data_7SXI # _entry.id 7SXI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7SXI pdb_00007sxi 10.2210/pdb7sxi/pdb WWPDB D_1000261277 ? ? BMRB 30969 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution Structure of Sds3 Capped Tudor Domain' _pdbx_database_related.db_id 30969 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7SXI _pdbx_database_status.recvd_initial_deposition_date 2021-11-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Marcum, R.D.' 1 ? 'Radhakrishnan, I.' 2 0000-0002-0195-9710 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 298 _citation.language ? _citation.page_first 101558 _citation.page_last 101558 _citation.title 'A capped Tudor domain within a core subunit of the Sin3L/Rpd3L histone deacetylase complex binds to nucleic acid G-quadruplexes.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jbc.2021.101558 _citation.pdbx_database_id_PubMed 34979096 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Marcum, R.D.' 1 ? primary 'Hsieh, J.' 2 ? primary 'Giljen, M.' 3 ? primary 'Justice, E.' 4 ? primary 'Daffern, N.' 5 ? primary 'Zhang, Y.' 6 ? primary 'Radhakrishnan, I.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Sin3 histone deacetylase corepressor complex component SDS3' _entity.formula_weight 9390.714 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Suppressor of defective silencing 3 protein homolog' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SNAQRFEARIEDGKLYYDKRWYHKSQAIYLESKDNQKLSCVISSVGANEIWVRKTSDSTKMRIYVGQLQRGLFVIRRRS _entity_poly.pdbx_seq_one_letter_code_can SNAQRFEARIEDGKLYYDKRWYHKSQAIYLESKDNQKLSCVISSVGANEIWVRKTSDSTKMRIYVGQLQRGLFVIRRRS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 GLN n 1 5 ARG n 1 6 PHE n 1 7 GLU n 1 8 ALA n 1 9 ARG n 1 10 ILE n 1 11 GLU n 1 12 ASP n 1 13 GLY n 1 14 LYS n 1 15 LEU n 1 16 TYR n 1 17 TYR n 1 18 ASP n 1 19 LYS n 1 20 ARG n 1 21 TRP n 1 22 TYR n 1 23 HIS n 1 24 LYS n 1 25 SER n 1 26 GLN n 1 27 ALA n 1 28 ILE n 1 29 TYR n 1 30 LEU n 1 31 GLU n 1 32 SER n 1 33 LYS n 1 34 ASP n 1 35 ASN n 1 36 GLN n 1 37 LYS n 1 38 LEU n 1 39 SER n 1 40 CYS n 1 41 VAL n 1 42 ILE n 1 43 SER n 1 44 SER n 1 45 VAL n 1 46 GLY n 1 47 ALA n 1 48 ASN n 1 49 GLU n 1 50 ILE n 1 51 TRP n 1 52 VAL n 1 53 ARG n 1 54 LYS n 1 55 THR n 1 56 SER n 1 57 ASP n 1 58 SER n 1 59 THR n 1 60 LYS n 1 61 MET n 1 62 ARG n 1 63 ILE n 1 64 TYR n 1 65 VAL n 1 66 GLY n 1 67 GLN n 1 68 LEU n 1 69 GLN n 1 70 ARG n 1 71 GLY n 1 72 LEU n 1 73 PHE n 1 74 VAL n 1 75 ILE n 1 76 ARG n 1 77 ARG n 1 78 ARG n 1 79 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 79 _entity_src_gen.gene_src_common_name Mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Suds3, Sds3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SDS3_MOUSE _struct_ref.pdbx_db_accession Q8BR65 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code AQRFEARIEDGKLYYDKRWYHKSQAIYLESKDNQKLSCVISSVGANEIWVRKTSDSTKMRIYVGQLQRGLFVIRRRS _struct_ref.pdbx_align_begin 250 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7SXI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 79 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8BR65 _struct_ref_seq.db_align_beg 250 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 326 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 250 _struct_ref_seq.pdbx_auth_seq_align_end 326 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7SXI SER A 1 ? UNP Q8BR65 ? ? 'expression tag' 248 1 1 7SXI ASN A 2 ? UNP Q8BR65 ? ? 'expression tag' 249 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '3D 1H-15N NOESY' 1 isotropic 2 1 2 '3D 1H-13C NOESY aliphatic' 1 isotropic 3 1 2 '2D 1H-1H NOESY' 1 isotropic 4 1 2 '3D CBCA(CO)NH' 1 isotropic 5 1 2 '3D HNCACB' 1 isotropic 8 1 2 '3D HCCH-COSY' 1 isotropic 7 1 2 '3D HCCH-TOCSY' 1 isotropic 6 1 2 '3D C(CO)NH' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.07 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units M _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '0.35 mM [U-100% 15N] Sds3 CTD, 90% H2O/10% D2O' '90% H2O/10% D2O' 15N_sample solution '15N-labeled sample' 2 '0.35 mM [U-100% 13C; U-100% 15N] Sds3 CTD, 100% D2O' '100% D2O' 15N13C_sample solution '15N,13C-labeled sample' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'Direct Drive' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Agilent _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 7SXI _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # _pdbx_nmr_ensemble.entry_id 7SXI _pdbx_nmr_ensemble.conformers_calculated_total_number 80 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7SXI _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing Felix ? 'Accelrys Software Inc.' 2 refinement CNS 1.2 'Brunger, Adams, Clore, Gros, Nilges and Read' 3 'chemical shift assignment' NMRFAM-SPARKY ? 'Lee W, Tonelli M, Markley JL. Bioinformatics. 2015 Apr 15; 31(8):1325-7.' 4 'peak picking' NMRFAM-SPARKY ? 'Lee W, Tonelli M, Markley JL. Bioinformatics. 2015 Apr 15; 31(8):1325-7.' 5 'structure calculation' CNS 1.2 'Brunger, Adams, Clore, Gros, Nilges and Read' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7SXI _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7SXI _struct.title 'Solution Structure of Sds3 Capped Tudor Domain' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7SXI _struct_keywords.text 'Transcriptional corepressor, Tudor domain, Nucleic acid binding, G-quadruplex binding, GENE REGULATION' _struct_keywords.pdbx_keywords 'GENE REGULATION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id VAL _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 65 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 71 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id VAL _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 312 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 318 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA A 8 ? GLU A 11 ? ALA A 255 GLU A 258 AA1 2 LYS A 14 ? TYR A 17 ? LYS A 261 TYR A 264 AA1 3 ARG A 20 ? TYR A 22 ? ARG A 267 TYR A 269 AA2 1 LYS A 60 ? TYR A 64 ? LYS A 307 TYR A 311 AA2 2 GLU A 49 ? LYS A 54 ? GLU A 296 LYS A 301 AA2 3 LEU A 38 ? VAL A 45 ? LEU A 285 VAL A 292 AA2 4 ALA A 27 ? GLU A 31 ? ALA A 274 GLU A 278 AA2 5 VAL A 74 ? ARG A 78 ? VAL A 321 ARG A 325 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 9 ? N ARG A 256 O TYR A 16 ? O TYR A 263 AA1 2 3 N LEU A 15 ? N LEU A 262 O TYR A 22 ? O TYR A 269 AA2 1 2 O MET A 61 ? O MET A 308 N VAL A 52 ? N VAL A 299 AA2 2 3 O TRP A 51 ? O TRP A 298 N SER A 43 ? N SER A 290 AA2 3 4 O CYS A 40 ? O CYS A 287 N ILE A 28 ? N ILE A 275 AA2 4 5 N TYR A 29 ? N TYR A 276 O ARG A 76 ? O ARG A 323 # _atom_sites.entry_id 7SXI _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 248 248 SER SER A . n A 1 2 ASN 2 249 249 ASN ASN A . n A 1 3 ALA 3 250 250 ALA ALA A . n A 1 4 GLN 4 251 251 GLN GLN A . n A 1 5 ARG 5 252 252 ARG ARG A . n A 1 6 PHE 6 253 253 PHE PHE A . n A 1 7 GLU 7 254 254 GLU GLU A . n A 1 8 ALA 8 255 255 ALA ALA A . n A 1 9 ARG 9 256 256 ARG ARG A . n A 1 10 ILE 10 257 257 ILE ILE A . n A 1 11 GLU 11 258 258 GLU GLU A . n A 1 12 ASP 12 259 259 ASP ASP A . n A 1 13 GLY 13 260 260 GLY GLY A . n A 1 14 LYS 14 261 261 LYS LYS A . n A 1 15 LEU 15 262 262 LEU LEU A . n A 1 16 TYR 16 263 263 TYR TYR A . n A 1 17 TYR 17 264 264 TYR TYR A . n A 1 18 ASP 18 265 265 ASP ASP A . n A 1 19 LYS 19 266 266 LYS LYS A . n A 1 20 ARG 20 267 267 ARG ARG A . n A 1 21 TRP 21 268 268 TRP TRP A . n A 1 22 TYR 22 269 269 TYR TYR A . n A 1 23 HIS 23 270 270 HIS HIS A . n A 1 24 LYS 24 271 271 LYS LYS A . n A 1 25 SER 25 272 272 SER SER A . n A 1 26 GLN 26 273 273 GLN GLN A . n A 1 27 ALA 27 274 274 ALA ALA A . n A 1 28 ILE 28 275 275 ILE ILE A . n A 1 29 TYR 29 276 276 TYR TYR A . n A 1 30 LEU 30 277 277 LEU LEU A . n A 1 31 GLU 31 278 278 GLU GLU A . n A 1 32 SER 32 279 279 SER SER A . n A 1 33 LYS 33 280 280 LYS LYS A . n A 1 34 ASP 34 281 281 ASP ASP A . n A 1 35 ASN 35 282 282 ASN ASN A . n A 1 36 GLN 36 283 283 GLN GLN A . n A 1 37 LYS 37 284 284 LYS LYS A . n A 1 38 LEU 38 285 285 LEU LEU A . n A 1 39 SER 39 286 286 SER SER A . n A 1 40 CYS 40 287 287 CYS CYS A . n A 1 41 VAL 41 288 288 VAL VAL A . n A 1 42 ILE 42 289 289 ILE ILE A . n A 1 43 SER 43 290 290 SER SER A . n A 1 44 SER 44 291 291 SER SER A . n A 1 45 VAL 45 292 292 VAL VAL A . n A 1 46 GLY 46 293 293 GLY GLY A . n A 1 47 ALA 47 294 294 ALA ALA A . n A 1 48 ASN 48 295 295 ASN ASN A . n A 1 49 GLU 49 296 296 GLU GLU A . n A 1 50 ILE 50 297 297 ILE ILE A . n A 1 51 TRP 51 298 298 TRP TRP A . n A 1 52 VAL 52 299 299 VAL VAL A . n A 1 53 ARG 53 300 300 ARG ARG A . n A 1 54 LYS 54 301 301 LYS LYS A . n A 1 55 THR 55 302 302 THR THR A . n A 1 56 SER 56 303 303 SER SER A . n A 1 57 ASP 57 304 304 ASP ASP A . n A 1 58 SER 58 305 305 SER SER A . n A 1 59 THR 59 306 306 THR THR A . n A 1 60 LYS 60 307 307 LYS LYS A . n A 1 61 MET 61 308 308 MET MET A . n A 1 62 ARG 62 309 309 ARG ARG A . n A 1 63 ILE 63 310 310 ILE ILE A . n A 1 64 TYR 64 311 311 TYR TYR A . n A 1 65 VAL 65 312 312 VAL VAL A . n A 1 66 GLY 66 313 313 GLY GLY A . n A 1 67 GLN 67 314 314 GLN GLN A . n A 1 68 LEU 68 315 315 LEU LEU A . n A 1 69 GLN 69 316 316 GLN GLN A . n A 1 70 ARG 70 317 317 ARG ARG A . n A 1 71 GLY 71 318 318 GLY GLY A . n A 1 72 LEU 72 319 319 LEU LEU A . n A 1 73 PHE 73 320 320 PHE PHE A . n A 1 74 VAL 74 321 321 VAL VAL A . n A 1 75 ILE 75 322 322 ILE ILE A . n A 1 76 ARG 76 323 323 ARG ARG A . n A 1 77 ARG 77 324 324 ARG ARG A . n A 1 78 ARG 78 325 325 ARG ARG A . n A 1 79 SER 79 326 326 SER SER A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email i-radhakrishnan@northwesten.edu _pdbx_contact_author.name_first Ishwar _pdbx_contact_author.name_last Radhakrishnan _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0195-9710 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-01-19 2 'Structure model' 1 1 2022-02-09 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation.year' 4 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'Sds3 CTD' 0.35 ? mM '[U-100% 15N]' 2 'Sds3 CTD' 0.35 ? mM '[U-100% 13C; U-100% 15N]' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 OE1 A GLU 254 ? ? HZ1 A LYS 266 ? ? 1.60 2 6 HZ1 A LYS 301 ? ? OD1 A ASP 304 ? ? 1.58 3 9 HE1 A TYR 276 ? ? HG3 A ARG 325 ? ? 1.24 4 9 OE2 A GLU 278 ? ? HZ3 A LYS 284 ? ? 1.58 5 10 OE1 A GLU 254 ? ? HZ3 A LYS 266 ? ? 1.59 6 11 HB2 A HIS 270 ? ? HB2 A GLN 273 ? ? 1.27 7 14 OD1 A ASP 304 ? ? HG1 A THR 306 ? ? 1.59 8 17 HG3 A GLU 254 ? ? HE3 A LYS 266 ? ? 1.33 9 20 OE2 A GLU 254 ? ? HZ1 A LYS 266 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 259 ? ? 49.94 24.22 2 2 ASP A 265 ? ? 46.53 86.31 3 2 LYS A 266 ? ? 70.84 -6.16 4 2 ASN A 282 ? ? 77.22 -18.24 5 2 ASP A 304 ? ? -130.65 -32.88 6 3 ARG A 325 ? ? -108.48 78.00 7 4 LYS A 266 ? ? 68.44 -5.86 8 4 GLN A 283 ? ? 59.46 -155.66 9 5 ASN A 249 ? ? 71.21 -45.16 10 5 ASN A 295 ? ? -140.02 -37.69 11 5 ARG A 325 ? ? -151.33 88.47 12 6 ASN A 249 ? ? -104.60 -68.69 13 6 ALA A 250 ? ? -169.44 38.33 14 6 ASP A 265 ? ? 49.72 70.75 15 6 LYS A 284 ? ? -112.66 79.93 16 6 ASN A 295 ? ? -149.31 -11.50 17 7 ASP A 265 ? ? 55.54 77.80 18 7 LYS A 266 ? ? 63.27 -0.57 19 7 ASP A 281 ? ? -118.67 64.49 20 7 ASN A 282 ? ? 72.25 -62.62 21 8 LYS A 284 ? ? -56.82 105.78 22 9 ASN A 282 ? ? 60.34 60.20 23 10 GLN A 251 ? ? 70.23 122.92 24 10 ASN A 282 ? ? 75.85 -23.76 25 10 SER A 305 ? ? 72.60 -3.51 26 11 ALA A 250 ? ? 67.08 -174.03 27 11 ASP A 265 ? ? 50.36 76.92 28 11 SER A 272 ? ? -68.12 3.03 29 12 ASN A 249 ? ? -176.73 104.66 30 12 ALA A 250 ? ? 49.93 83.85 31 13 ASN A 295 ? ? -140.09 11.80 32 14 ASN A 249 ? ? 62.74 71.42 33 14 ASP A 265 ? ? 48.02 78.40 34 14 LYS A 266 ? ? 65.51 -0.46 35 14 ARG A 325 ? ? -173.23 132.91 36 16 ASP A 265 ? ? 40.32 82.88 37 16 LYS A 266 ? ? 74.60 -6.17 38 16 GLN A 283 ? ? 71.17 -173.66 39 17 ASN A 249 ? ? 69.74 -58.32 40 18 ASN A 282 ? ? 64.01 89.65 41 18 GLN A 283 ? ? -176.28 127.10 42 19 SER A 272 ? ? -69.31 0.87 43 20 ASN A 249 ? ? 64.42 97.38 # _pdbx_audit_support.funding_organization 'American Heart Association' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 17GRNT33680167 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details ? #