HEADER TRANSFERASE/TRANSFERASE INHIBITOR 01-DEC-21 7T1H TITLE CRYSTAL STRUCTURE OF CAB1 PANTOTHENATE KINASE FROM SACCHAROMYCES TITLE 2 CEREVISIAE IN COMPLEX WITH COMPOUND YU281445 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTOTHENATE KINASE CAB1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COENZYME A BIOSYNTHESIS PROTEIN 1,PANTOTHENIC ACID KINASE COMPND 5 CAB1; COMPND 6 EC: 2.7.1.33; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 STRAIN: ATCC 204508 / S288C; SOURCE 5 ATCC: 204508; SOURCE 6 GENE: CAB1, YDR531W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BG1861 KEYWDS KINASE, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.GIHAZ,C.BEN MAMOUN REVDAT 4 18-OCT-23 7T1H 1 REMARK REVDAT 3 16-NOV-22 7T1H 1 JRNL REVDAT 2 12-OCT-22 7T1H 1 JRNL REVDAT 1 05-OCT-22 7T1H 0 JRNL AUTH S.GIHAZ,P.GAREISS,J.Y.CHOI,I.RENARD,A.C.PAL,Y.SUROVSTEVA, JRNL AUTH 2 J.E.CHIU,J.THEKKINIATH,M.PLUMMER,W.HUNGERFORD, JRNL AUTH 3 M.L.MONTGOMERY,A.HOSFORD,E.M.ADAMS,J.D.LIGHTFOOT,D.FOX 3RD, JRNL AUTH 4 K.K.OJO,B.L.STAKER,K.FULLER,C.BEN MAMOUN JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURE AND CHEMICAL SCREENING JRNL TITL 2 REVEAL PANTOTHENATE KINASE AS A NEW TARGET FOR ANTIFUNGAL JRNL TITL 3 DEVELOPMENT. JRNL REF STRUCTURE V. 30 1494 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 36167065 JRNL DOI 10.1016/J.STR.2022.09.001 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 46068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2332 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3365 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5121 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.09000 REMARK 3 B22 (A**2) : -1.64000 REMARK 3 B33 (A**2) : 1.13000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : -0.66000 REMARK 3 B23 (A**2) : 1.15000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.350 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5334 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4858 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7232 ; 1.504 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11178 ; 1.344 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 682 ; 6.544 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 254 ;35.221 ;24.173 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 855 ;13.670 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.999 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 709 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6210 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1282 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7T1H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1000261498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46068 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 66.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6UJ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.18 M SODIUM FLUORIDE, 20% W/V PEG REMARK 280 3350, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ARG A 3 REMARK 465 ILE A 4 REMARK 465 THR A 5 REMARK 465 ASN A 225 REMARK 465 LYS A 226 REMARK 465 ASN A 244 REMARK 465 ARG A 245 REMARK 465 MET A 246 REMARK 465 THR A 247 REMARK 465 SER A 248 REMARK 465 ASN A 249 REMARK 465 LYS A 250 REMARK 465 SER A 251 REMARK 465 LEU A 252 REMARK 465 GLU A 253 REMARK 465 ASN A 254 REMARK 465 ASN A 255 REMARK 465 THR A 362 REMARK 465 LYS A 363 REMARK 465 LYS A 364 REMARK 465 THR A 365 REMARK 465 SER A 366 REMARK 465 THR A 367 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ARG B 3 REMARK 465 ILE B 4 REMARK 465 GLY B 141 REMARK 465 THR B 142 REMARK 465 MET B 143 REMARK 465 ASP B 144 REMARK 465 SER B 145 REMARK 465 LYS B 146 REMARK 465 THR B 222 REMARK 465 ASP B 223 REMARK 465 TYR B 224 REMARK 465 ASN B 225 REMARK 465 LYS B 226 REMARK 465 ILE B 227 REMARK 465 GLY B 228 REMARK 465 LEU B 229 REMARK 465 ASN B 244 REMARK 465 ARG B 245 REMARK 465 MET B 246 REMARK 465 THR B 247 REMARK 465 SER B 248 REMARK 465 ASN B 249 REMARK 465 LYS B 250 REMARK 465 SER B 251 REMARK 465 LEU B 252 REMARK 465 GLU B 253 REMARK 465 ASN B 254 REMARK 465 ASN B 255 REMARK 465 GLU B 256 REMARK 465 ASN B 257 REMARK 465 LYS B 258 REMARK 465 LEU B 259 REMARK 465 ARG B 358 REMARK 465 HIS B 359 REMARK 465 SER B 360 REMARK 465 SER B 361 REMARK 465 THR B 362 REMARK 465 LYS B 363 REMARK 465 LYS B 364 REMARK 465 THR B 365 REMARK 465 SER B 366 REMARK 465 THR B 367 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 50 CG CD OE1 OE2 REMARK 470 PHE A 84 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 142 OG1 CG2 REMARK 470 ASP A 144 CG OD1 OD2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 GLN A 195 CG CD OE1 NE2 REMARK 470 TYR A 220 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 227 CG1 CG2 CD1 REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 GLU A 256 CG CD OE1 OE2 REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 MET A 273 CG SD CE REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 ASP B 53 CG OD1 OD2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 ARG B 72 CD NE CZ NH1 NH2 REMARK 470 ARG B 134 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 264 CG CD OE1 OE2 REMARK 470 GLU B 267 CG CD OE1 OE2 REMARK 470 LYS B 268 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 92 OG SER A 335 1565 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 145 -92.84 80.92 REMARK 500 THR A 222 -177.62 178.55 REMARK 500 LYS B 51 61.57 74.16 REMARK 500 PHE B 84 -63.25 -98.82 REMARK 500 TYR B 220 -66.82 -97.56 REMARK 500 SER B 262 -9.19 -140.06 REMARK 500 ILE B 266 45.07 -66.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6UJ5 RELATED DB: PDB REMARK 900 RELATED ID: 7T1G RELATED DB: PDB REMARK 900 RELATED ID: 7T1I RELATED DB: PDB DBREF 7T1H A 1 367 UNP Q04430 PANK_YEAST 1 367 DBREF 7T1H B 1 367 UNP Q04430 PANK_YEAST 1 367 SEQADV 7T1H MET A -7 UNP Q04430 INITIATING METHIONINE SEQADV 7T1H ALA A -6 UNP Q04430 EXPRESSION TAG SEQADV 7T1H HIS A -5 UNP Q04430 EXPRESSION TAG SEQADV 7T1H HIS A -4 UNP Q04430 EXPRESSION TAG SEQADV 7T1H HIS A -3 UNP Q04430 EXPRESSION TAG SEQADV 7T1H HIS A -2 UNP Q04430 EXPRESSION TAG SEQADV 7T1H HIS A -1 UNP Q04430 EXPRESSION TAG SEQADV 7T1H HIS A 0 UNP Q04430 EXPRESSION TAG SEQADV 7T1H MET B -7 UNP Q04430 INITIATING METHIONINE SEQADV 7T1H ALA B -6 UNP Q04430 EXPRESSION TAG SEQADV 7T1H HIS B -5 UNP Q04430 EXPRESSION TAG SEQADV 7T1H HIS B -4 UNP Q04430 EXPRESSION TAG SEQADV 7T1H HIS B -3 UNP Q04430 EXPRESSION TAG SEQADV 7T1H HIS B -2 UNP Q04430 EXPRESSION TAG SEQADV 7T1H HIS B -1 UNP Q04430 EXPRESSION TAG SEQADV 7T1H HIS B 0 UNP Q04430 EXPRESSION TAG SEQRES 1 A 375 MET ALA HIS HIS HIS HIS HIS HIS MET PRO ARG ILE THR SEQRES 2 A 375 GLN GLU ILE SER TYR ASN CYS ASP TYR GLY ASP ASN THR SEQRES 3 A 375 PHE ASN LEU ALA ILE ASP ILE GLY GLY THR LEU ALA LYS SEQRES 4 A 375 VAL VAL PHE SER PRO ILE HIS SER ASN ARG LEU MET PHE SEQRES 5 A 375 TYR THR ILE GLU THR GLU LYS ILE ASP LYS PHE MET GLU SEQRES 6 A 375 LEU LEU HIS SER ILE ILE LYS GLU HIS ASN ASN GLY CYS SEQRES 7 A 375 TYR ARG MET THR HIS ILE ILE ALA THR GLY GLY GLY ALA SEQRES 8 A 375 PHE LYS PHE TYR ASP LEU LEU TYR GLU ASN PHE PRO GLN SEQRES 9 A 375 ILE LYS GLY ILE SER ARG PHE GLU GLU MET GLU GLY LEU SEQRES 10 A 375 ILE HIS GLY LEU ASP PHE PHE ILE HIS GLU ILE PRO ASP SEQRES 11 A 375 GLU VAL PHE THR TYR ASN ASP GLN ASP GLY GLU ARG ILE SEQRES 12 A 375 ILE PRO THR SER SER GLY THR MET ASP SER LYS ALA ILE SEQRES 13 A 375 TYR PRO TYR LEU LEU VAL ASN ILE GLY SER GLY VAL SER SEQRES 14 A 375 ILE LEU LYS VAL THR GLU PRO ASN ASN PHE SER ARG VAL SEQRES 15 A 375 GLY GLY SER SER LEU GLY GLY GLY THR LEU TRP GLY LEU SEQRES 16 A 375 LEU SER LEU ILE THR GLY ALA GLN THR TYR ASP GLN MET SEQRES 17 A 375 LEU ASP TRP ALA GLN GLU GLY ASP ASN SER SER VAL ASP SEQRES 18 A 375 MET LEU VAL GLY ASP ILE TYR GLY THR ASP TYR ASN LYS SEQRES 19 A 375 ILE GLY LEU LYS SER SER ALA ILE ALA SER SER PHE GLY SEQRES 20 A 375 LYS VAL PHE GLN ASN ARG MET THR SER ASN LYS SER LEU SEQRES 21 A 375 GLU ASN ASN GLU ASN LYS LEU TYR SER SER HIS GLU SER SEQRES 22 A 375 ILE GLU LYS ASN ASN GLY GLN MET PHE LYS ASN PRO ASP SEQRES 23 A 375 ILE CYS LYS SER LEU LEU PHE ALA ILE SER ASN ASN ILE SEQRES 24 A 375 GLY GLN ILE ALA TYR LEU GLN ALA LYS ILE ASN ASN ILE SEQRES 25 A 375 GLN ASN ILE TYR PHE GLY GLY SER TYR THR ARG GLY HIS SEQRES 26 A 375 LEU THR THR MET ASN THR LEU SER TYR ALA ILE ASN PHE SEQRES 27 A 375 TRP SER GLN GLY SER LYS GLN ALA PHE PHE LEU LYS HIS SEQRES 28 A 375 GLU GLY TYR LEU GLY ALA MET GLY ALA PHE LEU SER ALA SEQRES 29 A 375 SER ARG HIS SER SER THR LYS LYS THR SER THR SEQRES 1 B 375 MET ALA HIS HIS HIS HIS HIS HIS MET PRO ARG ILE THR SEQRES 2 B 375 GLN GLU ILE SER TYR ASN CYS ASP TYR GLY ASP ASN THR SEQRES 3 B 375 PHE ASN LEU ALA ILE ASP ILE GLY GLY THR LEU ALA LYS SEQRES 4 B 375 VAL VAL PHE SER PRO ILE HIS SER ASN ARG LEU MET PHE SEQRES 5 B 375 TYR THR ILE GLU THR GLU LYS ILE ASP LYS PHE MET GLU SEQRES 6 B 375 LEU LEU HIS SER ILE ILE LYS GLU HIS ASN ASN GLY CYS SEQRES 7 B 375 TYR ARG MET THR HIS ILE ILE ALA THR GLY GLY GLY ALA SEQRES 8 B 375 PHE LYS PHE TYR ASP LEU LEU TYR GLU ASN PHE PRO GLN SEQRES 9 B 375 ILE LYS GLY ILE SER ARG PHE GLU GLU MET GLU GLY LEU SEQRES 10 B 375 ILE HIS GLY LEU ASP PHE PHE ILE HIS GLU ILE PRO ASP SEQRES 11 B 375 GLU VAL PHE THR TYR ASN ASP GLN ASP GLY GLU ARG ILE SEQRES 12 B 375 ILE PRO THR SER SER GLY THR MET ASP SER LYS ALA ILE SEQRES 13 B 375 TYR PRO TYR LEU LEU VAL ASN ILE GLY SER GLY VAL SER SEQRES 14 B 375 ILE LEU LYS VAL THR GLU PRO ASN ASN PHE SER ARG VAL SEQRES 15 B 375 GLY GLY SER SER LEU GLY GLY GLY THR LEU TRP GLY LEU SEQRES 16 B 375 LEU SER LEU ILE THR GLY ALA GLN THR TYR ASP GLN MET SEQRES 17 B 375 LEU ASP TRP ALA GLN GLU GLY ASP ASN SER SER VAL ASP SEQRES 18 B 375 MET LEU VAL GLY ASP ILE TYR GLY THR ASP TYR ASN LYS SEQRES 19 B 375 ILE GLY LEU LYS SER SER ALA ILE ALA SER SER PHE GLY SEQRES 20 B 375 LYS VAL PHE GLN ASN ARG MET THR SER ASN LYS SER LEU SEQRES 21 B 375 GLU ASN ASN GLU ASN LYS LEU TYR SER SER HIS GLU SER SEQRES 22 B 375 ILE GLU LYS ASN ASN GLY GLN MET PHE LYS ASN PRO ASP SEQRES 23 B 375 ILE CYS LYS SER LEU LEU PHE ALA ILE SER ASN ASN ILE SEQRES 24 B 375 GLY GLN ILE ALA TYR LEU GLN ALA LYS ILE ASN ASN ILE SEQRES 25 B 375 GLN ASN ILE TYR PHE GLY GLY SER TYR THR ARG GLY HIS SEQRES 26 B 375 LEU THR THR MET ASN THR LEU SER TYR ALA ILE ASN PHE SEQRES 27 B 375 TRP SER GLN GLY SER LYS GLN ALA PHE PHE LEU LYS HIS SEQRES 28 B 375 GLU GLY TYR LEU GLY ALA MET GLY ALA PHE LEU SER ALA SEQRES 29 B 375 SER ARG HIS SER SER THR LYS LYS THR SER THR HET E5B A 401 29 HET GOL B 401 6 HETNAM E5B (8R)-2-{[(4-TERT-BUTYLPHENYL)METHYL]AMINO}-5- HETNAM 2 E5B [(MORPHOLIN-4-YL)METHYL][1,2,4]TRIAZOLO[1,5- HETNAM 3 E5B A]PYRIMIDIN-7(4H)-ONE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 E5B C21 H28 N6 O2 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *229(H2 O) HELIX 1 AA1 LYS A 51 ASN A 67 1 17 HELIX 2 AA2 CYS A 70 ARG A 72 5 3 HELIX 3 AA3 GLY A 80 PHE A 84 5 5 HELIX 4 AA4 PHE A 86 PHE A 94 1 9 HELIX 5 AA5 GLU A 104 ILE A 120 1 17 HELIX 6 AA6 GLY A 180 GLY A 193 1 14 HELIX 7 AA7 THR A 196 GLU A 206 1 11 HELIX 8 AA8 ASP A 208 VAL A 212 5 5 HELIX 9 AA9 VAL A 216 GLY A 221 1 6 HELIX 10 AB1 SER A 262 GLY A 271 1 10 HELIX 11 AB2 LYS A 275 ASN A 302 1 28 HELIX 12 AB3 HIS A 317 SER A 332 1 16 HELIX 13 AB4 HIS A 343 GLY A 345 5 3 HELIX 14 AB5 TYR A 346 SER A 361 1 16 HELIX 15 AB6 LYS B 51 ASN B 67 1 17 HELIX 16 AB7 CYS B 70 ARG B 72 5 3 HELIX 17 AB8 GLY B 81 PHE B 86 1 6 HELIX 18 AB9 PHE B 86 PHE B 94 1 9 HELIX 19 AC1 GLU B 104 ILE B 120 1 17 HELIX 20 AC2 GLY B 180 GLY B 193 1 14 HELIX 21 AC3 THR B 196 GLY B 207 1 12 HELIX 22 AC4 ASP B 208 VAL B 212 5 5 HELIX 23 AC5 VAL B 216 TYR B 220 1 5 HELIX 24 AC6 ILE B 266 GLY B 271 1 6 HELIX 25 AC7 ASN B 276 ASN B 302 1 27 HELIX 26 AC8 HIS B 317 GLN B 333 1 17 HELIX 27 AC9 HIS B 343 GLY B 345 5 3 HELIX 28 AD1 TYR B 346 ALA B 356 1 11 SHEET 1 AA1 6 GLU A 7 SER A 9 0 SHEET 2 AA1 6 ARG A 41 GLU A 48 -1 O LEU A 42 N ILE A 8 SHEET 3 AA1 6 LEU A 29 PHE A 34 -1 N VAL A 32 O TYR A 45 SHEET 4 AA1 6 PHE A 19 ILE A 25 -1 N ASP A 24 O LYS A 31 SHEET 5 AA1 6 THR A 74 THR A 79 1 O HIS A 75 N LEU A 21 SHEET 6 AA1 6 GLY A 99 ARG A 102 1 O SER A 101 N ALA A 78 SHEET 1 AA2 7 GLY A 132 ILE A 135 0 SHEET 2 AA2 7 VAL A 124 ASN A 128 -1 N THR A 126 O ARG A 134 SHEET 3 AA2 7 GLN A 337 LEU A 341 -1 O PHE A 340 N PHE A 125 SHEET 4 AA2 7 ASN A 306 GLY A 311 1 N ILE A 307 O PHE A 339 SHEET 5 AA2 7 TYR A 151 ILE A 156 1 N LEU A 152 O TYR A 308 SHEET 6 AA2 7 VAL A 160 GLU A 167 -1 O SER A 161 N ASN A 155 SHEET 7 AA2 7 ASN A 170 SER A 177 -1 O SER A 172 N LYS A 164 SHEET 1 AA3 2 MET A 214 LEU A 215 0 SHEET 2 AA3 2 ILE A 234 SER A 236 -1 O ALA A 235 N MET A 214 SHEET 1 AA4 2 TYR A 260 SER A 261 0 SHEET 2 AA4 2 PHE B 274 LYS B 275 -1 O PHE B 274 N SER A 261 SHEET 1 AA5 6 GLN B 6 SER B 9 0 SHEET 2 AA5 6 ARG B 41 GLU B 48 -1 O LEU B 42 N ILE B 8 SHEET 3 AA5 6 LEU B 29 PHE B 34 -1 N ALA B 30 O ILE B 47 SHEET 4 AA5 6 PHE B 19 ILE B 25 -1 N ASP B 24 O LYS B 31 SHEET 5 AA5 6 THR B 74 THR B 79 1 O THR B 79 N ILE B 23 SHEET 6 AA5 6 GLY B 99 ARG B 102 1 O SER B 101 N ALA B 78 SHEET 1 AA6 7 GLY B 132 ILE B 136 0 SHEET 2 AA6 7 VAL B 124 ASN B 128 -1 N VAL B 124 O ILE B 136 SHEET 3 AA6 7 GLN B 337 LEU B 341 -1 O PHE B 340 N PHE B 125 SHEET 4 AA6 7 ASN B 306 GLY B 311 1 N PHE B 309 O PHE B 339 SHEET 5 AA6 7 TYR B 151 ILE B 156 1 N VAL B 154 O TYR B 308 SHEET 6 AA6 7 VAL B 160 GLU B 167 -1 O SER B 161 N ASN B 155 SHEET 7 AA6 7 ASN B 170 SER B 177 -1 O SER B 177 N VAL B 160 SHEET 1 AA7 2 MET B 214 LEU B 215 0 SHEET 2 AA7 2 ILE B 234 SER B 236 -1 O SER B 236 N MET B 214 CISPEP 1 TYR A 149 PRO A 150 0 -9.07 CISPEP 2 TYR B 149 PRO B 150 0 -13.23 CRYST1 51.140 52.770 70.570 71.26 85.82 64.46 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019554 -0.009344 0.001669 0.00000 SCALE2 0.000000 0.021002 -0.007146 0.00000 SCALE3 0.000000 0.000000 0.015008 0.00000