HEADER IMMUNE SYSTEM/RNA 29-NOV-21 7SZU TITLE CRYSTAL STRUCTURE OF PEPPER RNA APTAMER IN COMPLEX WITH HBC LIGAND AND TITLE 2 FAB BL3-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA APTAMER; COMPND 3 CHAIN: R; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BL3-6 FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: BL3-6 FAB LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLUOROGENIC, IMMUNE SYSTEM-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.C.REES,J.A.PICCIRILLI REVDAT 3 18-OCT-23 7SZU 1 REMARK REVDAT 2 27-JUL-22 7SZU 1 JRNL REVDAT 1 06-JUL-22 7SZU 0 JRNL AUTH H.C.REES,W.GOGACZ,N.S.LI,D.KOIRALA,J.A.PICCIRILLI JRNL TITL STRUCTURAL BASIS FOR FLUORESCENCE ACTIVATION BY PEPPER RNA. JRNL REF ACS CHEM.BIOL. V. 17 1866 2022 JRNL REFN ESSN 1554-8937 JRNL PMID 35759696 JRNL DOI 10.1021/ACSCHEMBIO.2C00290 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 43546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.590 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.9000 - 5.4000 1.00 3165 153 0.2036 0.2326 REMARK 3 2 5.3900 - 4.2800 1.00 3044 145 0.1675 0.1897 REMARK 3 3 4.2800 - 3.7400 1.00 3001 146 0.1930 0.2381 REMARK 3 4 3.7400 - 3.4000 1.00 2983 143 0.2086 0.2677 REMARK 3 5 3.4000 - 3.1600 1.00 2956 141 0.2401 0.2887 REMARK 3 6 3.1500 - 2.9700 1.00 2951 142 0.2401 0.2619 REMARK 3 7 2.9700 - 2.8200 1.00 2960 143 0.2736 0.3639 REMARK 3 8 2.8200 - 2.7000 1.00 2949 141 0.2980 0.3954 REMARK 3 9 2.7000 - 2.5900 1.00 2942 142 0.2957 0.3700 REMARK 3 10 2.5900 - 2.5000 1.00 2928 141 0.2841 0.3345 REMARK 3 11 2.5000 - 2.4300 1.00 2923 141 0.3066 0.3544 REMARK 3 12 2.4300 - 2.3600 1.00 2924 140 0.3103 0.3788 REMARK 3 13 2.3600 - 2.2900 1.00 2918 142 0.3341 0.4017 REMARK 3 14 2.2900 - 2.2400 0.99 2903 139 0.3508 0.4111 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.387 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.642 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5009 REMARK 3 ANGLE : 0.582 7125 REMARK 3 CHIRALITY : 0.038 849 REMARK 3 PLANARITY : 0.003 658 REMARK 3 DIHEDRAL : 14.367 2005 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SZU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000261401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979180 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43646 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.239 REMARK 200 RESOLUTION RANGE LOW (A) : 148.255 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KZD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M MAGNESIUM SULFATE HYDRATE 0.002 REMARK 280 M COBALT(II) CHLORIDE HEXAHYDRATE 0.05 M SODIUM CACODYLATE REMARK 280 TRIHYDRATE PH 6.0 25% V/V (+/-)-2-METHYL-2,4-PENTANEDIOL, 0.0005 REMARK 280 M SPERMINE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.80450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.12750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.49600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.12750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.80450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.49600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLN L 80 OD2 ASP L 83 1.57 REMARK 500 O PRO L 41 HZ3 LYS L 43 1.57 REMARK 500 O HOH R 237 O HOH R 274 2.11 REMARK 500 O PRO L 41 NZ LYS L 43 2.12 REMARK 500 OP2 G R 63 O HOH R 201 2.16 REMARK 500 O HOH L 304 O HOH L 328 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G R 2 O3' - P - OP2 ANGL. DEV. = 25.0 DEGREES REMARK 500 G R 2 O3' - P - OP1 ANGL. DEV. = -23.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR H 57 -49.84 68.18 REMARK 500 LYS H 79 67.40 139.45 REMARK 500 ASN H 80 70.30 -44.96 REMARK 500 ALA H 95 169.37 175.49 REMARK 500 SER H 142 84.90 68.35 REMARK 500 ASP H 156 73.52 62.32 REMARK 500 PHE H 158 138.88 -170.17 REMARK 500 PRO H 225 173.93 -56.15 REMARK 500 SER L 31 -129.54 53.24 REMARK 500 ALA L 52 -41.35 76.38 REMARK 500 ALA L 85 176.01 173.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG R 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A R 11 OP2 REMARK 620 2 HOH R 274 O 82.6 REMARK 620 3 HOH R 290 O 176.8 97.4 REMARK 620 4 HOH R 296 O 81.8 73.2 95.1 REMARK 620 5 HOH R 339 O 94.3 155.7 84.4 82.5 REMARK 620 6 HOH R 352 O 102.7 101.7 80.4 172.9 102.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA R 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C R 24 OP2 REMARK 620 2 HOH R 253 O 127.7 REMARK 620 3 HOH R 323 O 104.0 94.3 REMARK 620 4 HOH R 380 O 132.0 98.9 79.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG R 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C R 52 OP2 REMARK 620 2 U R 53 OP2 102.1 REMARK 620 3 HOH R 224 O 175.2 79.7 REMARK 620 4 HOH R 226 O 98.2 157.7 79.4 REMARK 620 5 HOH R 265 O 100.5 88.4 75.0 78.7 REMARK 620 N 1 2 3 4 DBREF 7SZU R 1 67 PDB 7SZU 7SZU 1 67 DBREF 7SZU H 4 227 PDB 7SZU 7SZU 4 227 DBREF 7SZU L 2 214 PDB 7SZU 7SZU 2 214 SEQRES 1 R 67 GTP G U A C C U A C C A A U SEQRES 2 R 67 C G U A G C G U G U C G A SEQRES 3 R 67 C C A G C U G C G A A A C SEQRES 4 R 67 A C G C A G C U G G C A C SEQRES 5 R 67 U G G C G C U G U A G G U SEQRES 6 R 67 A C SEQRES 1 H 224 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 224 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 224 PHE TYR ILE SER TYR SER SER ILE HIS TRP VAL ARG GLN SEQRES 4 H 224 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SER ILE SER SEQRES 5 H 224 PRO TYR SER GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 224 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 H 224 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 224 ALA VAL TYR TYR CYS ALA ARG GLN GLY TYR ARG ARG ARG SEQRES 9 H 224 SER GLY ARG GLY PHE ASP TYR TRP GLY GLN GLY THR LEU SEQRES 10 H 224 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 224 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 224 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 224 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 224 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 224 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 224 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 224 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 H 224 PRO LYS SER SEQRES 1 L 213 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 213 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 213 GLN SER VAL SER SER ALA VAL ALA TRP TYR GLN GLN LYS SEQRES 4 L 213 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SER SEQRES 5 L 213 SER LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 213 ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 213 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SER SEQRES 8 L 213 TYR SER PHE PRO SER THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 213 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 213 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 213 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 213 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 213 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 213 PHE ASN ARG GLY GLU HET GTP R 1 43 HET MG R 101 1 HET MG R 102 1 HET J8F R 103 40 HET NA R 104 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM J8F 4-[(~{Z})-1-CYANO-2-[4-[2-HYDROXYETHYL(METHYL) HETNAM 2 J8F AMINO]PHENYL]ETHENYL]BENZENECARBONITRILE HETNAM NA SODIUM ION FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 4 MG 2(MG 2+) FORMUL 6 J8F C19 H17 N3 O FORMUL 7 NA NA 1+ FORMUL 8 HOH *546(H2 O) HELIX 1 AA1 TYR H 31 SER H 35 5 5 HELIX 2 AA2 ARG H 90 THR H 94 5 5 HELIX 3 AA3 TYR H 104 GLY H 109 1 6 HELIX 4 AA4 SER H 168 ALA H 170 5 3 HELIX 5 AA5 PRO H 197 LEU H 201 5 5 HELIX 6 AA6 GLN L 80 PHE L 84 5 5 HELIX 7 AA7 SER L 122 LYS L 127 1 6 HELIX 8 AA8 LYS L 184 LYS L 189 1 6 SHEET 1 AA1 4 GLN H 6 SER H 10 0 SHEET 2 AA1 4 LEU H 21 SER H 28 -1 O ALA H 26 N VAL H 8 SHEET 3 AA1 4 THR H 81 MET H 86 -1 O LEU H 84 N LEU H 23 SHEET 4 AA1 4 PHE H 71 ASP H 76 -1 N THR H 72 O GLN H 85 SHEET 1 AA2 6 GLY H 13 VAL H 15 0 SHEET 2 AA2 6 THR H 119 VAL H 123 1 O THR H 122 N GLY H 13 SHEET 3 AA2 6 ALA H 95 GLN H 102 -1 N TYR H 97 O THR H 119 SHEET 4 AA2 6 ILE H 37 GLN H 42 -1 N VAL H 40 O TYR H 98 SHEET 5 AA2 6 LEU H 48 ILE H 54 -1 O GLU H 49 N ARG H 41 SHEET 6 AA2 6 THR H 61 TYR H 63 -1 O TYR H 62 N SER H 53 SHEET 1 AA3 4 GLY H 13 VAL H 15 0 SHEET 2 AA3 4 THR H 119 VAL H 123 1 O THR H 122 N GLY H 13 SHEET 3 AA3 4 ALA H 95 GLN H 102 -1 N TYR H 97 O THR H 119 SHEET 4 AA3 4 PHE H 112 TRP H 115 -1 O TYR H 114 N ARG H 101 SHEET 1 AA4 4 SER H 132 LEU H 136 0 SHEET 2 AA4 4 ALA H 148 TYR H 157 -1 O LEU H 153 N PHE H 134 SHEET 3 AA4 4 TYR H 188 VAL H 196 -1 O TYR H 188 N TYR H 157 SHEET 4 AA4 4 VAL H 175 THR H 177 -1 N HIS H 176 O VAL H 193 SHEET 1 AA5 4 SER H 132 LEU H 136 0 SHEET 2 AA5 4 ALA H 148 TYR H 157 -1 O LEU H 153 N PHE H 134 SHEET 3 AA5 4 TYR H 188 VAL H 196 -1 O TYR H 188 N TYR H 157 SHEET 4 AA5 4 VAL H 181 LEU H 182 -1 N VAL H 181 O SER H 189 SHEET 1 AA6 3 VAL H 162 TRP H 166 0 SHEET 2 AA6 3 TYR H 206 HIS H 212 -1 O ASN H 209 N SER H 165 SHEET 3 AA6 3 THR H 217 VAL H 223 -1 O VAL H 223 N TYR H 206 SHEET 1 AA7 4 MET L 5 SER L 8 0 SHEET 2 AA7 4 VAL L 20 ALA L 26 -1 O THR L 23 N SER L 8 SHEET 3 AA7 4 ASP L 71 ILE L 76 -1 O LEU L 74 N ILE L 22 SHEET 4 AA7 4 PHE L 63 SER L 68 -1 N SER L 64 O THR L 75 SHEET 1 AA8 6 SER L 11 ALA L 14 0 SHEET 2 AA8 6 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 12 SHEET 3 AA8 6 ALA L 85 GLN L 91 -1 N ALA L 85 O VAL L 105 SHEET 4 AA8 6 VAL L 34 GLN L 39 -1 N GLN L 39 O THR L 86 SHEET 5 AA8 6 LYS L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AA8 6 SER L 54 LEU L 55 -1 O SER L 54 N TYR L 50 SHEET 1 AA9 4 SER L 11 ALA L 14 0 SHEET 2 AA9 4 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 12 SHEET 3 AA9 4 ALA L 85 GLN L 91 -1 N ALA L 85 O VAL L 105 SHEET 4 AA9 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SHEET 1 AB1 4 SER L 115 PHE L 119 0 SHEET 2 AB1 4 THR L 130 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 AB1 4 TYR L 174 SER L 183 -1 O TYR L 174 N PHE L 140 SHEET 4 AB1 4 SER L 160 VAL L 164 -1 N GLN L 161 O THR L 179 SHEET 1 AB2 4 ALA L 154 LEU L 155 0 SHEET 2 AB2 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AB2 4 VAL L 192 THR L 198 -1 O GLU L 196 N GLN L 148 SHEET 4 AB2 4 VAL L 206 ASN L 211 -1 O VAL L 206 N VAL L 197 SSBOND 1 CYS H 25 CYS H 99 1555 1555 2.03 SSBOND 2 CYS H 152 CYS H 208 1555 1555 2.03 SSBOND 3 CYS L 24 CYS L 89 1555 1555 2.04 SSBOND 4 CYS L 135 CYS L 195 1555 1555 2.04 LINK O3' GTP R 1 P G R 2 1555 1555 1.60 LINK OP2 A R 11 MG MG R 101 1555 1555 2.04 LINK OP2 C R 24 NA NA R 104 1555 1555 2.52 LINK OP2 C R 52 MG MG R 102 1555 1555 1.82 LINK OP2 U R 53 MG MG R 102 1555 1555 1.85 LINK MG MG R 101 O HOH R 274 1555 1555 2.05 LINK MG MG R 101 O HOH R 290 1555 1555 1.98 LINK MG MG R 101 O HOH R 296 1555 1555 2.19 LINK MG MG R 101 O HOH R 339 1555 1555 2.05 LINK MG MG R 101 O HOH R 352 1555 1555 1.96 LINK MG MG R 102 O HOH R 224 1555 1555 1.98 LINK MG MG R 102 O HOH R 226 1555 1555 1.80 LINK MG MG R 102 O HOH R 265 1555 1555 1.99 LINK NA NA R 104 O HOH R 253 1555 1555 1.91 LINK NA NA R 104 O HOH R 323 1555 1555 2.56 LINK NA NA R 104 O HOH R 380 1555 1555 2.18 CISPEP 1 PHE H 158 PRO H 159 0 -5.27 CISPEP 2 GLU H 160 PRO H 161 0 -4.08 CISPEP 3 SER L 8 PRO L 9 0 -6.81 CISPEP 4 PHE L 95 PRO L 96 0 -1.23 CISPEP 5 TYR L 141 PRO L 142 0 3.26 CRYST1 61.609 96.992 148.255 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016231 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006745 0.00000 HETATM 1 PG GTP R 1 -22.086 27.816 -83.701 1.00108.87 P HETATM 2 O1G GTP R 1 -23.483 28.387 -83.642 1.00 91.82 O HETATM 3 O2G GTP R 1 -21.414 27.986 -82.360 1.00104.49 O1- HETATM 4 O3G GTP R 1 -22.153 26.348 -84.048 1.00106.61 O1- HETATM 5 O3B GTP R 1 -21.220 28.618 -84.852 1.00108.68 O HETATM 6 PB GTP R 1 -19.574 28.585 -84.934 1.00127.33 P HETATM 7 O1B GTP R 1 -19.127 27.183 -85.276 1.00121.13 O HETATM 8 O2B GTP R 1 -19.105 29.543 -86.003 1.00117.93 O1- HETATM 9 O3A GTP R 1 -18.937 29.024 -83.478 1.00125.08 O HETATM 10 PA GTP R 1 -17.382 29.537 -83.279 1.00139.53 P HETATM 11 O1A GTP R 1 -16.789 28.862 -82.064 1.00129.20 O HETATM 12 O2A GTP R 1 -16.581 29.173 -84.506 1.00122.10 O1- HETATM 13 O5' GTP R 1 -17.349 31.173 -83.066 1.00121.69 O HETATM 14 C5' GTP R 1 -17.779 31.978 -84.125 1.00113.71 C HETATM 15 C4' GTP R 1 -18.306 33.309 -83.602 1.00109.16 C HETATM 16 O4' GTP R 1 -19.631 33.714 -84.460 1.00106.07 O HETATM 17 C3' GTP R 1 -18.678 33.257 -82.357 1.00108.14 C HETATM 18 O3' GTP R 1 -17.557 33.656 -81.427 1.00113.81 O HETATM 19 C2' GTP R 1 -19.807 34.281 -82.294 1.00102.22 C HETATM 20 O2' GTP R 1 -19.322 35.551 -82.268 1.00 98.81 O HETATM 21 C1' GTP R 1 -20.559 33.995 -83.619 1.00 98.23 C HETATM 22 N9 GTP R 1 -21.470 32.833 -83.437 1.00 96.84 N HETATM 23 C8 GTP R 1 -21.240 31.594 -83.841 1.00101.12 C HETATM 24 N7 GTP R 1 -22.264 30.823 -83.511 1.00 88.42 N HETATM 25 C5 GTP R 1 -23.178 31.571 -82.876 1.00 83.14 C HETATM 26 C6 GTP R 1 -24.437 31.335 -82.303 1.00 81.04 C HETATM 27 O6 GTP R 1 -24.901 30.244 -82.325 1.00 74.79 O HETATM 28 N1 GTP R 1 -25.094 32.340 -81.740 1.00 72.49 N HETATM 29 C2 GTP R 1 -24.579 33.565 -81.710 1.00 82.70 C HETATM 30 N2 GTP R 1 -25.320 34.646 -81.085 1.00 75.59 N HETATM 31 N3 GTP R 1 -23.393 33.819 -82.243 1.00 77.87 N HETATM 32 C4 GTP R 1 -22.671 32.852 -82.831 1.00 84.11 C HETATM 33 H5' GTP R 1 -17.032 32.144 -84.721 1.00135.27 H HETATM 34 H5'' GTP R 1 -18.486 31.522 -84.608 1.00135.27 H HETATM 35 H4' GTP R 1 -17.637 33.965 -83.663 1.00129.82 H HETATM 36 H3' GTP R 1 -18.968 32.394 -82.128 1.00128.59 H HETATM 37 H2' GTP R 1 -20.354 34.162 -81.540 1.00121.49 H HETATM 38 HO2' GTP R 1 -19.277 35.855 -83.058 1.00117.40 H HETATM 39 H1' GTP R 1 -21.042 34.749 -83.904 1.00116.70 H HETATM 40 H8 GTP R 1 -20.477 31.306 -84.288 1.00120.17 H HETATM 41 HN1 GTP R 1 -25.873 32.195 -81.385 1.00 85.81 H HETATM 42 HN21 GTP R 1 -25.007 35.033 -80.373 1.00 89.54 H HETATM 43 HN22 GTP R 1 -26.075 34.907 -81.424 1.00 89.54 H