HEADER LIGASE/DNA 17-NOV-21 7SUM TITLE CRYSTAL STRUCTURE OF HUMAN LIGASE I WITH NICK DUPLEXES CONTAINING TITLE 2 COGNATE A:T COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 261-918; COMPND 5 SYNONYM: DNA LIGASE I,POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP] 1; COMPND 6 EC: 6.5.1.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA(5'-*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*A-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA(5'-P*GP*TP*CP*GP*GP*AP*C-3'); COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: DNA(5'- COMPND 18 *GP*TP*CP*CP*GP*AP*CP*TP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C-3'); COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LIG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630 KEYWDS LIGASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.TANG,M.GULKIS,R.MCKENNA,M.CAGLAYAN REVDAT 4 18-OCT-23 7SUM 1 REMARK REVDAT 3 21-SEP-22 7SUM 1 REMARK REVDAT 2 20-JUL-22 7SUM 1 JRNL REVDAT 1 13-JUL-22 7SUM 0 JRNL AUTH Q.TANG,M.GULKIS,R.MCKENNA,M.CAGLAYAN JRNL TITL STRUCTURES OF LIG1 THAT ENGAGE WITH MUTAGENIC MISMATCHES JRNL TITL 2 INSERTED BY POL BETA IN BASE EXCISION REPAIR. JRNL REF NAT COMMUN V. 13 3860 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35790757 JRNL DOI 10.1038/S41467-022-31585-W REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 21183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.340 REMARK 3 FREE R VALUE TEST SET COUNT : 1132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9300 - 5.7600 1.00 2695 148 0.1592 0.1943 REMARK 3 2 5.7600 - 4.5900 1.00 2604 126 0.1527 0.2034 REMARK 3 3 4.5900 - 4.0100 1.00 2524 176 0.1513 0.1886 REMARK 3 4 4.0100 - 3.6500 1.00 2540 132 0.1842 0.2473 REMARK 3 5 3.6500 - 3.3900 1.00 2546 123 0.1910 0.2253 REMARK 3 6 3.3900 - 3.1900 0.99 2474 156 0.2143 0.3048 REMARK 3 7 3.1900 - 3.0300 0.97 2436 151 0.2593 0.3055 REMARK 3 8 3.0300 - 2.9000 0.89 2232 120 0.2796 0.2932 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000260251. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : 7B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21707 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6P0D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, PH 6.6, 100 MM LITHIUM REMARK 280 ACETATE, 20% W/V PEG3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.62750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.07800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.29450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.07800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.62750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.29450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 261 REMARK 465 GLN A 907 REMARK 465 GLY A 908 REMARK 465 GLU A 909 REMARK 465 ASP A 910 REMARK 465 SER A 911 REMARK 465 GLY A 912 REMARK 465 SER A 913 REMARK 465 ASP A 914 REMARK 465 PRO A 915 REMARK 465 GLU A 916 REMARK 465 ASP A 917 REMARK 465 THR A 918 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 GLU A 367 CG CD OE1 OE2 REMARK 470 ARG A 387 CG CD NE CZ NH1 NH2 REMARK 470 THR A 389 OG1 CG2 REMARK 470 GLN A 390 CG CD OE1 NE2 REMARK 470 ARG A 391 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 475 CG CD OE1 OE2 REMARK 470 GLU A 526 CG CD OE1 OE2 REMARK 470 ARG A 527 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 533 CG CD CE NZ REMARK 470 ARG A 549 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 556 CG CD CE NZ REMARK 470 ARG A 557 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 650 CG CD OE1 OE2 REMARK 470 GLU A 668 CG CD OE1 OE2 REMARK 470 GLU A 788 CG CD OE1 OE2 REMARK 470 GLN A 906 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP3 DG C 1 P AMP A 1001 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA B 7 O3' DT B 8 P -0.084 REMARK 500 DG B 9 O3' DC B 10 P -0.077 REMARK 500 DC B 10 O3' DG B 11 P -0.108 REMARK 500 DG C 1 P DG C 1 OP3 -0.214 REMARK 500 DG C 4 O3' DG C 5 P -0.098 REMARK 500 DA C 6 O3' DC C 7 P -0.089 REMARK 500 DT D 10 O3' DC D 11 P -0.101 REMARK 500 DC D 11 O3' DC D 11 C3' -0.038 REMARK 500 DC D 12 O3' DG D 13 P -0.093 REMARK 500 DG D 13 O3' DA D 14 P -0.089 REMARK 500 DA D 14 O3' DC D 15 P -0.076 REMARK 500 DC D 15 O3' DT D 16 P -0.080 REMARK 500 DT D 16 O3' DA D 17 P -0.081 REMARK 500 DA D 17 O3' DC D 18 P -0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 272 71.25 51.71 REMARK 500 ASP A 378 118.36 -165.04 REMARK 500 ASN A 385 50.60 -93.79 REMARK 500 THR A 389 -7.20 70.16 REMARK 500 ARG A 391 -77.22 -119.79 REMARK 500 HIS A 436 -113.32 68.44 REMARK 500 ALA A 455 -131.41 -135.24 REMARK 500 ALA A 483 11.59 -69.80 REMARK 500 GLU A 559 -130.41 52.65 REMARK 500 TYR A 567 120.33 -36.71 REMARK 500 ASP A 570 79.41 -104.87 REMARK 500 SER A 615 141.00 -170.62 REMARK 500 LYS A 630 67.15 61.00 REMARK 500 ARG A 643 -146.77 -98.75 REMARK 500 LYS A 644 -117.19 65.81 REMARK 500 PHE A 660 3.76 -150.12 REMARK 500 GLU A 692 -49.64 -141.05 REMARK 500 ASP A 728 -31.76 -138.11 REMARK 500 THR A 732 -155.02 -87.44 REMARK 500 HIS A 740 56.26 -94.68 REMARK 500 ASP A 748 2.32 -69.37 REMARK 500 ASP A 751 128.27 -37.83 REMARK 500 ASP A 755 105.11 -57.93 REMARK 500 ARG A 774 -153.89 -110.61 REMARK 500 CYS A 794 161.52 172.67 REMARK 500 ASP A 827 -119.79 43.09 REMARK 500 SER A 839 -41.99 -136.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 AMP A 1001 DBREF 7SUM A 261 918 UNP P18858 DNLI1_HUMAN 261 918 DBREF 7SUM B 3 13 PDB 7SUM 7SUM 3 13 DBREF 7SUM C 1 7 PDB 7SUM 7SUM 1 7 DBREF 7SUM D 9 26 PDB 7SUM 7SUM 9 26 SEQADV 7SUM ALA A 346 UNP P18858 GLU 346 CONFLICT SEQADV 7SUM ALA A 592 UNP P18858 GLU 592 CONFLICT SEQRES 1 A 658 LEU ASP PRO SER GLY TYR ASN PRO ALA LYS ASN ASN TYR SEQRES 2 A 658 HIS PRO VAL GLU ASP ALA CYS TRP LYS PRO GLY GLN LYS SEQRES 3 A 658 VAL PRO TYR LEU ALA VAL ALA ARG THR PHE GLU LYS ILE SEQRES 4 A 658 GLU GLU VAL SER ALA ARG LEU ARG MET VAL GLU THR LEU SEQRES 5 A 658 SER ASN LEU LEU ARG SER VAL VAL ALA LEU SER PRO PRO SEQRES 6 A 658 ASP LEU LEU PRO VAL LEU TYR LEU SER LEU ASN HIS LEU SEQRES 7 A 658 GLY PRO PRO GLN GLN GLY LEU ALA LEU GLY VAL GLY ASP SEQRES 8 A 658 GLY VAL LEU LEU LYS ALA VAL ALA GLN ALA THR GLY ARG SEQRES 9 A 658 GLN LEU GLU SER VAL ARG ALA GLU ALA ALA GLU LYS GLY SEQRES 10 A 658 ASP VAL GLY LEU VAL ALA GLU ASN SER ARG SER THR GLN SEQRES 11 A 658 ARG LEU MET LEU PRO PRO PRO PRO LEU THR ALA SER GLY SEQRES 12 A 658 VAL PHE SER LYS PHE ARG ASP ILE ALA ARG LEU THR GLY SEQRES 13 A 658 SER ALA SER THR ALA LYS LYS ILE ASP ILE ILE LYS GLY SEQRES 14 A 658 LEU PHE VAL ALA CYS ARG HIS SER GLU ALA ARG PHE ILE SEQRES 15 A 658 ALA ARG SER LEU SER GLY ARG LEU ARG LEU GLY LEU ALA SEQRES 16 A 658 GLU GLN SER VAL LEU ALA ALA LEU SER GLN ALA VAL SER SEQRES 17 A 658 LEU THR PRO PRO GLY GLN GLU PHE PRO PRO ALA MET VAL SEQRES 18 A 658 ASP ALA GLY LYS GLY LYS THR ALA GLU ALA ARG LYS THR SEQRES 19 A 658 TRP LEU GLU GLU GLN GLY MET ILE LEU LYS GLN THR PHE SEQRES 20 A 658 CYS GLU VAL PRO ASP LEU ASP ARG ILE ILE PRO VAL LEU SEQRES 21 A 658 LEU GLU HIS GLY LEU GLU ARG LEU PRO GLU HIS CYS LYS SEQRES 22 A 658 LEU SER PRO GLY ILE PRO LEU LYS PRO MET LEU ALA HIS SEQRES 23 A 658 PRO THR ARG GLY ILE SER GLU VAL LEU LYS ARG PHE GLU SEQRES 24 A 658 GLU ALA ALA PHE THR CYS GLU TYR LYS TYR ASP GLY GLN SEQRES 25 A 658 ARG ALA GLN ILE HIS ALA LEU GLU GLY GLY GLU VAL LYS SEQRES 26 A 658 ILE PHE SER ARG ASN GLN ALA ASP ASN THR GLY LYS TYR SEQRES 27 A 658 PRO ASP ILE ILE SER ARG ILE PRO LYS ILE LYS LEU PRO SEQRES 28 A 658 SER VAL THR SER PHE ILE LEU ASP THR GLU ALA VAL ALA SEQRES 29 A 658 TRP ASP ARG GLU LYS LYS GLN ILE GLN PRO PHE GLN VAL SEQRES 30 A 658 LEU THR THR ARG LYS ARG LYS GLU VAL ASP ALA SER GLU SEQRES 31 A 658 ILE GLN VAL GLN VAL CYS LEU TYR ALA PHE ASP LEU ILE SEQRES 32 A 658 TYR LEU ASN GLY GLU SER LEU VAL ARG GLU PRO LEU SER SEQRES 33 A 658 ARG ARG ARG GLN LEU LEU ARG GLU ASN PHE VAL GLU THR SEQRES 34 A 658 GLU GLY GLU PHE VAL PHE ALA THR SER LEU ASP THR LYS SEQRES 35 A 658 ASP ILE GLU GLN ILE ALA GLU PHE LEU GLU GLN SER VAL SEQRES 36 A 658 LYS ASP SER CYS GLU GLY LEU MET VAL LYS THR LEU ASP SEQRES 37 A 658 VAL ASP ALA THR TYR GLU ILE ALA LYS ARG SER HIS ASN SEQRES 38 A 658 TRP LEU LYS LEU LYS LYS ASP TYR LEU ASP GLY VAL GLY SEQRES 39 A 658 ASP THR LEU ASP LEU VAL VAL ILE GLY ALA TYR LEU GLY SEQRES 40 A 658 ARG GLY LYS ARG ALA GLY ARG TYR GLY GLY PHE LEU LEU SEQRES 41 A 658 ALA SER TYR ASP GLU ASP SER GLU GLU LEU GLN ALA ILE SEQRES 42 A 658 CYS LYS LEU GLY THR GLY PHE SER ASP GLU GLU LEU GLU SEQRES 43 A 658 GLU HIS HIS GLN SER LEU LYS ALA LEU VAL LEU PRO SER SEQRES 44 A 658 PRO ARG PRO TYR VAL ARG ILE ASP GLY ALA VAL ILE PRO SEQRES 45 A 658 ASP HIS TRP LEU ASP PRO SER ALA VAL TRP GLU VAL LYS SEQRES 46 A 658 CYS ALA ASP LEU SER LEU SER PRO ILE TYR PRO ALA ALA SEQRES 47 A 658 ARG GLY LEU VAL ASP SER ASP LYS GLY ILE SER LEU ARG SEQRES 48 A 658 PHE PRO ARG PHE ILE ARG VAL ARG GLU ASP LYS GLN PRO SEQRES 49 A 658 GLU GLN ALA THR THR SER ALA GLN VAL ALA CYS LEU TYR SEQRES 50 A 658 ARG LYS GLN SER GLN ILE GLN ASN GLN GLN GLY GLU ASP SEQRES 51 A 658 SER GLY SER ASP PRO GLU ASP THR SEQRES 1 B 11 DG DC DT DG DA DT DG DC DG DT DA SEQRES 1 C 7 DG DT DC DG DG DA DC SEQRES 1 D 18 DG DT DC DC DG DA DC DT DA DC DG DC DA SEQRES 2 D 18 DT DC DA DG DC HET AMP A1001 22 HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 5 AMP C10 H14 N5 O7 P FORMUL 6 HOH *140(H2 O) HELIX 1 AA1 ASP A 262 TYR A 266 5 5 HELIX 2 AA2 HIS A 274 ALA A 279 1 6 HELIX 3 AA3 PRO A 288 VAL A 302 1 15 HELIX 4 AA4 ALA A 304 SER A 323 1 20 HELIX 5 AA5 ASP A 326 ASN A 336 1 11 HELIX 6 AA6 PRO A 340 GLY A 344 5 5 HELIX 7 AA7 GLY A 350 GLY A 363 1 14 HELIX 8 AA8 GLN A 365 GLY A 377 1 13 HELIX 9 AA9 ASP A 378 ASN A 385 1 8 HELIX 10 AB1 THR A 400 LEU A 414 1 15 HELIX 11 AB2 ALA A 418 CYS A 434 1 17 HELIX 12 AB3 SER A 437 SER A 447 1 11 HELIX 13 AB4 ALA A 455 THR A 470 1 16 HELIX 14 AB5 THR A 488 VAL A 510 1 23 HELIX 15 AB6 ASP A 512 GLY A 524 1 13 HELIX 16 AB7 ARG A 527 CYS A 532 1 6 HELIX 17 AB8 GLY A 550 GLU A 559 1 10 HELIX 18 AB9 TYR A 598 ARG A 604 1 7 HELIX 19 AC1 ILE A 605 LYS A 609 5 5 HELIX 20 AC2 PRO A 634 THR A 639 1 6 HELIX 21 AC3 PRO A 674 PHE A 686 1 13 HELIX 22 AC4 ASP A 703 ASP A 717 1 15 HELIX 23 AC5 ASP A 748 LEU A 750 5 3 HELIX 24 AC6 ARG A 768 ALA A 772 5 5 HELIX 25 AC7 SER A 801 ALA A 814 1 14 HELIX 26 AC8 GLN A 883 ALA A 887 5 5 HELIX 27 AC9 THR A 889 LYS A 899 1 11 HELIX 28 AD1 GLN A 900 ASN A 905 1 6 SHEET 1 AA1 5 ALA A 545 PRO A 547 0 SHEET 2 AA1 5 TRP A 742 LYS A 746 1 O TRP A 742 N HIS A 546 SHEET 3 AA1 5 GLY A 721 THR A 726 -1 N LEU A 722 O LEU A 745 SHEET 4 AA1 5 PHE A 563 TYR A 567 -1 N GLU A 566 O MET A 723 SHEET 5 AA1 5 SER A 698 ASP A 700 -1 O LEU A 699 N CYS A 565 SHEET 1 AA2 5 VAL A 584 PHE A 587 0 SHEET 2 AA2 5 GLN A 572 ALA A 578 -1 N HIS A 577 O LYS A 585 SHEET 3 AA2 5 PHE A 616 ASP A 626 -1 O PHE A 616 N ALA A 578 SHEET 4 AA2 5 GLN A 654 LEU A 665 -1 O CYS A 656 N VAL A 623 SHEET 5 AA2 5 GLU A 668 SER A 669 -1 O GLU A 668 N LEU A 665 SHEET 1 AA3 4 GLN A 631 ILE A 632 0 SHEET 2 AA3 4 PHE A 616 ASP A 626 -1 N ASP A 626 O GLN A 631 SHEET 3 AA3 4 GLN A 654 LEU A 665 -1 O CYS A 656 N VAL A 623 SHEET 4 AA3 4 PHE A 693 PHE A 695 1 O VAL A 694 N LEU A 657 SHEET 1 AA4 6 VAL A 816 LEU A 817 0 SHEET 2 AA4 6 HIS A 834 LEU A 836 -1 O TRP A 835 N LEU A 817 SHEET 3 AA4 6 THR A 756 LEU A 766 -1 N ALA A 764 O HIS A 834 SHEET 4 AA4 6 TYR A 775 ASP A 784 -1 O GLY A 777 N TYR A 765 SHEET 5 AA4 6 GLU A 789 LEU A 796 -1 O ILE A 793 N LEU A 780 SHEET 6 AA4 6 VAL A 824 ARG A 825 1 O ARG A 825 N ALA A 792 SHEET 1 AA5 5 VAL A 816 LEU A 817 0 SHEET 2 AA5 5 HIS A 834 LEU A 836 -1 O TRP A 835 N LEU A 817 SHEET 3 AA5 5 THR A 756 LEU A 766 -1 N ALA A 764 O HIS A 834 SHEET 4 AA5 5 VAL A 841 LYS A 845 -1 O VAL A 844 N LEU A 757 SHEET 5 AA5 5 ARG A 874 VAL A 878 -1 O ARG A 877 N GLU A 843 SHEET 1 AA6 2 ASP A 848 SER A 852 0 SHEET 2 AA6 2 GLY A 867 ARG A 871 -1 O GLY A 867 N SER A 852 CISPEP 1 PHE A 476 PRO A 477 0 -9.77 CRYST1 65.255 116.589 124.156 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015324 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008054 0.00000