HEADER TRANSFERASE 24-NOV-21 7SYB TITLE CRYSTAL STRUCTURE OF SULFURTRANSFERASE (DSRC FAMILY PROTEIN) FROM TITLE 2 ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFURTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 STRAIN: P60155_2; SOURCE 5 GENE: TUSE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: ACBAC.18888.A.B1 KEYWDS SSGCID, SULFURTRANSFERASE, DSRC FAMILY PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 28-FEB-24 7SYB 1 REMARK REVDAT 1 08-DEC-21 7SYB 0 JRNL AUTH B.M.CALHOUN,M.J.BOLEJACK,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF SULFURTRANSFERASE (DSRC FAMILY PROTEIN) JRNL TITL 2 FROM ACINETOBACTER BAUMANNII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 4220 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.550 REMARK 3 FREE R VALUE TEST SET COUNT : 1913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2900 - 3.4900 1.00 1325 150 0.1319 0.1349 REMARK 3 2 3.4900 - 2.7700 1.00 1293 142 0.1385 0.1652 REMARK 3 3 2.7700 - 2.4200 1.00 1301 144 0.1479 0.1659 REMARK 3 4 2.4200 - 2.2000 1.00 1304 122 0.1375 0.1831 REMARK 3 5 2.2000 - 2.0400 1.00 1282 130 0.1420 0.1757 REMARK 3 6 2.0400 - 1.9200 1.00 1325 128 0.1330 0.1904 REMARK 3 7 1.9200 - 1.8300 1.00 1288 146 0.1398 0.1956 REMARK 3 8 1.8300 - 1.7500 1.00 1275 149 0.1523 0.1911 REMARK 3 9 1.7500 - 1.6800 1.00 1283 136 0.1325 0.1817 REMARK 3 10 1.6800 - 1.6200 1.00 1283 126 0.1270 0.1886 REMARK 3 11 1.6200 - 1.5700 1.00 1293 142 0.1289 0.1743 REMARK 3 12 1.5700 - 1.5300 1.00 1274 140 0.1316 0.1847 REMARK 3 13 1.5300 - 1.4900 1.00 1319 124 0.1498 0.1940 REMARK 3 14 1.4900 - 1.4500 1.00 1276 134 0.1853 0.2411 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000261298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20040 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 29.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.074 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.07 REMARK 200 R MERGE FOR SHELL (I) : 0.54900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MR-ROSETTA REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ACBAC.18888.A.B1.PW38910 AT 13 MG/ML REMARK 280 WAS MIXED 1:1 (0.4 UL PROTEIN AND 0.4 UL PRECIPITANT) WITH 0.02M REMARK 280 CALCIUM CHLORIDE DIHYDRATE, 0.1M SODIUM ACTETATE PH 4.6, 30% V/V REMARK 280 MPD (JCSG+ A4). CRYO: DIRECT. PUCK: OKJ-1-3, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.42000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 78 O HOH A 201 1.93 REMARK 500 OE1 GLU A 32 O HOH A 202 2.07 REMARK 500 O HOH A 300 O HOH A 303 2.16 REMARK 500 REMARK 500 REMARK: NULL DBREF 7SYB A 1 103 UNP V5VCI8 V5VCI8_ACIBA 1 103 SEQADV 7SYB MET A -7 UNP V5VCI8 INITIATING METHIONINE SEQADV 7SYB ALA A -6 UNP V5VCI8 EXPRESSION TAG SEQADV 7SYB HIS A -5 UNP V5VCI8 EXPRESSION TAG SEQADV 7SYB HIS A -4 UNP V5VCI8 EXPRESSION TAG SEQADV 7SYB HIS A -3 UNP V5VCI8 EXPRESSION TAG SEQADV 7SYB HIS A -2 UNP V5VCI8 EXPRESSION TAG SEQADV 7SYB HIS A -1 UNP V5VCI8 EXPRESSION TAG SEQADV 7SYB HIS A 0 UNP V5VCI8 EXPRESSION TAG SEQRES 1 A 111 MET ALA HIS HIS HIS HIS HIS HIS MET ASN LEU GLU LEU SEQRES 2 A 111 ASP GLN ASP GLY HIS LEU VAL ASP TYR THR ILE TRP ASN SEQRES 3 A 111 PRO GLU VAL ALA GLN GLU LEU ALA LYS SER LEU ASP LEU SEQRES 4 A 111 GLU LEU THR ASP TRP HIS PHE GLU VAL LEU ALA ALA VAL SEQRES 5 A 111 ARG GLN PHE TYR GLN GLN PHE GLY HIS SER PRO ALA THR SEQRES 6 A 111 ARG PRO LEU ILE LYS PHE LEU MET LYS THR VAL SER PRO SEQRES 7 A 111 ASP ILE ASN ASN ALA VAL LEU GLN GLN LYS PHE ASN THR SEQRES 8 A 111 GLY LEU VAL ALA ARG HIS LEU SER ARG LEU ALA GLY ILE SEQRES 9 A 111 PRO LYS PRO ALA ASN CYS LEU FORMUL 2 HOH *143(H2 O) HELIX 1 AA1 ASP A 13 TRP A 17 5 5 HELIX 2 AA2 ASN A 18 LYS A 27 1 10 HELIX 3 AA3 SER A 28 ASP A 30 5 3 HELIX 4 AA4 THR A 34 GLY A 52 1 19 HELIX 5 AA5 ALA A 56 VAL A 68 1 13 HELIX 6 AA6 ASN A 73 ASN A 82 1 10 HELIX 7 AA7 LEU A 85 ALA A 94 1 10 CRYST1 32.500 46.840 39.480 90.00 108.02 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030769 0.000000 0.010009 0.00000 SCALE2 0.000000 0.021349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026636 0.00000