data_7SXN # _entry.id 7SXN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7SXN pdb_00007sxn 10.2210/pdb7sxn/pdb WWPDB D_1000261300 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-10-05 2 'Structure model' 1 1 2022-10-26 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' diffrn_radiation_wavelength 3 3 'Structure model' diffrn_source 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.title' 3 3 'Structure model' '_diffrn_source.pdbx_wavelength_list' 4 3 'Structure model' '_diffrn_source.source' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7SXN _pdbx_database_status.recvd_initial_deposition_date 2021-11-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_contact_author.id 2 _pdbx_contact_author.email david@mbi.ucla.edu _pdbx_contact_author.name_first David _pdbx_contact_author.name_last Eisenberg _pdbx_contact_author.name_mi S _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-2432-5419 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bowler, J.T.' 1 0000-0003-2428-3095 'Sawaya, M.R.' 2 0000-0003-0874-9043 'Boyer, D.R.' 3 0000-0002-4487-0230 'Cascio, D.' 4 0000-0002-3877-6803 'Eisenberg, D.S.' 5 0000-0003-2432-5419 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 298 _citation.language ? _citation.page_first 102396 _citation.page_last 102396 _citation.title ;Micro-electron diffraction structure of the aggregation-driving N terminus of Drosophila neuronal protein Orb2A reveals amyloid-like beta-sheets. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jbc.2022.102396 _citation.pdbx_database_id_PubMed 35988647 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bowler, J.T.' 1 ? primary 'Sawaya, M.R.' 2 ? primary 'Boyer, D.R.' 3 ? primary 'Cascio, D.' 4 ? primary 'Bali, M.' 5 ? primary 'Eisenberg, D.S.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Orb2A residues 1-9 MYNKFVNFI' 1176.406 1 ? ? ? ? 2 water nat water 18.015 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MYNKFVNFI _entity_poly.pdbx_seq_one_letter_code_can MYNKFVNFI _entity_poly.pdbx_strand_id AAA _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 TYR n 1 3 ASN n 1 4 LYS n 1 5 PHE n 1 6 VAL n 1 7 ASN n 1 8 PHE n 1 9 ILE n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Drosophila melanogaster' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 7227 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET AAA . n A 1 2 TYR 2 2 2 TYR TYR AAA . n A 1 3 ASN 3 3 3 ASN ASN AAA . n A 1 4 LYS 4 4 4 LYS LYS AAA . n A 1 5 PHE 5 5 5 PHE PHE AAA . n A 1 6 VAL 6 6 6 VAL VAL AAA . n A 1 7 ASN 7 7 7 ASN ASN AAA . n A 1 8 PHE 8 8 8 PHE PHE AAA . n A 1 9 ILE 9 9 9 ILE ILE AAA . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 4 HOH HOH AAA . B 2 HOH 2 102 2 HOH HOH AAA . B 2 HOH 3 103 3 HOH HOH AAA . B 2 HOH 4 104 1 HOH HOH AAA . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2 ? refinement ? ? 'Garib N. Murshudov' garib@ysbl.york.ac.uk ? ? ? ? Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html ? REFMAC ? ? program 5.8.0267 3 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Oct. 31, 2020' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.27 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 92.001 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7SXN _cell.details ? _cell.formula_units_Z ? _cell.length_a 4.830 _cell.length_a_esd ? _cell.length_b 23.100 _cell.length_b_esd ? _cell.length_c 29.840 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7SXN _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.preparation ? # _diffrn.ambient_environment ? _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.area_resol_mean ? _diffrn_detector.details ? _diffrn_detector.detector ? _diffrn_detector.diffrn_id 1 _diffrn_detector.dtime ? _diffrn_detector.pdbx_collection_date 2018-10-17 _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_frequency ? _diffrn_detector.type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.0251 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.0251 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ELECTRON MICROSCOPE' _diffrn_source.take-off_angle ? _diffrn_source.target ? _diffrn_source.type ? _diffrn_source.voltage ? # _reflns.B_iso_Wilson_estimate 12.406 _reflns.entry_id 7SXN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.050 _reflns.d_resolution_low 18.262 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2596 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 83.300 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.873 _reflns.pdbx_Rmerge_I_obs 0.156 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.240 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.835 _reflns.pdbx_scaling_rejects 59 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.161 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 36014 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.994 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 1.050 1.080 ? 1.790 ? 1101 219 ? 153 69.900 ? ? ? ? 0.712 ? ? ? ? ? ? ? ? 7.196 ? ? ? ? 0.776 ? ? 1 1 0.572 ? ? ? ? ? ? ? ? ? ? 1.080 1.110 ? 2.290 ? 1266 219 ? 157 71.700 ? ? ? ? 0.590 ? ? ? ? ? ? ? ? 8.064 ? ? ? ? 0.632 ? ? 2 1 0.785 ? ? ? ? ? ? ? ? ? ? 1.110 1.140 ? 3.680 ? 2084 227 ? 181 79.700 ? ? ? ? 0.473 ? ? ? ? ? ? ? ? 11.514 ? ? ? ? 0.493 ? ? 3 1 0.902 ? ? ? ? ? ? ? ? ? ? 1.140 1.170 ? 4.690 ? 2667 227 ? 185 81.500 ? ? ? ? 0.439 ? ? ? ? ? ? ? ? 14.416 ? ? ? ? 0.456 ? ? 4 1 0.824 ? ? ? ? ? ? ? ? ? ? 1.170 1.210 ? 5.130 ? 3031 221 ? 196 88.700 ? ? ? ? 0.423 ? ? ? ? ? ? ? ? 15.464 ? ? ? ? 0.438 ? ? 5 1 0.863 ? ? ? ? ? ? ? ? ? ? 1.210 1.260 ? 4.730 ? 2019 180 ? 154 85.600 ? ? ? ? 0.431 ? ? ? ? ? ? ? ? 13.110 ? ? ? ? 0.449 ? ? 6 1 0.856 ? ? ? ? ? ? ? ? ? ? 1.260 1.300 ? 5.270 ? 1999 181 ? 156 86.200 ? ? ? ? 0.362 ? ? ? ? ? ? ? ? 12.814 ? ? ? ? 0.379 ? ? 7 1 0.950 ? ? ? ? ? ? ? ? ? ? 1.300 1.360 ? 6.080 ? 2017 169 ? 147 87.000 ? ? ? ? 0.343 ? ? ? ? ? ? ? ? 13.721 ? ? ? ? 0.357 ? ? 8 1 0.972 ? ? ? ? ? ? ? ? ? ? 1.360 1.420 ? 6.880 ? 2367 173 ? 153 88.400 ? ? ? ? 0.332 ? ? ? ? ? ? ? ? 15.471 ? ? ? ? 0.343 ? ? 9 1 0.919 ? ? ? ? ? ? ? ? ? ? 1.420 1.480 ? 8.770 ? 2757 179 ? 157 87.700 ? ? ? ? 0.313 ? ? ? ? ? ? ? ? 17.561 ? ? ? ? 0.323 ? ? 10 1 0.892 ? ? ? ? ? ? ? ? ? ? 1.480 1.570 ? 11.580 ? 2981 181 ? 161 89.000 ? ? ? ? 0.210 ? ? ? ? ? ? ? ? 18.516 ? ? ? ? 0.216 ? ? 11 1 0.983 ? ? ? ? ? ? ? ? ? ? 1.570 1.660 ? 11.960 ? 2152 156 ? 133 85.300 ? ? ? ? 0.195 ? ? ? ? ? ? ? ? 16.180 ? ? ? ? 0.202 ? ? 12 1 0.958 ? ? ? ? ? ? ? ? ? ? 1.660 1.770 ? 10.870 ? 1383 131 ? 111 84.700 ? ? ? ? 0.211 ? ? ? ? ? ? ? ? 12.459 ? ? ? ? 0.221 ? ? 13 1 0.979 ? ? ? ? ? ? ? ? ? ? 1.770 1.920 ? 12.490 ? 1312 117 ? 101 86.300 ? ? ? ? 0.196 ? ? ? ? ? ? ? ? 12.990 ? ? ? ? 0.205 ? ? 14 1 0.969 ? ? ? ? ? ? ? ? ? ? 1.920 2.100 ? 14.980 ? 1686 133 ? 115 86.500 ? ? ? ? 0.172 ? ? ? ? ? ? ? ? 14.661 ? ? ? ? 0.179 ? ? 15 1 0.985 ? ? ? ? ? ? ? ? ? ? 2.100 2.350 ? 17.640 ? 2000 125 ? 108 86.400 ? ? ? ? 0.162 ? ? ? ? ? ? ? ? 18.519 ? ? ? ? 0.168 ? ? 16 1 0.971 ? ? ? ? ? ? ? ? ? ? 2.350 2.710 ? 16.100 ? 1055 93 ? 74 79.600 ? ? ? ? 0.148 ? ? ? ? ? ? ? ? 14.257 ? ? ? ? 0.153 ? ? 17 1 0.992 ? ? ? ? ? ? ? ? ? ? 2.710 3.320 ? 15.740 ? 781 76 ? 62 81.600 ? ? ? ? 0.120 ? ? ? ? ? ? ? ? 12.597 ? ? ? ? 0.125 ? ? 18 1 0.986 ? ? ? ? ? ? ? ? ? ? 3.320 4.700 ? 18.660 ? 1142 80 ? 72 90.000 ? ? ? ? 0.097 ? ? ? ? ? ? ? ? 15.861 ? ? ? ? 0.101 ? ? 19 1 0.991 ? ? ? ? ? ? ? ? ? ? 4.700 18.262 ? 14.480 ? 214 31 ? 20 64.500 ? ? ? ? 0.147 ? ? ? ? ? ? ? ? 10.700 ? ? ? ? 0.151 ? ? 20 1 0.993 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] 0.579 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] 0.131 _refine.aniso_B[2][2] -0.410 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] -0.178 _refine.B_iso_max ? _refine.B_iso_mean 10.716 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.972 _refine.correlation_coeff_Fo_to_Fc_free 0.970 _refine.details 'Hydrogens have been used if present in the input file' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7SXN _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.050 _refine.ls_d_res_low 18.262 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2596 _refine.ls_number_reflns_R_free 260 _refine.ls_number_reflns_R_work 2336 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 83.258 _refine.ls_percent_reflns_R_free 10.015 _refine.ls_R_factor_all 0.183 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2010 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1809 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.050 _refine.pdbx_overall_ESU_R_Free 0.045 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.226 _refine.overall_SU_ML 0.046 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.015 0.012 85 ? r_bond_refined_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.003 0.018 82 ? r_bond_other_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.843 1.654 113 ? r_angle_refined_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.638 1.603 185 ? r_angle_other_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 6.544 5.000 8 ? r_dihedral_angle_1_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 47.531 24.000 5 ? r_dihedral_angle_2_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 15.062 15.000 15 ? r_dihedral_angle_3_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.108 0.200 10 ? r_chiral_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.011 0.020 98 ? r_gen_planes_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.002 0.020 26 ? r_gen_planes_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.138 0.200 8 ? r_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.191 0.200 52 ? r_symmetry_nbd_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.194 0.200 39 ? r_nbtor_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.079 0.200 44 ? r_symmetry_nbtor_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.254 0.200 1 ? r_xyhbond_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.051 0.200 5 ? r_symmetry_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.234 0.200 19 ? r_nbd_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.356 0.200 1 ? r_symmetry_xyhbond_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.543 0.770 35 ? r_mcbond_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.104 0.734 34 ? r_mcbond_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.346 1.161 40 ? r_mcangle_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.345 1.171 41 ? r_mcangle_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 3.036 0.996 50 ? r_scbond_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 3.037 0.979 50 ? r_scbond_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.536 1.371 70 ? r_scangle_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.518 1.373 71 ? r_scangle_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 3.303 8.661 82 ? r_lrange_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 3.298 8.765 83 ? r_lrange_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 9.469 3.000 167 ? r_rigid_bond_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 1.050 1.173 890 . 67 607 75.7303 . 0.240 . 0.303 . 0.233 . . . . . 0.192 . 5 . 0.908 0.882 'ELECTRON CRYSTALLOGRAPHY' 1.173 1.354 750 . 66 587 87.0667 . 0.204 . 0.240 . 0.200 . . . . . 0.175 . 5 . 0.911 0.875 'ELECTRON CRYSTALLOGRAPHY' 1.354 1.656 686 . 60 541 87.6093 . 0.185 . 0.243 . 0.178 . . . . . 0.171 . 5 . 0.939 0.914 'ELECTRON CRYSTALLOGRAPHY' 1.656 2.332 508 . 43 393 85.8268 . 0.192 . 0.214 . 0.190 . . . . . 0.214 . 5 . 0.942 0.942 'ELECTRON CRYSTALLOGRAPHY' 2.332 18.262 283 . 24 208 81.9788 . 0.145 . 0.133 . 0.147 . . . . . 0.172 . 5 . 0.974 0.979 # _struct.entry_id 7SXN _struct.title 'Orb2A residues 1-9 MYNKFVNFI' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7SXN _struct_keywords.text 'amyloid, long-term memory, micro-ED, Orb2A, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7SXN _struct_ref.pdbx_db_accession 7SXN _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7SXN _struct_ref_seq.pdbx_strand_id AAA _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 9 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7SXN _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 9 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 9 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 1 2 A,B 1 3 A,B 1 4 A,B 1 5 A,B 1 6 A,B 1 7 A,B 1 8 A,B 1 9 A,B 1 10 A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 4.8300000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_755 x+2,y,z 1.0000000000 0.0000000000 0.0000000000 9.6600000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_855 x+3,y,z 1.0000000000 0.0000000000 0.0000000000 14.4900000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_955 x+4,y,z 1.0000000000 0.0000000000 0.0000000000 19.3200000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 2_546 -x,y-1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 -1.0419214704 0.0000000000 1.0000000000 0.0000000000 -11.5500000000 0.0000000000 0.0000000000 -1.0000000000 29.8218040978 7 'crystal symmetry operation' 2_646 -x+1,y-1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 3.7880785296 0.0000000000 1.0000000000 0.0000000000 -11.5500000000 0.0000000000 0.0000000000 -1.0000000000 29.8218040978 8 'crystal symmetry operation' 2_746 -x+2,y-1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 8.6180785296 0.0000000000 1.0000000000 0.0000000000 -11.5500000000 0.0000000000 0.0000000000 -1.0000000000 29.8218040978 9 'crystal symmetry operation' 2_846 -x+3,y-1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 13.4480785296 0.0000000000 1.0000000000 0.0000000000 -11.5500000000 0.0000000000 0.0000000000 -1.0000000000 29.8218040978 10 'crystal symmetry operation' 2_946 -x+4,y-1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 18.2780785296 0.0000000000 1.0000000000 0.0000000000 -11.5500000000 0.0000000000 0.0000000000 -1.0000000000 29.8218040978 # _em_3d_fitting.entry_id 7SXN _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7SXN _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 4.6 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Amyloid fibril of Orb2A residues 1-9 MYNKFVNFI' _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7SXN _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7SXN _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7SXN _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 HOH O O N N 18 HOH H1 H N N 19 HOH H2 H N N 20 ILE N N N N 21 ILE CA C N S 22 ILE C C N N 23 ILE O O N N 24 ILE CB C N S 25 ILE CG1 C N N 26 ILE CG2 C N N 27 ILE CD1 C N N 28 ILE OXT O N N 29 ILE H H N N 30 ILE H2 H N N 31 ILE HA H N N 32 ILE HB H N N 33 ILE HG12 H N N 34 ILE HG13 H N N 35 ILE HG21 H N N 36 ILE HG22 H N N 37 ILE HG23 H N N 38 ILE HD11 H N N 39 ILE HD12 H N N 40 ILE HD13 H N N 41 ILE HXT H N N 42 LYS N N N N 43 LYS CA C N S 44 LYS C C N N 45 LYS O O N N 46 LYS CB C N N 47 LYS CG C N N 48 LYS CD C N N 49 LYS CE C N N 50 LYS NZ N N N 51 LYS OXT O N N 52 LYS H H N N 53 LYS H2 H N N 54 LYS HA H N N 55 LYS HB2 H N N 56 LYS HB3 H N N 57 LYS HG2 H N N 58 LYS HG3 H N N 59 LYS HD2 H N N 60 LYS HD3 H N N 61 LYS HE2 H N N 62 LYS HE3 H N N 63 LYS HZ1 H N N 64 LYS HZ2 H N N 65 LYS HZ3 H N N 66 LYS HXT H N N 67 MET N N N N 68 MET CA C N S 69 MET C C N N 70 MET O O N N 71 MET CB C N N 72 MET CG C N N 73 MET SD S N N 74 MET CE C N N 75 MET OXT O N N 76 MET H H N N 77 MET H2 H N N 78 MET HA H N N 79 MET HB2 H N N 80 MET HB3 H N N 81 MET HG2 H N N 82 MET HG3 H N N 83 MET HE1 H N N 84 MET HE2 H N N 85 MET HE3 H N N 86 MET HXT H N N 87 PHE N N N N 88 PHE CA C N S 89 PHE C C N N 90 PHE O O N N 91 PHE CB C N N 92 PHE CG C Y N 93 PHE CD1 C Y N 94 PHE CD2 C Y N 95 PHE CE1 C Y N 96 PHE CE2 C Y N 97 PHE CZ C Y N 98 PHE OXT O N N 99 PHE H H N N 100 PHE H2 H N N 101 PHE HA H N N 102 PHE HB2 H N N 103 PHE HB3 H N N 104 PHE HD1 H N N 105 PHE HD2 H N N 106 PHE HE1 H N N 107 PHE HE2 H N N 108 PHE HZ H N N 109 PHE HXT H N N 110 TYR N N N N 111 TYR CA C N S 112 TYR C C N N 113 TYR O O N N 114 TYR CB C N N 115 TYR CG C Y N 116 TYR CD1 C Y N 117 TYR CD2 C Y N 118 TYR CE1 C Y N 119 TYR CE2 C Y N 120 TYR CZ C Y N 121 TYR OH O N N 122 TYR OXT O N N 123 TYR H H N N 124 TYR H2 H N N 125 TYR HA H N N 126 TYR HB2 H N N 127 TYR HB3 H N N 128 TYR HD1 H N N 129 TYR HD2 H N N 130 TYR HE1 H N N 131 TYR HE2 H N N 132 TYR HH H N N 133 TYR HXT H N N 134 VAL N N N N 135 VAL CA C N S 136 VAL C C N N 137 VAL O O N N 138 VAL CB C N N 139 VAL CG1 C N N 140 VAL CG2 C N N 141 VAL OXT O N N 142 VAL H H N N 143 VAL H2 H N N 144 VAL HA H N N 145 VAL HB H N N 146 VAL HG11 H N N 147 VAL HG12 H N N 148 VAL HG13 H N N 149 VAL HG21 H N N 150 VAL HG22 H N N 151 VAL HG23 H N N 152 VAL HXT H N N 153 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 HOH O H1 sing N N 17 HOH O H2 sing N N 18 ILE N CA sing N N 19 ILE N H sing N N 20 ILE N H2 sing N N 21 ILE CA C sing N N 22 ILE CA CB sing N N 23 ILE CA HA sing N N 24 ILE C O doub N N 25 ILE C OXT sing N N 26 ILE CB CG1 sing N N 27 ILE CB CG2 sing N N 28 ILE CB HB sing N N 29 ILE CG1 CD1 sing N N 30 ILE CG1 HG12 sing N N 31 ILE CG1 HG13 sing N N 32 ILE CG2 HG21 sing N N 33 ILE CG2 HG22 sing N N 34 ILE CG2 HG23 sing N N 35 ILE CD1 HD11 sing N N 36 ILE CD1 HD12 sing N N 37 ILE CD1 HD13 sing N N 38 ILE OXT HXT sing N N 39 LYS N CA sing N N 40 LYS N H sing N N 41 LYS N H2 sing N N 42 LYS CA C sing N N 43 LYS CA CB sing N N 44 LYS CA HA sing N N 45 LYS C O doub N N 46 LYS C OXT sing N N 47 LYS CB CG sing N N 48 LYS CB HB2 sing N N 49 LYS CB HB3 sing N N 50 LYS CG CD sing N N 51 LYS CG HG2 sing N N 52 LYS CG HG3 sing N N 53 LYS CD CE sing N N 54 LYS CD HD2 sing N N 55 LYS CD HD3 sing N N 56 LYS CE NZ sing N N 57 LYS CE HE2 sing N N 58 LYS CE HE3 sing N N 59 LYS NZ HZ1 sing N N 60 LYS NZ HZ2 sing N N 61 LYS NZ HZ3 sing N N 62 LYS OXT HXT sing N N 63 MET N CA sing N N 64 MET N H sing N N 65 MET N H2 sing N N 66 MET CA C sing N N 67 MET CA CB sing N N 68 MET CA HA sing N N 69 MET C O doub N N 70 MET C OXT sing N N 71 MET CB CG sing N N 72 MET CB HB2 sing N N 73 MET CB HB3 sing N N 74 MET CG SD sing N N 75 MET CG HG2 sing N N 76 MET CG HG3 sing N N 77 MET SD CE sing N N 78 MET CE HE1 sing N N 79 MET CE HE2 sing N N 80 MET CE HE3 sing N N 81 MET OXT HXT sing N N 82 PHE N CA sing N N 83 PHE N H sing N N 84 PHE N H2 sing N N 85 PHE CA C sing N N 86 PHE CA CB sing N N 87 PHE CA HA sing N N 88 PHE C O doub N N 89 PHE C OXT sing N N 90 PHE CB CG sing N N 91 PHE CB HB2 sing N N 92 PHE CB HB3 sing N N 93 PHE CG CD1 doub Y N 94 PHE CG CD2 sing Y N 95 PHE CD1 CE1 sing Y N 96 PHE CD1 HD1 sing N N 97 PHE CD2 CE2 doub Y N 98 PHE CD2 HD2 sing N N 99 PHE CE1 CZ doub Y N 100 PHE CE1 HE1 sing N N 101 PHE CE2 CZ sing Y N 102 PHE CE2 HE2 sing N N 103 PHE CZ HZ sing N N 104 PHE OXT HXT sing N N 105 TYR N CA sing N N 106 TYR N H sing N N 107 TYR N H2 sing N N 108 TYR CA C sing N N 109 TYR CA CB sing N N 110 TYR CA HA sing N N 111 TYR C O doub N N 112 TYR C OXT sing N N 113 TYR CB CG sing N N 114 TYR CB HB2 sing N N 115 TYR CB HB3 sing N N 116 TYR CG CD1 doub Y N 117 TYR CG CD2 sing Y N 118 TYR CD1 CE1 sing Y N 119 TYR CD1 HD1 sing N N 120 TYR CD2 CE2 doub Y N 121 TYR CD2 HD2 sing N N 122 TYR CE1 CZ doub Y N 123 TYR CE1 HE1 sing N N 124 TYR CE2 CZ sing Y N 125 TYR CE2 HE2 sing N N 126 TYR CZ OH sing N N 127 TYR OH HH sing N N 128 TYR OXT HXT sing N N 129 VAL N CA sing N N 130 VAL N H sing N N 131 VAL N H2 sing N N 132 VAL CA C sing N N 133 VAL CA CB sing N N 134 VAL CA HA sing N N 135 VAL C O doub N N 136 VAL C OXT sing N N 137 VAL CB CG1 sing N N 138 VAL CB CG2 sing N N 139 VAL CB HB sing N N 140 VAL CG1 HG11 sing N N 141 VAL CG1 HG12 sing N N 142 VAL CG1 HG13 sing N N 143 VAL CG2 HG21 sing N N 144 VAL CG2 HG22 sing N N 145 VAL CG2 HG23 sing N N 146 VAL OXT HXT sing N N 147 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90.0 _em_3d_crystal_entity.angle_beta 92.0 _em_3d_crystal_entity.angle_gamma 90.0 _em_3d_crystal_entity.length_a 4.83 _em_3d_crystal_entity.length_b 23.1 _em_3d_crystal_entity.length_c 29.8 _em_3d_crystal_entity.space_group_name 'P 21' _em_3d_crystal_entity.space_group_num 4 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 1344 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 69.9 _em_diffraction_shell.high_resolution 1.05 _em_diffraction_shell.low_resolution 1.08 _em_diffraction_shell.multiplicity 7.2 _em_diffraction_shell.num_structure_factors 1101 _em_diffraction_shell.phase_residual 0.1 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 83.3 _em_diffraction_stats.high_resolution 1.05 _em_diffraction_stats.num_intensities_measured 36014 _em_diffraction_stats.num_structure_factors 2596 _em_diffraction_stats.overall_phase_error ? _em_diffraction_stats.overall_phase_residual ? _em_diffraction_stats.phase_error_rejection_criteria 0.1 _em_diffraction_stats.r_merge 15.6 _em_diffraction_stats.r_sym ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.01 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI CETA (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? ? ? ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? ? ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'MCB 1616265' _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 7SXN _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.207039 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007234 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.043290 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033533 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 C 0.214 0.247 0.613 1.710 1.810 6.409 2.508 18.611 H 0.066 0.535 0.227 3.587 0.373 12.347 0.108 18.952 N 0.323 0.245 1.018 1.748 2.524 6.193 2.592 17.389 O 0.393 0.207 1.178 1.382 2.787 4.694 2.819 12.710 S 0.774 0.268 1.745 1.671 4.309 7.027 6.779 19.538 # loop_