HEADER IMMUNOSUPPRESSANT 22-NOV-21 7SXB TITLE NMR SOLUTION STRUCTURE FOR DOMAIN 3 OF HELIGMOSOMOIDES POLYGYRUS TITLE 2 PROTEIN TRANSFORMING GROWTH FACTOR BETA MIMIC 1 (TGM-1 D3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFORMING GROWTH FACTOR MIMIC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELIGMOSOMOIDES POLYGYRUS; SOURCE 3 ORGANISM_COMMON: PARASITIC NEMATODE; SOURCE 4 ORGANISM_TAXID: 6339; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET32B KEYWDS CCP DOMAIN, TGF-BETA, TBRII-BINDING DOMAIN, IMMUNOSUPPRESSANT EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.MUKUNDAN,C.BYEON,A.P.HINCK REVDAT 3 14-JUN-23 7SXB 1 REMARK REVDAT 2 15-JUN-22 7SXB 1 JRNL REVDAT 1 18-MAY-22 7SXB 0 JRNL AUTH A.MUKUNDAN,C.H.BYEON,C.S.HINCK,K.CUNNINGHAM,T.CAMPION, JRNL AUTH 2 D.J.SMYTH,R.M.MAIZELS,A.P.HINCK JRNL TITL CONVERGENT EVOLUTION OF A PARASITE-ENCODED COMPLEMENT JRNL TITL 2 CONTROL PROTEIN-SCAFFOLD TO MIMIC BINDING OF MAMMALIAN JRNL TITL 3 TGF-BETA TO ITS RECEPTORS, T BETA RI AND T BETA RII. JRNL REF J.BIOL.CHEM. V. 298 01994 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35500648 JRNL DOI 10.1016/J.JBC.2022.101994 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000259961. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310; 310 REMARK 210 PH : 6.0; 6.0 REMARK 210 IONIC STRENGTH : 25MM NA2HPO4, 50MM NACL; 25MM REMARK 210 NA2HPO4, 50MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 250 UM [U-100% 13C; U-100% 15N] REMARK 210 TGM-1 D3, 95% H2O/5% D2O; 250 UM REMARK 210 [U-100% 13C; U-100% 15N] TGM-1 REMARK 210 D3, 10MG/ML PF1 PHAGE, 95% H2O/5% REMARK 210 D2O; 250 UM [U-100% 13C; U-100% REMARK 210 15N; U-80% 2H] TGM-1 D3, 95% H2O/ REMARK 210 5% D2O; 250 UM [U-100% 15N; U-80% REMARK 210 2H] TGM-1 D3, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNHB; 3D HCCH REMARK 210 -TOCSY; 2D 1H-13C HSQC; 3D HN(CO) REMARK 210 CA; 3D HBHA(CO)NH; 3D HNCO; 3D REMARK 210 HN(CA)CO; 2D CB(CGCDCD)HD; 1H REMARK 210 13C HSQC-TOCSY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-15N NOESY; 2D REMARK 210 CB(CGCDCD)HE; 3D HNCACB; 3D REMARK 210 H(CCO)NH; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D C(CO)NH; 3D HCA(CO) REMARK 210 N; 3D CBCA(CO)NH; 2D 1H-15N HSQC REMARK 210 IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, CCPNMR ANALYSIS, REMARK 210 NMRFAM-SPARKY, I-PINE, NMRPIPE, REMARK 210 TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 5 PRO A 44 CA - C - N ANGL. DEV. = -14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 4 -99.69 39.15 REMARK 500 1 LEU A 9 99.06 74.99 REMARK 500 1 HIS A 27 5.07 55.39 REMARK 500 1 LYS A 35 158.91 105.33 REMARK 500 1 ASP A 36 -165.16 -120.56 REMARK 500 2 THR A 4 -157.26 -102.18 REMARK 500 2 PRO A 7 -179.22 -54.74 REMARK 500 2 LEU A 9 -54.66 98.82 REMARK 500 2 ASP A 11 56.83 160.71 REMARK 500 2 ILE A 14 -43.83 -142.31 REMARK 500 2 ASP A 25 100.99 40.35 REMARK 500 2 ARG A 26 47.54 -179.99 REMARK 500 2 LYS A 35 134.82 154.49 REMARK 500 2 ILE A 84 79.94 -150.51 REMARK 500 3 SER A 2 116.30 63.48 REMARK 500 3 THR A 4 30.26 39.78 REMARK 500 3 PRO A 8 2.50 -68.67 REMARK 500 3 LEU A 9 108.95 70.00 REMARK 500 3 ILE A 14 -39.93 -134.46 REMARK 500 3 ASP A 25 -153.73 108.18 REMARK 500 3 ARG A 26 68.88 21.00 REMARK 500 3 VAL A 29 104.92 26.00 REMARK 500 3 ASN A 40 71.86 -111.18 REMARK 500 3 ALA A 53 -19.30 100.42 REMARK 500 4 THR A 4 -86.57 -87.63 REMARK 500 4 LEU A 9 97.82 73.48 REMARK 500 4 ILE A 14 -40.61 -135.36 REMARK 500 4 HIS A 27 1.01 45.02 REMARK 500 4 LYS A 35 157.42 109.42 REMARK 500 4 ASP A 36 -165.71 -120.60 REMARK 500 4 LYS A 82 17.07 58.56 REMARK 500 4 ASN A 83 19.69 56.70 REMARK 500 4 ILE A 84 119.05 36.95 REMARK 500 5 SER A 2 117.72 62.89 REMARK 500 5 THR A 4 -126.14 37.74 REMARK 500 5 CYS A 6 71.95 77.81 REMARK 500 5 PRO A 7 176.47 -49.01 REMARK 500 5 LEU A 9 126.75 67.19 REMARK 500 5 ILE A 14 -43.69 -131.03 REMARK 500 5 HIS A 27 2.01 43.94 REMARK 500 5 LYS A 35 155.84 115.72 REMARK 500 5 ASP A 36 -169.77 -120.13 REMARK 500 5 ASN A 40 144.73 61.49 REMARK 500 5 PRO A 44 106.95 -28.36 REMARK 500 5 ILE A 84 -140.61 36.55 REMARK 500 6 SER A 2 -123.84 46.93 REMARK 500 6 LEU A 9 48.55 36.55 REMARK 500 6 ASP A 11 120.06 53.64 REMARK 500 6 ILE A 14 -47.27 -146.57 REMARK 500 6 HIS A 27 -11.16 50.35 REMARK 500 REMARK 500 THIS ENTRY HAS 93 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 5 SER A 43 11.67 REMARK 500 6 SER A 43 11.30 REMARK 500 10 SER A 43 11.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 51083 RELATED DB: BMRB DBREF1 7SXB A 5 90 UNP A0A2D1LW19_HELBK DBREF2 7SXB A A0A2D1LW19 177 262 SEQADV 7SXB GLY A 1 UNP A0A2D1LW1 EXPRESSION TAG SEQADV 7SXB SER A 2 UNP A0A2D1LW1 EXPRESSION TAG SEQADV 7SXB GLY A 3 UNP A0A2D1LW1 EXPRESSION TAG SEQADV 7SXB THR A 4 UNP A0A2D1LW1 EXPRESSION TAG SEQRES 1 A 90 GLY SER GLY THR GLY CYS PRO PRO LEU PRO ASP ASP GLY SEQRES 2 A 90 ILE VAL PHE TYR GLU TYR TYR GLY TYR ALA GLY ASP ARG SEQRES 3 A 90 HIS THR VAL GLY PRO VAL VAL THR LYS ASP SER SER GLY SEQRES 4 A 90 ASN TYR PRO SER PRO THR HIS ALA ARG ARG ARG CYS ARG SEQRES 5 A 90 ALA LEU SER GLN GLU ALA ASP PRO GLY GLU PHE VAL ALA SEQRES 6 A 90 ILE CYS TYR LYS SER GLY THR THR GLY GLU SER HIS TRP SEQRES 7 A 90 GLU TYR TYR LYS ASN ILE GLY LYS CYS PRO ASP PRO SHEET 1 AA1 3 VAL A 15 PHE A 16 0 SHEET 2 AA1 3 THR A 45 CYS A 51 -1 O ARG A 50 N PHE A 16 SHEET 3 AA1 3 TYR A 19 GLY A 21 -1 N TYR A 20 O HIS A 46 SHEET 1 AA2 4 VAL A 15 PHE A 16 0 SHEET 2 AA2 4 THR A 45 CYS A 51 -1 O ARG A 50 N PHE A 16 SHEET 3 AA2 4 GLU A 62 LYS A 69 -1 O CYS A 67 N THR A 45 SHEET 4 AA2 4 SER A 76 TYR A 80 -1 O GLU A 79 N ILE A 66 SSBOND 1 CYS A 6 CYS A 67 1555 1555 2.03 SSBOND 2 CYS A 51 CYS A 87 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1