HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 30-NOV-21 7T0T TITLE CRYSTAL STRUCTURE OF THE BCL6 BTB DOMAIN IN COMPLEX WITH OICR-10562 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 5 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS IMMUNITY, INFLAMMATORY RESPONSE, TRANSCRIPTION REPRESSOR, KEYWDS 2 TRANSCRIPTION-TRANSCRIPTION INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.A.KUNTZ,G.G.PRIVE REVDAT 2 25-OCT-23 7T0T 1 REMARK REVDAT 1 14-DEC-22 7T0T 0 JRNL AUTH D.A.KUNTZ,G.G.PRIVE JRNL TITL CRYSTAL STRUCTURE OF THE BCL6 BTB DOMAIN IN COMPLEX WITH JRNL TITL 2 OICR-10562 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 49845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3600 - 5.2400 0.99 2644 150 0.1989 0.2556 REMARK 3 2 5.2400 - 4.1600 0.99 2586 203 0.1402 0.1850 REMARK 3 3 4.1600 - 3.6300 0.99 2636 141 0.1478 0.1562 REMARK 3 4 3.6300 - 3.3000 1.00 2635 143 0.1605 0.1978 REMARK 3 5 3.3000 - 3.0700 1.00 2620 151 0.1698 0.2109 REMARK 3 6 3.0700 - 2.8800 1.00 2600 171 0.1784 0.2297 REMARK 3 7 2.8800 - 2.7400 1.00 2655 119 0.1860 0.2244 REMARK 3 8 2.7400 - 2.6200 1.00 2655 104 0.1825 0.2431 REMARK 3 9 2.6200 - 2.5200 1.00 2628 136 0.1835 0.2485 REMARK 3 10 2.5200 - 2.4300 1.00 2641 147 0.1911 0.2174 REMARK 3 11 2.4300 - 2.3600 1.00 2611 157 0.1874 0.2470 REMARK 3 12 2.3600 - 2.2900 1.00 2647 131 0.1928 0.2412 REMARK 3 13 2.2900 - 2.2300 0.99 2563 166 0.2243 0.2603 REMARK 3 14 2.2300 - 2.1800 1.00 2654 114 0.2105 0.2734 REMARK 3 15 2.1800 - 2.1300 1.00 2660 103 0.2143 0.2166 REMARK 3 16 2.1300 - 2.0800 1.00 2623 133 0.2252 0.2604 REMARK 3 17 2.0800 - 2.0400 1.00 2633 124 0.2364 0.2895 REMARK 3 18 2.0400 - 2.0000 1.00 2610 151 0.2469 0.2872 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.209 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.259 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6452 REMARK 3 ANGLE : 0.793 8783 REMARK 3 CHIRALITY : 0.047 993 REMARK 3 PLANARITY : 0.008 1100 REMARK 3 DIHEDRAL : 18.902 2409 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7T0T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1000261395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49900 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.80600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1R29 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.25M NACL PRECIPITANT PH 4.8 ACETATE REMARK 280 AS BUFFER WITH 10% GLYCEROL, 10% DMSO AND 0.2M LISO4 IN REMARK 280 MICROBATCH., TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.27450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 129 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 ASP B 6 REMARK 465 GLU B 129 REMARK 465 GLY C 3 REMARK 465 SER C 4 REMARK 465 ALA C 5 REMARK 465 ASP C 6 REMARK 465 GLY D 3 REMARK 465 SER D 4 REMARK 465 GLN D 64 REMARK 465 LEU D 65 REMARK 465 LYS D 66 REMARK 465 GLU D 129 REMARK 465 GLY E 3 REMARK 465 SER E 4 REMARK 465 ALA E 5 REMARK 465 ASP E 6 REMARK 465 GLU E 129 REMARK 465 GLY F 3 REMARK 465 SER F 4 REMARK 465 ALA F 5 REMARK 465 ASP F 6 REMARK 465 GLU F 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 66 NZ REMARK 470 GLU A 99 OE1 OE2 REMARK 470 GLN B 8 CD OE1 NE2 REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 ARG B 67 CG CD NE CZ NH1 NH2 REMARK 470 THR C 62 CG2 REMARK 470 GLU C 99 CD OE1 OE2 REMARK 470 ASP D 6 CG OD1 OD2 REMARK 470 ARG D 67 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 68 CG OD1 ND2 REMARK 470 GLN E 8 CG CD OE1 NE2 REMARK 470 GLN E 10 CG CD OE1 NE2 REMARK 470 LYS E 66 CG CD CE NZ REMARK 470 GLU E 99 CG CD OE1 OE2 REMARK 470 GLN F 8 OE1 NE2 REMARK 470 GLU F 99 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -112.20 56.49 REMARK 500 SER B 39 -105.26 50.52 REMARK 500 GLN B 113 63.00 67.01 REMARK 500 LEU C 31 16.04 58.83 REMARK 500 ARG C 40 -14.70 82.49 REMARK 500 GLN C 113 60.25 62.19 REMARK 500 SER D 39 -115.16 53.38 REMARK 500 SER D 93 -2.08 81.73 REMARK 500 GLN D 113 65.89 62.56 REMARK 500 SER E 39 -107.36 52.70 REMARK 500 GLN E 64 -5.46 -52.22 REMARK 500 LYS E 66 77.21 -55.77 REMARK 500 GLN E 113 64.86 65.38 REMARK 500 SER F 39 -105.98 56.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE C 43 -11.44 REMARK 500 PHE C 43 -11.76 REMARK 500 ARG C 44 12.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7LWE RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-7629 REMARK 900 RELATED ID: 7LWF RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-9320 REMARK 900 RELATED ID: 7LWG RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-12694 REMARK 900 RELATED ID: 7LZQ RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-4425 REMARK 900 RELATED ID: 7LZS RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-11029 REMARK 900 RELATED ID: 7RUW RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-7859 REMARK 900 RELATED ID: 7RUX RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-8311 REMARK 900 RELATED ID: 7RUY RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-8388 REMARK 900 RELATED ID: 7RUZ RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-8445 REMARK 900 RELATED ID: 7RV0 RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-8446 REMARK 900 RELATED ID: 7RV1 RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-8826 REMARK 900 RELATED ID: 7RV2 RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-8828 REMARK 900 RELATED ID: 7RV3 RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-9124 REMARK 900 RELATED ID: 7RV4 RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-9153 REMARK 900 RELATED ID: 7RV5 RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-9287 REMARK 900 RELATED ID: 7RV6 RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-9288 REMARK 900 RELATED ID: 7RV7 RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-9322 REMARK 900 RELATED ID: 7RV8 RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-10268 REMARK 900 RELATED ID: 7RV9 RELATED DB: PDB REMARK 900 BCL6_BTB WITH OICR-10269 DBREF 7T0T A 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7T0T B 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7T0T C 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7T0T D 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7T0T E 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7T0T F 5 129 UNP P41182 BCL6_HUMAN 5 129 SEQADV 7T0T GLY A 3 UNP P41182 EXPRESSION TAG SEQADV 7T0T SER A 4 UNP P41182 EXPRESSION TAG SEQADV 7T0T GLN A 8 UNP P41182 CYS 8 ENGINEERED MUTATION SEQADV 7T0T ARG A 67 UNP P41182 CYS 67 ENGINEERED MUTATION SEQADV 7T0T ASN A 84 UNP P41182 CYS 84 ENGINEERED MUTATION SEQADV 7T0T GLY B 3 UNP P41182 EXPRESSION TAG SEQADV 7T0T SER B 4 UNP P41182 EXPRESSION TAG SEQADV 7T0T GLN B 8 UNP P41182 CYS 8 ENGINEERED MUTATION SEQADV 7T0T ARG B 67 UNP P41182 CYS 67 ENGINEERED MUTATION SEQADV 7T0T ASN B 84 UNP P41182 CYS 84 ENGINEERED MUTATION SEQADV 7T0T GLY C 3 UNP P41182 EXPRESSION TAG SEQADV 7T0T SER C 4 UNP P41182 EXPRESSION TAG SEQADV 7T0T GLN C 8 UNP P41182 CYS 8 ENGINEERED MUTATION SEQADV 7T0T ARG C 67 UNP P41182 CYS 67 ENGINEERED MUTATION SEQADV 7T0T ASN C 84 UNP P41182 CYS 84 ENGINEERED MUTATION SEQADV 7T0T GLY D 3 UNP P41182 EXPRESSION TAG SEQADV 7T0T SER D 4 UNP P41182 EXPRESSION TAG SEQADV 7T0T GLN D 8 UNP P41182 CYS 8 ENGINEERED MUTATION SEQADV 7T0T ARG D 67 UNP P41182 CYS 67 ENGINEERED MUTATION SEQADV 7T0T ASN D 84 UNP P41182 CYS 84 ENGINEERED MUTATION SEQADV 7T0T GLY E 3 UNP P41182 EXPRESSION TAG SEQADV 7T0T SER E 4 UNP P41182 EXPRESSION TAG SEQADV 7T0T GLN E 8 UNP P41182 CYS 8 ENGINEERED MUTATION SEQADV 7T0T ARG E 67 UNP P41182 CYS 67 ENGINEERED MUTATION SEQADV 7T0T ASN E 84 UNP P41182 CYS 84 ENGINEERED MUTATION SEQADV 7T0T GLY F 3 UNP P41182 EXPRESSION TAG SEQADV 7T0T SER F 4 UNP P41182 EXPRESSION TAG SEQADV 7T0T GLN F 8 UNP P41182 CYS 8 ENGINEERED MUTATION SEQADV 7T0T ARG F 67 UNP P41182 CYS 67 ENGINEERED MUTATION SEQADV 7T0T ASN F 84 UNP P41182 CYS 84 ENGINEERED MUTATION SEQRES 1 A 127 GLY SER ALA ASP SER GLN ILE GLN PHE THR ARG HIS ALA SEQRES 2 A 127 SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER ARG SEQRES 3 A 127 ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG GLU SEQRES 4 A 127 GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SER SEQRES 5 A 127 GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS ARG SEQRES 6 A 127 ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN PRO SEQRES 7 A 127 GLU GLY PHE ASN ILE LEU LEU ASP PHE MET TYR THR SER SEQRES 8 A 127 ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL MET SEQRES 9 A 127 ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL ASP SEQRES 10 A 127 THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 B 127 GLY SER ALA ASP SER GLN ILE GLN PHE THR ARG HIS ALA SEQRES 2 B 127 SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER ARG SEQRES 3 B 127 ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG GLU SEQRES 4 B 127 GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SER SEQRES 5 B 127 GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS ARG SEQRES 6 B 127 ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN PRO SEQRES 7 B 127 GLU GLY PHE ASN ILE LEU LEU ASP PHE MET TYR THR SER SEQRES 8 B 127 ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL MET SEQRES 9 B 127 ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL ASP SEQRES 10 B 127 THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 C 127 GLY SER ALA ASP SER GLN ILE GLN PHE THR ARG HIS ALA SEQRES 2 C 127 SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER ARG SEQRES 3 C 127 ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG GLU SEQRES 4 C 127 GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SER SEQRES 5 C 127 GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS ARG SEQRES 6 C 127 ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN PRO SEQRES 7 C 127 GLU GLY PHE ASN ILE LEU LEU ASP PHE MET TYR THR SER SEQRES 8 C 127 ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL MET SEQRES 9 C 127 ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL ASP SEQRES 10 C 127 THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 D 127 GLY SER ALA ASP SER GLN ILE GLN PHE THR ARG HIS ALA SEQRES 2 D 127 SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER ARG SEQRES 3 D 127 ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG GLU SEQRES 4 D 127 GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SER SEQRES 5 D 127 GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS ARG SEQRES 6 D 127 ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN PRO SEQRES 7 D 127 GLU GLY PHE ASN ILE LEU LEU ASP PHE MET TYR THR SER SEQRES 8 D 127 ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL MET SEQRES 9 D 127 ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL ASP SEQRES 10 D 127 THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 E 127 GLY SER ALA ASP SER GLN ILE GLN PHE THR ARG HIS ALA SEQRES 2 E 127 SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER ARG SEQRES 3 E 127 ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG GLU SEQRES 4 E 127 GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SER SEQRES 5 E 127 GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS ARG SEQRES 6 E 127 ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN PRO SEQRES 7 E 127 GLU GLY PHE ASN ILE LEU LEU ASP PHE MET TYR THR SER SEQRES 8 E 127 ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL MET SEQRES 9 E 127 ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL ASP SEQRES 10 E 127 THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 F 127 GLY SER ALA ASP SER GLN ILE GLN PHE THR ARG HIS ALA SEQRES 2 F 127 SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER ARG SEQRES 3 F 127 ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG GLU SEQRES 4 F 127 GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SER SEQRES 5 F 127 GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS ARG SEQRES 6 F 127 ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN PRO SEQRES 7 F 127 GLU GLY PHE ASN ILE LEU LEU ASP PHE MET TYR THR SER SEQRES 8 F 127 ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL MET SEQRES 9 F 127 ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL ASP SEQRES 10 F 127 THR CYS ARG LYS PHE ILE LYS ALA SER GLU HET DMS A 201 10 HET E1I A 202 44 HET E1I B 201 44 HET E1I C 201 44 HET E1I D 201 44 HET E1I E 201 44 HET DMS E 202 10 HET E1I F 201 44 HETNAM DMS DIMETHYL SULFOXIDE HETNAM E1I N-[5-CHLORO-2-(MORPHOLIN-4-YL)PYRIDIN-4-YL]-2-[5-(3- HETNAM 2 E1I CYANO-4-HYDROXY-5-METHYLPHENYL)-3-METHYL-2-(1-METHYL- HETNAM 3 E1I 1H-PYRAZOL-4-YL)-4-OXO-3,4-DIHYDRO-7H-PYRROLO[2,3- HETNAM 4 E1I D]PYRIMIDIN-7-YL]ACETAMIDE FORMUL 7 DMS 2(C2 H6 O S) FORMUL 8 E1I 6(C30 H28 CL N9 O4) FORMUL 15 HOH *368(H2 O) HELIX 1 AA1 ARG A 13 ASP A 29 1 17 HELIX 2 AA2 HIS A 46 SER A 54 1 9 HELIX 3 AA3 SER A 54 THR A 62 1 9 HELIX 4 AA4 ASP A 63 LEU A 69 1 7 HELIX 5 AA5 ASN A 79 SER A 93 1 15 HELIX 6 AA6 ASN A 101 GLN A 113 1 13 HELIX 7 AA7 MET A 114 SER A 128 1 15 HELIX 8 AA8 ARG B 13 ARG B 28 1 16 HELIX 9 AA9 HIS B 46 SER B 54 1 9 HELIX 10 AB1 SER B 54 PHE B 61 1 8 HELIX 11 AB2 ASN B 79 SER B 93 1 15 HELIX 12 AB3 ASN B 101 GLN B 113 1 13 HELIX 13 AB4 MET B 114 SER B 128 1 15 HELIX 14 AB5 ARG C 13 ASP C 29 1 17 HELIX 15 AB6 HIS C 46 SER C 54 1 9 HELIX 16 AB7 SER C 54 ASP C 63 1 10 HELIX 17 AB8 LEU C 65 LEU C 69 5 5 HELIX 18 AB9 ASN C 79 SER C 93 1 15 HELIX 19 AC1 ASN C 101 GLN C 113 1 13 HELIX 20 AC2 MET C 114 GLU C 129 1 16 HELIX 21 AC3 ARG D 13 ARG D 28 1 16 HELIX 22 AC4 HIS D 46 SER D 54 1 9 HELIX 23 AC5 SER D 54 THR D 62 1 9 HELIX 24 AC6 ASN D 79 SER D 93 1 15 HELIX 25 AC7 ASN D 101 GLN D 113 1 13 HELIX 26 AC8 MET D 114 SER D 128 1 15 HELIX 27 AC9 ARG E 13 ARG E 28 1 16 HELIX 28 AD1 HIS E 46 SER E 54 1 9 HELIX 29 AD2 SER E 54 ASP E 63 1 10 HELIX 30 AD3 ASN E 79 SER E 93 1 15 HELIX 31 AD4 ASN E 101 GLN E 113 1 13 HELIX 32 AD5 MET E 114 SER E 128 1 15 HELIX 33 AD6 ARG F 13 ARG F 28 1 16 HELIX 34 AD7 HIS F 46 SER F 54 1 9 HELIX 35 AD8 SER F 54 ASP F 63 1 10 HELIX 36 AD9 LEU F 65 LEU F 69 5 5 HELIX 37 AE1 ASN F 79 SER F 93 1 15 HELIX 38 AE2 ASN F 101 GLN F 113 1 13 HELIX 39 AE3 MET F 114 SER F 128 1 15 SHEET 1 AA1 4 ARG B 94 LEU B 95 0 SHEET 2 AA1 4 SER A 7 PHE A 11 -1 N ILE A 9 O LEU B 95 SHEET 3 AA1 4 SER D 7 PHE D 11 -1 O GLN D 10 N GLN A 8 SHEET 4 AA1 4 ARG C 94 LEU C 95 -1 N LEU C 95 O ILE D 9 SHEET 1 AA2 3 GLU A 41 ALA A 45 0 SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N ILE A 36 O PHE A 43 SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37 SHEET 1 AA3 2 ARG A 94 LEU A 95 0 SHEET 2 AA3 2 ILE B 9 GLN B 10 -1 O ILE B 9 N LEU A 95 SHEET 1 AA4 3 GLU B 41 ALA B 45 0 SHEET 2 AA4 3 VAL B 34 VAL B 38 -1 N ILE B 36 O PHE B 43 SHEET 3 AA4 3 VAL B 71 ASN B 73 1 O ILE B 72 N VAL B 37 SHEET 1 AA5 2 ILE C 9 GLN C 10 0 SHEET 2 AA5 2 ARG D 94 LEU D 95 -1 O LEU D 95 N ILE C 9 SHEET 1 AA6 3 GLU C 41 ALA C 45 0 SHEET 2 AA6 3 VAL C 34 VAL C 38 -1 N ILE C 36 O PHE C 43 SHEET 3 AA6 3 VAL C 71 ASN C 73 1 O ILE C 72 N VAL C 37 SHEET 1 AA7 3 GLU D 41 ALA D 45 0 SHEET 2 AA7 3 VAL D 34 VAL D 38 -1 N ILE D 36 O PHE D 43 SHEET 3 AA7 3 VAL D 71 ASN D 73 1 O ILE D 72 N VAL D 37 SHEET 1 AA8 2 ILE E 9 GLN E 10 0 SHEET 2 AA8 2 ARG F 94 LEU F 95 -1 O LEU F 95 N ILE E 9 SHEET 1 AA9 3 GLU E 41 ALA E 45 0 SHEET 2 AA9 3 VAL E 34 VAL E 38 -1 N ILE E 36 O PHE E 43 SHEET 3 AA9 3 VAL E 71 ASN E 73 1 O ILE E 72 N VAL E 37 SHEET 1 AB1 2 ARG E 94 ASN E 96 0 SHEET 2 AB1 2 GLN F 8 GLN F 10 -1 O ILE F 9 N LEU E 95 SHEET 1 AB2 3 GLU F 41 ALA F 45 0 SHEET 2 AB2 3 VAL F 34 VAL F 38 -1 N ILE F 36 O PHE F 43 SHEET 3 AB2 3 VAL F 71 ASN F 73 1 O ILE F 72 N VAL F 37 CRYST1 62.592 102.549 65.028 90.00 115.48 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015976 0.000000 0.007614 0.00000 SCALE2 0.000000 0.009751 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017035 0.00000 CONECT12160121611216212163 CONECT1216112160 CONECT1216212160121641216512166 CONECT1216312160121671216812169 CONECT1216412162 CONECT1216512162 CONECT1216612162 CONECT1216712163 CONECT1216812163 CONECT1216912163 CONECT1217012172 CONECT12171121761217712188 CONECT12172121701217312189 CONECT12173121721217412209 CONECT12174121731217512188 CONECT12175121741217612194 CONECT121761217112175 CONECT121771217112178 CONECT12178121771220212210 CONECT12179121801218312202 CONECT121801217912181 CONECT12181121801220312204 CONECT121821218312203 CONECT12183121791218212213 CONECT121841218512204 CONECT121851218412211 CONECT121861218712211 CONECT121871218612204 CONECT12188121711217412205 CONECT12189121721219012205 CONECT12190121891219112193 CONECT121911219012206 CONECT1219212207 CONECT121931219012207 CONECT12194121751219512200 CONECT121951219412196 CONECT12196121951219712198 CONECT1219712196 CONECT12198121961219912212 CONECT12199121981220012201 CONECT122001219412199 CONECT122011219912208 CONECT122021217812179 CONECT122031218112182 CONECT12204121811218412187 CONECT122051218812189 CONECT122061219112207 CONECT12207121921219312206 CONECT1220812201 CONECT1220912173 CONECT1221012178 CONECT122111218512186 CONECT1221212198 CONECT1221312183 CONECT1221412216 CONECT12215122201222112232 CONECT12216122141221712233 CONECT12217122161221812253 CONECT12218122171221912232 CONECT12219122181222012238 CONECT122201221512219 CONECT122211221512222 CONECT12222122211224612254 CONECT12223122241222712246 CONECT122241222312225 CONECT12225122241224712248 CONECT122261222712247 CONECT12227122231222612257 CONECT122281222912248 CONECT122291222812255 CONECT122301223112255 CONECT122311223012248 CONECT12232122151221812249 CONECT12233122161223412249 CONECT12234122331223512237 CONECT122351223412250 CONECT1223612251 CONECT122371223412251 CONECT12238122191223912244 CONECT122391223812240 CONECT12240122391224112242 CONECT1224112240 CONECT12242122401224312256 CONECT12243122421224412245 CONECT122441223812243 CONECT122451224312252 CONECT122461222212223 CONECT122471222512226 CONECT12248122251222812231 CONECT122491223212233 CONECT122501223512251 CONECT12251122361223712250 CONECT1225212245 CONECT1225312217 CONECT1225412222 CONECT122551222912230 CONECT1225612242 CONECT1225712227 CONECT1225812260 CONECT12259122641226512276 CONECT12260122581226112277 CONECT12261122601226212297 CONECT12262122611226312276 CONECT12263122621226412282 CONECT122641225912263 CONECT122651225912266 CONECT12266122651229012298 CONECT12267122681227112290 CONECT122681226712269 CONECT12269122681229112292 CONECT122701227112291 CONECT12271122671227012301 CONECT122721227312292 CONECT122731227212299 CONECT122741227512299 CONECT122751227412292 CONECT12276122591226212293 CONECT12277122601227812293 CONECT12278122771227912281 CONECT122791227812294 CONECT1228012295 CONECT122811227812295 CONECT12282122631228312288 CONECT122831228212284 CONECT12284122831228512286 CONECT1228512284 CONECT12286122841228712300 CONECT12287122861228812289 CONECT122881228212287 CONECT122891228712296 CONECT122901226612267 CONECT122911226912270 CONECT12292122691227212275 CONECT122931227612277 CONECT122941227912295 CONECT12295122801228112294 CONECT1229612289 CONECT1229712261 CONECT1229812266 CONECT122991227312274 CONECT1230012286 CONECT1230112271 CONECT1230212304 CONECT12303123081230912320 CONECT12304123021230512321 CONECT12305123041230612341 CONECT12306123051230712320 CONECT12307123061230812326 CONECT123081230312307 CONECT123091230312310 CONECT12310123091233412342 CONECT12311123121231512334 CONECT123121231112313 CONECT12313123121233512336 CONECT123141231512335 CONECT12315123111231412345 CONECT123161231712336 CONECT123171231612343 CONECT123181231912343 CONECT123191231812336 CONECT12320123031230612337 CONECT12321123041232212337 CONECT12322123211232312325 CONECT123231232212338 CONECT1232412339 CONECT123251232212339 CONECT12326123071232712332 CONECT123271232612328 CONECT12328123271232912330 CONECT1232912328 CONECT12330123281233112344 CONECT12331123301233212333 CONECT123321232612331 CONECT123331233112340 CONECT123341231012311 CONECT123351231312314 CONECT12336123131231612319 CONECT123371232012321 CONECT123381232312339 CONECT12339123241232512338 CONECT1234012333 CONECT1234112305 CONECT1234212310 CONECT123431231712318 CONECT1234412330 CONECT1234512315 CONECT1234612348 CONECT12347123521235312364 CONECT12348123461234912365 CONECT12349123481235012385 CONECT12350123491235112364 CONECT12351123501235212370 CONECT123521234712351 CONECT123531234712354 CONECT12354123531237812386 CONECT12355123561235912378 CONECT123561235512357 CONECT12357123561237912380 CONECT123581235912379 CONECT12359123551235812389 CONECT123601236112380 CONECT123611236012387 CONECT123621236312387 CONECT123631236212380 CONECT12364123471235012381 CONECT12365123481236612381 CONECT12366123651236712369 CONECT123671236612382 CONECT1236812383 CONECT123691236612383 CONECT12370123511237112376 CONECT123711237012372 CONECT12372123711237312374 CONECT1237312372 CONECT12374123721237512388 CONECT12375123741237612377 CONECT123761237012375 CONECT123771237512384 CONECT123781235412355 CONECT123791235712358 CONECT12380123571236012363 CONECT123811236412365 CONECT123821236712383 CONECT12383123681236912382 CONECT1238412377 CONECT1238512349 CONECT1238612354 CONECT123871236112362 CONECT1238812374 CONECT1238912359 CONECT12390123911239212393 CONECT1239112390 CONECT1239212390123941239512396 CONECT1239312390123971239812399 CONECT1239412392 CONECT1239512392 CONECT1239612392 CONECT1239712393 CONECT1239812393 CONECT1239912393 CONECT1240012402 CONECT12401124061240712418 CONECT12402124001240312419 CONECT12403124021240412439 CONECT12404124031240512418 CONECT12405124041240612424 CONECT124061240112405 CONECT124071240112408 CONECT12408124071243212440 CONECT12409124101241312432 CONECT124101240912411 CONECT12411124101243312434 CONECT124121241312433 CONECT12413124091241212443 CONECT124141241512434 CONECT124151241412441 CONECT124161241712441 CONECT124171241612434 CONECT12418124011240412435 CONECT12419124021242012435 CONECT12420124191242112423 CONECT124211242012436 CONECT1242212437 CONECT124231242012437 CONECT12424124051242512430 CONECT124251242412426 CONECT12426124251242712428 CONECT1242712426 CONECT12428124261242912442 CONECT12429124281243012431 CONECT124301242412429 CONECT124311242912438 CONECT124321240812409 CONECT124331241112412 CONECT12434124111241412417 CONECT124351241812419 CONECT124361242112437 CONECT12437124221242312436 CONECT1243812431 CONECT1243912403 CONECT1244012408 CONECT124411241512416 CONECT1244212428 CONECT1244312413 MASTER 371 0 8 39 30 0 0 6 6500 6 284 60 END