07 -140.89 REMARK 500 PHE A 106 78.44 64.07 REMARK 500 PHE A 107 -178.32 65.02 REMARK 500 ASP A 109 -165.92 -104.54 REMARK 500 LEU A 110 149.37 172.86 REMARK 500 SER A 115 -38.90 -135.99 REMARK 500 TYR A 131 -162.09 -113.73 REMARK 500 ALA A 140 -169.92 -161.11 REMARK 500 UNK B 24 -73.76 -81.73 REMARK 500 UNK B 25 -71.44 -128.75 REMARK 500 UNK B 26 -51.44 -132.04 REMARK 500 ARG B 57 36.64 -94.12 REMARK 500 GLU B 75 73.53 52.86 REMARK 500 THR B 77 43.96 38.60 REMARK 500 ASN B 146 50.23 -114.98 REMARK 500 LEU B 168 50.76 -91.41 REMARK 500 SER B 169 -24.97 -140.35 REMARK 500 SER B 260 24.02 49.86 REMARK 500 GLU B 288 -70.44 -79.99 REMARK 500 HIS B 289 -26.00 -141.77 REMARK 500 SER B 290 -162.13 -160.99 REMARK 500 GLU B 294 71.36 57.87 REMARK 500 TYR B 297 -71.61 -101.22 REMARK 500 ALA B 299 -130.72 44.84 REMARK 500 GLU B 300 -49.91 -27.99 REMARK 500 HIS B 319 70.93 57.53 REMARK 500 TYR B 343 -74.87 -96.11 REMARK 500 LYS B 344 17.61 -150.25 REMARK 500 PHE B 359 52.14 -98.29 REMARK 500 ALA B 378 -6.43 67.20 REMARK 500 GLU B 399 48.20 -98.63 REMARK 500 ASP B 407 -167.06 -121.59 REMARK 500 LYS B 432 18.38 45.05 REMARK 500 LYS B 458 -11.36 71.22 REMARK 500 GLU B 485 -5.73 68.84 REMARK 500 PRO B 503 36.76 -84.25 REMARK 500 LYS B 535 -167.65 -107.92 REMARK 500 ILE B 537 24.99 84.08 REMARK 500 PHE B 590 6.68 58.77 REMARK 500 ILE B 627 -65.45 -121.17 REMARK 500 SER B 628 60.41 -151.67 REMARK 500 THR B 629 154.27 173.79 REMARK 500 LEU B 631 -18.27 -49.06 REMARK 500 ASP B 646 51.83 -92.95 REMARK 500 TRP B 649 -10.20 66.54 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-25438 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN NATB IN COMPLEX WITH COA-ALPHA-SYNUCLEIN DBREF 7STX A 1 178 UNP P61599 NAA20_HUMAN 1 178 DBREF 7STX B 13 40 PDB 7STX 7STX 13 40 DBREF 7STX B 45 972 UNP Q14CX7 NAA25_HUMAN 45 972 DBREF 7STX C 1 5 UNP P37840 SYUA_HUMAN 1 5 SEQADV 7STX ACE C 0 UNP P37840 ACETYLATION SEQRES 1 A 178 MET THR THR LEU ARG ALA PHE THR CYS ASP ASP LEU PHE SEQRES 2 A 178 ARG PHE ASN ASN ILE ASN LEU ASP PRO LEU THR GLU THR SEQRES 3 A 178 TYR GLY ILE PRO PHE TYR LEU GLN TYR LEU ALA HIS TRP SEQRES 4 A 178 PRO GLU TYR PHE ILE VAL ALA GLU ALA PRO GLY GLY GLU SEQRES 5 A 178 LEU MET GLY TYR ILE MET GLY LYS ALA GLU GLY SER VAL SEQRES 6 A 178 ALA ARG GLU GLU TRP HIS GLY HIS VAL THR ALA LEU SER SEQRES 7 A 178 VAL ALA PRO GLU PHE ARG ARG LEU GLY LEU ALA ALA LYS SEQRES 8 A 178 LEU MET GLU LEU LEU GLU GLU ILE SER GLU ARG LYS GLY SEQRES 9 A 178 GLY PHE PHE VAL ASP LEU PHE VAL ARG VAL SER ASN GLN SEQRES 10 A 178 VAL ALA VAL ASN MET TYR LYS GLN LEU GLY TYR SER VAL SEQRES 11 A 178 TYR ARG THR VAL ILE GLU TYR TYR SER ALA SER ASN GLY SEQRES 12 A 178 GLU PRO ASP GLU ASP ALA TYR ASP MET ARG LYS ALA LEU SEQRES 13 A 178 SER ARG ASP THR GLU LYS LYS SER ILE ILE PRO LEU PRO SEQRES 14 A 178 HIS PRO VAL ARG PRO GLU ASP ILE GLU SEQRES 1 B 956 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 B 956 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 3 B 956 UNK UNK HIS CYS ALA LYS VAL LEU LYS ALA ILE GLY LEU SEQRES 4 B 956 GLN ARG THR GLY LYS GLN GLU GLU ALA PHE THR LEU ALA SEQRES 5 B 956 GLN GLU VAL ALA ALA LEU GLU PRO THR ASP ASP ASN SER SEQRES 6 B 956 LEU GLN ALA LEU THR ILE LEU TYR ARG GLU MET HIS ARG SEQRES 7 B 956 PRO GLU LEU VAL THR LYS LEU TYR GLU ALA ALA VAL LYS SEQRES 8 B 956 LYS VAL PRO ASN SER GLU GLU TYR HIS SER HIS LEU PHE SEQRES 9 B 956 MET ALA TYR ALA ARG VAL GLY GLU TYR LYS LYS MET GLN SEQRES 10 B 956 GLN ALA GLY MET ALA LEU TYR LYS ILE VAL PRO LYS ASN SEQRES 11 B 956 PRO TYR TYR PHE TRP SER VAL MET SER LEU ILE MET GLN SEQRES 12 B 956 SER ILE SER ALA GLN ASP GLU ASN LEU SER LYS THR MET SEQRES 13 B 956 PHE LEU PRO LEU ALA GLU ARG MET VAL GLU LYS MET VAL SEQRES 14 B 956 LYS GLU ASP LYS ILE GLU ALA GLU ALA GLU VAL GLU LEU SEQRES 15 B 956 TYR TYR MET ILE LEU GLU ARG LEU GLY LYS TYR GLN GLU SEQRES 16 B 956 ALA LEU ASP VAL ILE ARG GLY LYS LEU GLY GLU LYS LEU SEQRES 17 B 956 THR SER GLU ILE GLN SER ARG GLU ASN LYS CYS MET ALA SEQRES 18 B 956 MET TYR LYS LYS LEU SER ARG TRP PRO GLU CYS ASN ALA SEQRES 19 B 956 LEU SER ARG ARG LEU LEU LEU LYS ASN SER ASP ASP TRP SEQRES 20 B 956 GLN PHE TYR LEU THR TYR PHE ASP SER VAL PHE ARG LEU SEQRES 21 B 956 ILE GLU GLU ALA TRP SER PRO PRO ALA GLU GLY GLU HIS SEQRES 22 B 956 SER LEU GLU GLY GLU VAL HIS TYR SER ALA GLU LYS ALA SEQRES 23 B 956 VAL LYS PHE ILE GLU ASP ARG ILE THR GLU GLU SER LYS SEQRES 24 B 956 SER SER ARG HIS LEU ARG GLY PRO HIS LEU ALA LYS LEU SEQRES 25 B 956 GLU LEU ILE ARG ARG LEU ARG SER GLN GLY CYS ASN ASP SEQRES 26 B 956 GLU TYR LYS LEU GLY ASP PRO GLU GLU LEU MET PHE GLN SEQRES 27 B 956 TYR PHE LYS LYS PHE GLY ASP LYS PRO CYS CYS PHE THR SEQRES 28 B 956 ASP LEU LYS VAL PHE VAL ASP LEU LEU PRO ALA THR GLN SEQRES 29 B 956 CYS THR LYS PHE ILE ASN GLN LEU LEU GLY VAL VAL PRO SEQRES 30 B 956 LEU SER THR PRO THR GLU ASP LYS LEU ALA LEU PRO ALA SEQRES 31 B 956 ASP ILE ARG ALA LEU GLN GLN HIS LEU CYS VAL VAL GLN SEQRES 32 B 956 LEU THR ARG LEU LEU GLY LEU TYR HIS THR MET ASP LYS SEQRES 33 B 956 ASN GLN LYS LEU SER VAL VAL ARG GLU LEU MET LEU ARG SEQRES 34 B 956 TYR GLN HIS GLY LEU GLU PHE GLY LYS THR CYS LEU LYS SEQRES 35 B 956 THR GLU LEU GLN PHE SER ASP TYR TYR CYS LEU LEU ALA SEQRES 36 B 956 VAL HIS ALA LEU ILE ASP VAL TRP ARG GLU THR GLY ASP SEQRES 37 B 956 GLU THR THR VAL TRP GLN ALA LEU THR LEU LEU GLU GLU SEQRES 38 B 956 GLY LEU THR HIS SER PRO SER ASN ALA GLN PHE LYS LEU SEQRES 39 B 956 LEU LEU VAL ARG ILE TYR CYS MET LEU GLY ALA PHE GLU SEQRES 40 B 956 PRO VAL VAL ASP LEU TYR SER SER LEU ASP ALA LYS HIS SEQRES 41 B 956 ILE GLN HIS ASP THR ILE GLY TYR LEU LEU THR ARG TYR SEQRES 42 B 956 ALA GLU SER LEU GLY GLN TYR ALA ALA ALA SER GLN SER SEQRES 43 B 956 CYS ASN PHE ALA LEU ARG PHE PHE HIS SER ASN GLN LYS SEQRES 44 B 956 ASP THR SER GLU TYR ILE ILE GLN ALA TYR LYS TYR GLY SEQRES 45 B 956 ALA PHE GLU LYS ILE PRO GLU PHE ILE ALA PHE ARG ASN SEQRES 46 B 956 ARG LEU ASN ASN SER LEU HIS PHE ALA GLN VAL ARG THR SEQRES 47 B 956 GLU ARG MET LEU LEU ASP LEU LEU LEU GLU ALA ASN ILE SEQRES 48 B 956 SER THR SER LEU ALA GLU SER ILE LYS SER MET ASN LEU SEQRES 49 B 956 ARG PRO GLU GLU ASP ASP ILE PRO TRP GLU ASP LEU ARG SEQRES 50 B 956 ASP ASN ARG ASP LEU ASN VAL PHE PHE SER TRP ASP PRO SEQRES 51 B 956 LYS ASP ARG ASP VAL SER GLU GLU HIS LYS LYS LEU SER SEQRES 52 B 956 LEU GLU GLU GLU THR LEU TRP LEU ARG ILE ARG SER LEU SEQRES 53 B 956 THR LEU ARG LEU ILE SER GLY LEU PRO SER LEU ASN HIS SEQRES 54 B 956 PRO VAL GLU PRO LYS ASN SER GLU LYS THR ALA GLU ASN SEQRES 55 B 956 GLY VAL SER SER ARG ILE ASP ILE LEU ARG LEU LEU LEU SEQRES 56 B 956 GLN GLN LEU GLU ALA THR LEU GLU THR GLY LYS ARG PHE SEQRES 57 B 956 ILE GLU LYS ASP ILE GLN TYR PRO PHE LEU GLY PRO VAL SEQRES 58 B 956 PRO THR ARG MET GLY GLY PHE PHE ASN SER GLY CYS SER SEQRES 59 B 956 GLN CYS GLN ILE SER SER PHE TYR LEU VAL ASN ASP ILE SEQRES 60 B 956 TYR GLU LEU ASP THR SER GLY LEU GLU ASP THR MET GLU SEQRES 61 B 956 ILE GLN GLU ARG ILE GLU ASN SER PHE LYS SER LEU LEU SEQRES 62 B 956 ASP GLN LEU LYS ASP VAL PHE SER LYS CYS LYS GLY ASP SEQRES 63 B 956 LEU LEU GLU VAL LYS ASP GLY ASN LEU LYS THR HIS PRO SEQRES 64 B 956 THR LEU LEU GLU ASN LEU VAL PHE PHE VAL GLU THR ILE SEQRES 65 B 956 SER VAL ILE LEU TRP VAL SER SER TYR CYS GLU SER VAL SEQRES 66 B 956 LEU ARG PRO TYR LYS LEU ASN LEU GLN LYS LYS LYS LYS SEQRES 67 B 956 LYS LYS LYS GLU THR SER ILE ILE MET PRO PRO VAL PHE SEQRES 68 B 956 THR SER PHE GLN ASP TYR VAL THR GLY LEU GLN THR LEU SEQRES 69 B 956 ILE SER ASN VAL VAL ASP HIS ILE LYS GLY LEU GLU THR SEQRES 70 B 956 HIS LEU ILE ALA LEU LYS LEU GLU GLU LEU ILE LEU GLU SEQRES 71 B 956 ASP THR SER LEU SER PRO GLU GLU ARG LYS PHE SER LYS SEQRES 72 B 956 THR VAL GLN GLY LYS VAL GLN SER SER TYR LEU HIS SER SEQRES 73 B 956 LEU LEU GLU MET GLY GLU LEU LEU LYS LYS ARG LEU GLU SEQRES 74 B 956 THR THR LYS LYS LEU LYS ILE SEQRES 1 C 6 ACE MET ASP VAL PHE MET HET ACE C 0 3 HET COA A 201 48 HETNAM ACE ACETYL GROUP HETNAM COA COENZYME A FORMUL 3 ACE C2 H4 O FORMUL 4 COA C21 H36 N7 O16 P3 S HELIX 1 AA1 TYR A 27 HIS A 38 1 12 HELIX 2 AA2 GLY A 87 LYS A 103 1 17 HELIX 3 AA3 ASN A 116 GLY A 127 1 12 HELIX 4 AA4 UNK B 14 UNK B 21 1 8 HELIX 5 AA5 UNK B 22 UNK B 24 5 3 HELIX 6 AA6 UNK B 27 UNK B 35 1 9 HELIX 7 AA7 ALA B 47 GLY B 54 1 8 HELIX 8 AA8 GLN B 61 ALA B 72 1 12 HELIX 9 AA9 ASP B 78 MET B 92 1 15 HELIX 10 AB1 PRO B 95 GLU B 103 1 9 HELIX 11 AB2 GLU B 113 GLY B 127 1 15 HELIX 12 AB3 GLU B 128 VAL B 143 1 16 HELIX 13 AB4 PRO B 147 SER B 162 1 16 HELIX 14 AB5 PHE B 173 GLU B 187 1 15 HELIX 15 AB6 GLU B 193 LEU B 206 1 14 HELIX 16 AB7 LYS B 208 GLY B 218 1 11 HELIX 17 AB8 LYS B 219 LEU B 224 5 6 HELIX 18 AB9 ASN B 233 LEU B 242 1 10 HELIX 19 AC1 TRP B 245 SER B 260 1 16 HELIX 20 AC2 ASP B 262 GLU B 279 1 18 HELIX 21 AC3 ALA B 299 LYS B 315 1 17 HELIX 22 AC4 ARG B 321 SER B 336 1 16 HELIX 23 AC5 ASP B 347 PHE B 359 1 13 HELIX 24 AC6 CYS B 365 LYS B 370 1 6 HELIX 25 AC7 PHE B 372 LEU B 376 5 5 HELIX 26 AC8 LYS B 383 LEU B 389 1 7 HELIX 27 AC9 ILE B 408 LEU B 424 1 17 HELIX 28 AD1 ASN B 433 GLY B 449 1 17 HELIX 29 AD2 ASP B 465 LEU B 470 1 6 HELIX 30 AD3 LEU B 475 GLY B 483 1 9 HELIX 31 AD4 THR B 487 SER B 502 1 16 HELIX 32 AD5 ASN B 505 GLY B 520 1 16 HELIX 33 AD6 PHE B 522 SER B 530 1 9 HELIX 34 AD7 GLY B 543 GLU B 551 1 9 HELIX 35 AD8 GLN B 555 GLN B 583 1 29 HELIX 36 AD9 LYS B 592 ASN B 605 1 14 HELIX 37 AE1 SER B 606 GLU B 624 1 19 HELIX 38 AE2 SER B 630 LYS B 636 1 7 HELIX 39 AE3 SER B 672 SER B 698 1 27 HELIX 40 AE4 ILE B 724 ARG B 728 1 5 HELIX 41 AE5 ARG B 728 GLU B 746 1 19 HELIX 42 AE6 ARG B 760 SER B 767 1 8 HELIX 43 AE7 CYS B 769 GLY B 790 1 22 HELIX 44 AE8 THR B 794 LYS B 820 1 27 HELIX 45 AE9 VAL B 826 ASN B 830 5 5 HELIX 46 AF1 PRO B 835 ASN B 868 1 34 HELIX 47 AF2 MET B 883 VAL B 905 1 23 HELIX 48 AF3 HIS B 907 GLU B 912 1 6 HELIX 49 AF4 GLU B 933 LEU B 964 1 32 HELIX 50 AF5 GLU B 965 LYS B 969 5 5 SHEET 1 AA1 3 LEU A 4 ALA A 6 0 SHEET 2 AA1 3 ILE A 44 ALA A 48 -1 O VAL A 45 N ARG A 5 SHEET 3 AA1 3 GLY A 51 LEU A 53 -1 O GLY A 51 N ALA A 48 SHEET 1 AA2 3 PHE A 111 ARG A 113 0 SHEET 2 AA2 3 GLU A 147 ARG A 153 -1 O TYR A 150 N VAL A 112 SHEET 3 AA2 3 SER A 129 TYR A 138 -1 N TYR A 131 O ASP A 151 LINK C ACE C 0 N MET C 1 1555 1555 1.56 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 1273 THR A 160 TER 8520 ILE B 972 HETATM 8521 C ACE C 0 97.786 128.162 120.808 1.00 17.07 C HETATM 8522 O ACE C 0 98.077 129.229 120.399 1.00 17.07 O HETATM 8523 CH3 ACE C 0 97.422 128.002 122.274 1.00 17.07 C TER 8566 MET C 5 HETATM 8567 N1A COA A 201 89.975 115.946 128.042 1.00 19.91 N HETATM 8568 C2A COA A 201 89.130 116.848 128.609 1.00 19.91 C HETATM 8569 N3A COA A 201 89.639 117.936 129.251 1.00 19.91 N HETATM 8570 C4A COA A 201 90.983 118.119 129.325 1.00 19.91 C HETATM 8571 C5A COA A 201 91.806 117.241 128.771 1.00 19.91 C HETATM 8572 C6A COA A 201 91.281 116.126 128.113 1.00 19.91 C HETATM 8573 N6A COA A 201 91.937 115.053 127.446 1.00 19.91 N HETATM 8574 N7A COA A 201 93.062 117.657 128.983 1.00 19.91 N HETATM 8575 C8A COA A 201 92.998 118.793 129.675 1.00 19.91 C HETATM 8576 N9A COA A 201 91.722 119.085 129.886 1.00 19.91 N HETATM 8577 C1B COA A 201 91.153 120.202 130.582 1.00 19.91 C HETATM 8578 C2B COA A 201 90.833 119.840 131.810 1.00 19.91 C HETATM 8579 O2B COA A 201 89.444 120.101 132.053 1.00 19.91 O HETATM 8580 C3B COA A 201 91.683 120.708 132.758 1.00 19.91 C HETATM 8581 O3B COA A 201 90.959 121.110 133.805 1.00 19.91 O HETATM 8582 P3B COA A 201 91.223 120.299 135.265 1.00 19.91 P HETATM 8583 O7A COA A 201 91.614 118.871 134.963 1.00 19.91 O HETATM 8584 O8A COA A 201 89.941 120.322 136.123 1.00 19.91 O HETATM 8585 O9A COA A 201 92.333 120.978 136.025 1.00 19.91 O HETATM 8586 C4B COA A 201 92.103 121.930 131.877 1.00 19.91 C HETATM 8587 O4B COA A 201 92.247 121.420 130.692 1.00 19.91 O HETATM 8588 C5B COA A 201 93.436 122.485 132.335 1.00 19.91 C HETATM 8589 O5B COA A 201 94.034 121.601 133.241 1.00 19.91 O HETATM 8590 P1A COA A 201 95.627 121.272 133.025 1.00 19.91 P HETATM 8591 O1A COA A 201 96.407 122.438 133.519 1.00 19.91 O HETATM 8592 O2A COA A 201 96.013 120.052 133.776 1.00 19.91 O HETATM 8593 O3A COA A 201 95.931 121.060 131.429 1.00 19.91 O HETATM 8594 P2A COA A 201 97.491 120.870 130.841 1.00 19.91 P HETATM 8595 O4A COA A 201 98.273 120.072 131.844 1.00 19.91 O HETATM 8596 O5A COA A 201 98.127 122.225 130.584 1.00 19.91 O HETATM 8597 O6A COA A 201 97.402 120.005 129.457 1.00 19.91 O HETATM 8598 CBP COA A 201 96.989 120.184 127.110 1.00 19.91 C HETATM 8599 CCP COA A 201 97.822 120.658 128.282 1.00 19.91 C HETATM 8600 CDP COA A 201 97.579 118.948 126.526 1.00 19.91 C HETATM 8601 CEP COA A 201 95.604 119.891 127.593 1.00 19.91 C HETATM 8602 CAP COA A 201 96.903 121.285 126.058 1.00 19.91 C HETATM 8603 OAP COA A 201 96.917 122.478 126.708 1.00 19.91 O HETATM 8604 C9P COA A 201 98.128 121.250 125.123 1.00 19.91 C HETATM 8605 O9P COA A 201 99.171 121.705 125.511 1.00 19.91 O HETATM 8606 N8P COA A 201 98.054 120.672 123.731 1.00 19.91 N HETATM 8607 C7P COA A 201 99.303 120.716 122.881 1.00 19.91 C HETATM 8608 C6P COA A 201 99.225 122.063 122.154 1.00 19.91 C HETATM 8609 C5P COA A 201 97.736 122.330 121.915 1.00 19.91 C HETATM 8610 O5P COA A 201 97.037 121.395 121.717 1.00 19.91 O HETATM 8611 N4P COA A 201 97.149 123.611 121.931 1.00 19.91 N HETATM 8612 C3P COA A 201 97.905 124.816 122.170 1.00 19.91 C HETATM 8613 C2P COA A 201 96.872 125.958 122.400 1.00 19.91 C HETATM 8614 S1P COA A 201 96.850 127.034 120.915 1.00 19.91 S CONECT 8521 8522 8523 8524 CONECT 8522 8521 CONECT 8523 8521 CONECT 8524 8521 CONECT 8567 8568 8572 CONECT 8568 8567 8569 CONECT 8569 8568 8570 CONECT 8570 8569 8571 8576 CONECT 8571 8570 8572 8574 CONECT 8572 8567 8571 8573 CONECT 8573 8572 CONECT 8574 8571 8575 CONECT 8575 8574 8576 CONECT 8576 8570 8575 8577 CONECT 8577 8576 8578 8587 CONECT 8578 8577 8579 8580 CONECT 8579 8578 CONECT 8580 8578 8581 8586 CONECT 8581 8580 8582 CONECT 8582 8581 8583 8584 8585 CONECT 8583 8582 CONECT 8584 8582 CONECT 8585 8582 CONECT 8586 8580 8587 8588 CONECT 8587 8577 8586 CONECT 8588 8586 8589 CONECT 8589 8588 8590 CONECT 8590 8589 8591 8592 8593 CONECT 8591 8590 CONECT 8592 8590 CONECT 8593 8590 8594 CONECT 8594 8593 8595 8596 8597 CONECT 8595 8594 CONECT 8596 8594 CONECT 8597 8594 8599 CONECT 8598 8599 8600 8601 8602 CONECT 8599 8597 8598 CONECT 8600 8598 CONECT 8601 8598 CONECT 8602 8598 8603 8604 CONECT 8603 8602 CONECT 8604 8602 8605 8606 CONECT 8605 8604 CONECT 8606 8604 8607 CONECT 8607 8606 8608 CONECT 8608 8607 8609 CONECT 8609 8608 8610 8611 CONECT 8610 8609 CONECT 8611 8609 8612 CONECT 8612 8611 8613 CONECT 8613 8612 8614 CONECT 8614 8613 MASTER 353 0 2 50 6 0 0 6 8611 3 52 89 END