data_7T1O # _entry.id 7T1O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.361 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7T1O pdb_00007t1o 10.2210/pdb7t1o/pdb WWPDB D_1000260995 ? ? BMRB 30972 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type SASBDB . SASDMF9 'associated SAS data' BMRB 'Solution structure of 7SK stem-loop 1 with HIV-1 Tat Subtype G Arginine Rich Motif' 30972 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7T1O _pdbx_database_status.recvd_initial_deposition_date 2021-12-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Pham, V.V.' 1 0000-0002-3981-404X 'Gao, M.' 2 0000-0003-4513-0792 ;D'Souza, V.M. ; 3 0000-0002-5397-9481 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Commun Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2399-3642 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 5 _citation.language ? _citation.page_first 819 _citation.page_last 819 _citation.title 'A structure-based mechanism for displacement of the HEXIM adapter from 7SK small nuclear RNA.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s42003-022-03734-w _citation.pdbx_database_id_PubMed 35970937 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pham, V.V.' 1 ? primary 'Gao, M.' 2 ? primary 'Meagher, J.L.' 3 ? primary 'Smith, J.L.' 4 0000-0002-0664-9228 primary ;D'Souza, V.M. ; 5 0000-0002-5397-9481 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '7SK stem-loop 1 RNA (56-MER)' 17986.635 1 ? ? ? ? 2 polymer syn 'Tat Subtype G Arginine Rich Motif' 2172.551 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGGAUCUGUCACCCCAUUGAUCGCCAGUGGCUGAUCUGGCUGGCUAGGCGGGUCCC GGGAUCUGUCACCCCAUUGAUCGCCAGUGGCUGAUCUGGCUGGCUAGGCGGGUCCC A ? 2 'polypeptide(L)' no no GISYGRKKRRHRRRAHQ GISYGRKKRRHRRRAHQ B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 U n 1 6 C n 1 7 U n 1 8 G n 1 9 U n 1 10 C n 1 11 A n 1 12 C n 1 13 C n 1 14 C n 1 15 C n 1 16 A n 1 17 U n 1 18 U n 1 19 G n 1 20 A n 1 21 U n 1 22 C n 1 23 G n 1 24 C n 1 25 C n 1 26 A n 1 27 G n 1 28 U n 1 29 G n 1 30 G n 1 31 C n 1 32 U n 1 33 G n 1 34 A n 1 35 U n 1 36 C n 1 37 U n 1 38 G n 1 39 G n 1 40 C n 1 41 U n 1 42 G n 1 43 G n 1 44 C n 1 45 U n 1 46 A n 1 47 G n 1 48 G n 1 49 C n 1 50 G n 1 51 G n 1 52 G n 1 53 U n 1 54 C n 1 55 C n 1 56 C n 2 1 GLY n 2 2 ILE n 2 3 SER n 2 4 TYR n 2 5 GLY n 2 6 ARG n 2 7 LYS n 2 8 LYS n 2 9 ARG n 2 10 ARG n 2 11 HIS n 2 12 ARG n 2 13 ARG n 2 14 ARG n 2 15 ALA n 2 16 HIS n 2 17 GLN n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 56 'Homo sapiens' Human 9606 ? 2 1 sample 1 17 'HIV-1 06TG.HT008' ? 587638 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7T1O 7T1O ? 1 ? 1 2 PDB 7T1O 7T1O ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7T1O A 1 ? 56 ? 7T1O 24 ? 87 ? 24 87 2 2 7T1O B 1 ? 17 ? 7T1O 44 ? 60 ? 44 60 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 2 '2D 1H-1H NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units Pa _pdbx_nmr_exptl_sample_conditions.pressure 100000 _pdbx_nmr_exptl_sample_conditions.pH 5.6 _pdbx_nmr_exptl_sample_conditions.ionic_strength '10mM Phosphate, 70mM NaCl, 0.1mM EDTA' _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 'TatG:7SK D2O' _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '0.5 mM Tat G, 0.5 mM 7SK, 100% D2O' '100% D2O' 'TatG:7SK D2O' solution ? 2 '0.5 mM Tat G, 0.5 mM 7SK, 90% H2O/10% D2O' '90% H2O/10% D2O' 'TatG:7SK H2O' solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DMX _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 7T1O _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 8 # _pdbx_nmr_ensemble.entry_id 7T1O _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7T1O _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 'peak picking' NMRView ? 'Johnson, One Moon Scientific' 3 'chemical shift assignment' NMRView ? 'Johnson, One Moon Scientific' 4 'data analysis' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 5 processing CYANA ? 'Guntert, Mumenthaler and Wuthrich' 6 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 7 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 8 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' # loop_ _exptl.absorpt_coefficient_mu _exptl.absorpt_correction_T_max _exptl.absorpt_correction_T_min _exptl.absorpt_correction_type _exptl.absorpt_process_details _exptl.entry_id _exptl.crystals_number _exptl.details _exptl.method _exptl.method_details ? ? ? ? ? 7T1O ? ? 'SOLUTION NMR' ? ? ? ? ? ? 7T1O ? ? 'SOLUTION SCATTERING' ? # _struct.entry_id 7T1O _struct.title 'Solution structure of 7SK stem-loop 1 with HIV-1 Tat Subtype G Arginine Rich Motif' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7T1O _struct_keywords.text TRANSCRIPTION _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 24 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 24 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 24 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 55 N3 ? ? A G 25 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 55 O2 ? ? A G 25 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 55 N4 ? ? A G 25 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 54 N3 ? ? A G 26 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 54 O2 ? ? A G 26 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 54 N4 ? ? A G 26 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 53 N3 ? ? A A 27 A U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 53 O4 ? ? A A 27 A U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 52 O6 ? ? A U 28 A G 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 52 N1 ? ? A U 28 A G 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 51 N1 ? ? A C 29 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 51 O6 ? ? A C 29 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 51 N2 ? ? A C 29 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 N3 ? ? ? 1_555 A G 50 O6 ? ? A U 30 A G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A U 7 O2 ? ? ? 1_555 A G 50 N1 ? ? A U 30 A G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 49 N3 ? ? A G 31 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 49 O2 ? ? A G 31 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 49 N4 ? ? A G 31 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 9 N3 ? ? ? 1_555 A G 48 O6 ? ? A U 32 A G 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A U 9 O2 ? ? ? 1_555 A G 48 N1 ? ? A U 32 A G 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 47 N1 ? ? A C 33 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 47 O6 ? ? A C 33 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 47 N2 ? ? A C 33 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 11 N1 ? ? ? 1_555 A A 46 N6 ? ? A A 34 A A 77 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog28 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 39 N1 ? ? A C 37 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 39 O6 ? ? A C 37 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 39 N2 ? ? A C 37 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 38 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 38 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 38 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 16 N1 ? ? ? 1_555 A U 37 N3 ? ? A A 39 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A A 16 N6 ? ? ? 1_555 A U 37 O4 ? ? A A 39 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 20 N7 ? ? A U 40 A A 43 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog43 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 20 N6 ? ? A U 40 A A 43 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog44 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 42 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 42 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 42 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A A 20 N1 ? ? ? 1_555 A U 35 N3 ? ? A A 43 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 20 N6 ? ? ? 1_555 A U 35 O4 ? ? A A 43 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 21 N3 ? ? ? 1_555 A A 34 N1 ? ? A U 44 A A 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A U 21 O4 ? ? ? 1_555 A A 34 N6 ? ? A U 44 A A 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 45 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 45 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 45 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 46 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 46 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 46 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 47 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 47 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 47 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 48 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 48 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 48 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 32 N3 ? ? ? 1_555 A A 34 N7 ? ? A U 63 A A 65 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog64 hydrog ? ? A U 32 O4 ? ? ? 1_555 A A 34 N6 ? ? A U 63 A A 65 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog65 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 71 A G 74 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog66 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 47 O6 ? ? A C 75 A G 78 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 7T1O _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 24 24 G GUA A . n A 1 2 G 2 25 25 G GUA A . n A 1 3 G 3 26 26 G GUA A . n A 1 4 A 4 27 27 A ADE A . n A 1 5 U 5 28 28 U URI A . n A 1 6 C 6 29 29 C CYT A . n A 1 7 U 7 30 30 U URI A . n A 1 8 G 8 31 31 G GUA A . n A 1 9 U 9 32 32 U URI A . n A 1 10 C 10 33 33 C CYT A . n A 1 11 A 11 34 34 A ADE A . n A 1 12 C 12 35 35 C CYT A . n A 1 13 C 13 36 36 C CYT A . n A 1 14 C 14 37 37 C CYT A . n A 1 15 C 15 38 38 C CYT A . n A 1 16 A 16 39 39 A ADE A . n A 1 17 U 17 40 40 U URI A . n A 1 18 U 18 41 41 U URI A . n A 1 19 G 19 42 42 G GUA A . n A 1 20 A 20 43 43 A ADE A . n A 1 21 U 21 44 44 U URI A . n A 1 22 C 22 45 45 C CYT A . n A 1 23 G 23 46 46 G GUA A . n A 1 24 C 24 47 47 C CYT A . n A 1 25 C 25 48 48 C CYT A . n A 1 26 A 26 49 49 A ADE A . n A 1 27 G 27 50 50 G GUA A . n A 1 28 U 28 51 51 U URI A . n A 1 29 G 29 60 60 G GUA A . n A 1 30 G 30 61 61 G GUA A . n A 1 31 C 31 62 62 C CYT A . n A 1 32 U 32 63 63 U URI A . n A 1 33 G 33 64 64 G GUA A . n A 1 34 A 34 65 65 A ADE A . n A 1 35 U 35 66 66 U URI A . n A 1 36 C 36 67 67 C CYT A . n A 1 37 U 37 68 68 U URI A . n A 1 38 G 38 69 69 G GUA A . n A 1 39 G 39 70 70 G GUA A . n A 1 40 C 40 71 71 C CYT A . n A 1 41 U 41 72 72 U URI A . n A 1 42 G 42 73 73 G GUA A . n A 1 43 G 43 74 74 G GUA A . n A 1 44 C 44 75 75 C CYT A . n A 1 45 U 45 76 76 U URI A . n A 1 46 A 46 77 77 A ADE A . n A 1 47 G 47 78 78 G GUA A . n A 1 48 G 48 79 79 G GUA A . n A 1 49 C 49 80 80 C CYT A . n A 1 50 G 50 81 81 G GUA A . n A 1 51 G 51 82 82 G GUA A . n A 1 52 G 52 83 83 G GUA A . n A 1 53 U 53 84 84 U URI A . n A 1 54 C 54 85 85 C CYT A . n A 1 55 C 55 86 86 C CYT A . n A 1 56 C 56 87 87 C CYT A . n B 2 1 GLY 1 44 44 GLY GLY B . n B 2 2 ILE 2 45 45 ILE ILE B . n B 2 3 SER 3 46 46 SER SER B . n B 2 4 TYR 4 47 47 TYR TYR B . n B 2 5 GLY 5 48 48 GLY GLY B . n B 2 6 ARG 6 49 49 ARG ARG B . n B 2 7 LYS 7 50 50 LYS LYS B . n B 2 8 LYS 8 51 51 LYS LYS B . n B 2 9 ARG 9 52 52 ARG ARG B . n B 2 10 ARG 10 53 53 ARG ARG B . n B 2 11 HIS 11 54 54 HIS HIS B . n B 2 12 ARG 12 55 55 ARG ARG B . n B 2 13 ARG 13 56 56 ARG ARG B . n B 2 14 ARG 14 57 57 ARG ARG B . n B 2 15 ALA 15 58 58 ALA ALA B . n B 2 16 HIS 16 59 59 HIS HIS B . n B 2 17 GLN 17 60 60 GLN GLN B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email dsouza@g.harvard.edu _pdbx_contact_author.name_first Victoria _pdbx_contact_author.name_last "D'Souza" _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5397-9481 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2470 ? 1 MORE -7 ? 1 'SSA (A^2)' 10770 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-09-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'Tat G' 0.5 ? mM 'natural abundance' 1 7SK 0.5 ? mM 'natural abundance' 2 'Tat G' 0.5 ? mM 'natural abundance' 2 7SK 0.5 ? mM 'natural abundance' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A U 63 ? ? "O4'" A U 63 ? ? "C4'" A U 63 ? ? 104.38 109.70 -5.32 0.70 N 2 2 "C1'" A U 40 ? ? "O4'" A U 40 ? ? "C4'" A U 40 ? ? 104.97 109.70 -4.73 0.70 N 3 2 "C1'" A C 71 ? ? "O4'" A C 71 ? ? "C4'" A C 71 ? ? 105.28 109.70 -4.42 0.70 N 4 2 "C1'" A C 75 ? ? "O4'" A C 75 ? ? "C4'" A C 75 ? ? 104.88 109.70 -4.82 0.70 N 5 3 "C1'" A U 40 ? ? "O4'" A U 40 ? ? "C4'" A U 40 ? ? 104.96 109.70 -4.74 0.70 N 6 3 "C1'" A U 63 ? ? "O4'" A U 63 ? ? "C4'" A U 63 ? ? 104.25 109.70 -5.45 0.70 N 7 4 "C1'" A U 41 ? ? "O4'" A U 41 ? ? "C4'" A U 41 ? ? 105.21 109.70 -4.49 0.70 N 8 5 "C1'" A U 40 ? ? "O4'" A U 40 ? ? "C4'" A U 40 ? ? 105.00 109.70 -4.70 0.70 N 9 6 "C1'" A U 40 ? ? "O4'" A U 40 ? ? "C4'" A U 40 ? ? 104.39 109.70 -5.31 0.70 N 10 8 "C1'" A U 40 ? ? "O4'" A U 40 ? ? "C4'" A U 40 ? ? 105.47 109.70 -4.23 0.70 N 11 8 "C1'" A U 63 ? ? "O4'" A U 63 ? ? "C4'" A U 63 ? ? 104.67 109.70 -5.03 0.70 N 12 9 "C1'" A U 63 ? ? "O4'" A U 63 ? ? "C4'" A U 63 ? ? 103.70 109.70 -6.00 0.70 N 13 10 "C1'" A U 40 ? ? "O4'" A U 40 ? ? "C4'" A U 40 ? ? 104.53 109.70 -5.17 0.70 N 14 10 "C1'" A U 63 ? ? "O4'" A U 63 ? ? "C4'" A U 63 ? ? 104.53 109.70 -5.17 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS B 50 ? ? -141.41 -56.71 2 1 LYS B 51 ? ? 51.01 70.44 3 1 HIS B 54 ? ? -161.37 -169.32 4 1 ARG B 55 ? ? 68.56 108.74 5 1 ARG B 56 ? ? -165.71 76.24 6 1 ARG B 57 ? ? -157.88 32.30 7 2 ARG B 52 ? ? -141.06 -31.87 8 2 HIS B 54 ? ? -150.77 44.90 9 3 ARG B 52 ? ? -140.80 -12.80 10 4 LYS B 51 ? ? -111.45 77.33 11 4 ARG B 53 ? ? 57.30 82.68 12 4 ARG B 56 ? ? -146.00 -51.95 13 4 ALA B 58 ? ? -140.26 23.18 14 5 ARG B 53 ? ? 62.86 85.44 15 5 HIS B 54 ? ? -145.05 37.86 16 5 ARG B 56 ? ? -146.15 -57.97 17 6 ARG B 55 ? ? 66.59 96.60 18 6 ALA B 58 ? ? -159.38 -35.45 19 7 LYS B 51 ? ? -164.34 30.93 20 7 ARG B 55 ? ? 65.57 77.07 21 8 LYS B 51 ? ? -166.47 96.22 22 9 LYS B 51 ? ? -115.32 -139.79 23 9 ARG B 52 ? ? 71.53 152.12 24 9 ARG B 56 ? ? -151.38 -39.14 25 9 ALA B 58 ? ? -148.05 33.89 26 10 LYS B 50 ? ? 48.78 74.84 27 10 ARG B 52 ? ? -140.87 -34.74 28 10 HIS B 54 ? ? -168.43 55.28 29 10 ARG B 56 ? ? -174.18 -177.86 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7T1O 'double helix' 7T1O 'a-form double helix' 7T1O 'hairpin loop' 7T1O 'bulge loop' 7T1O 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 56 1_555 -0.933 -0.286 0.475 8.173 -10.193 -3.389 1 A_G24:C87_A A 24 ? A 87 ? 19 1 1 A G 2 1_555 A C 55 1_555 -0.858 -0.262 0.323 3.643 -14.996 -2.278 2 A_G25:C86_A A 25 ? A 86 ? 19 1 1 A G 3 1_555 A C 54 1_555 -0.726 -0.138 0.290 0.394 -11.297 -2.177 3 A_G26:C85_A A 26 ? A 85 ? 19 1 1 A A 4 1_555 A U 53 1_555 -0.299 -0.014 -0.058 -0.786 -4.646 -8.834 4 A_A27:U84_A A 27 ? A 84 ? 20 1 1 A U 5 1_555 A G 52 1_555 1.202 -0.136 -0.031 -5.967 -4.127 -9.671 5 A_U28:G83_A A 28 ? A 83 ? 28 1 1 A C 6 1_555 A G 51 1_555 0.326 -0.027 0.461 0.398 -10.578 -2.837 6 A_C29:G82_A A 29 ? A 82 ? 19 1 1 A U 7 1_555 A G 50 1_555 1.418 -0.309 0.264 -3.779 -9.536 -3.819 7 A_U30:G81_A A 30 ? A 81 ? 28 1 1 A G 8 1_555 A C 49 1_555 -0.275 -0.089 0.151 1.584 -16.222 1.897 8 A_G31:C80_A A 31 ? A 80 ? 19 1 1 A U 9 1_555 A G 48 1_555 1.692 -0.282 0.023 -7.217 -7.792 1.419 9 A_U32:G79_A A 32 ? A 79 ? 28 1 1 A C 10 1_555 A G 47 1_555 0.677 -0.054 0.226 -12.802 5.365 -0.232 10 A_C33:G78_A A 33 ? A 78 ? 19 1 1 A A 11 1_555 A A 46 1_555 1.338 0.969 -1.499 -11.154 24.000 -18.339 11 A_A34:A77_A A 34 ? A 77 ? ? 1 1 A C 12 1_555 A G 43 1_555 0.309 0.025 0.038 6.868 4.655 1.044 12 A_C35:G74_A A 35 ? A 74 ? 19 1 1 A C 13 1_555 A G 42 1_555 -0.183 0.059 -0.091 -7.995 12.249 0.132 13 A_C36:G73_A A 36 ? A 73 ? 19 1 1 A C 14 1_555 A G 39 1_555 -0.109 -0.094 0.619 8.177 11.446 6.400 14 A_C37:G70_A A 37 ? A 70 ? 19 1 1 A C 15 1_555 A G 38 1_555 0.403 -0.034 -0.083 -5.349 3.896 1.985 15 A_C38:G69_A A 38 ? A 69 ? 19 1 1 A A 16 1_555 A U 37 1_555 0.284 0.043 -0.351 -6.323 14.881 -9.664 16 A_A39:U68_A A 39 ? A 68 ? 20 1 1 A G 19 1_555 A C 36 1_555 -0.442 -0.173 -0.192 -3.870 18.969 2.051 17 A_G42:C67_A A 42 ? A 67 ? 19 1 1 A A 20 1_555 A U 35 1_555 -0.593 -0.129 -0.225 2.425 15.806 -9.384 18 A_A43:U66_A A 43 ? A 66 ? 20 1 1 A U 21 1_555 A A 34 1_555 0.658 -0.122 -0.008 4.481 8.313 -5.720 19 A_U44:A65_A A 44 ? A 65 ? 20 1 1 A C 22 1_555 A G 33 1_555 -0.191 0.009 0.268 -0.044 16.104 3.110 20 A_C45:G64_A A 45 ? A 64 ? 19 1 1 A G 23 1_555 A C 31 1_555 0.513 0.072 0.055 -3.360 5.492 -0.320 21 A_G46:C62_A A 46 ? A 62 ? 19 1 1 A C 24 1_555 A G 30 1_555 -0.361 0.067 0.182 1.470 10.029 0.860 22 A_C47:G61_A A 47 ? A 61 ? 19 1 1 A C 25 1_555 A G 29 1_555 0.886 -0.319 0.261 16.687 13.296 5.718 23 A_C48:G60_A A 48 ? A 60 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 56 1_555 A G 2 1_555 A C 55 1_555 -0.146 -1.433 3.489 -0.888 10.652 33.268 -4.009 0.108 2.909 18.036 1.504 34.896 1 AA_G24G25:C86C87_AA A 24 ? A 87 ? A 25 ? A 86 ? 1 A G 2 1_555 A C 55 1_555 A G 3 1_555 A C 54 1_555 -0.168 -1.480 3.306 -1.618 13.408 32.894 -4.253 0.056 2.535 22.531 2.718 35.487 2 AA_G25G26:C85C86_AA A 25 ? A 86 ? A 26 ? A 85 ? 1 A G 3 1_555 A C 54 1_555 A A 4 1_555 A U 53 1_555 -0.502 -1.451 3.379 -0.617 10.918 33.354 -3.996 0.745 2.790 18.417 1.041 35.053 3 AA_G26A27:U84C85_AA A 26 ? A 85 ? A 27 ? A 84 ? 1 A A 4 1_555 A U 53 1_555 A U 5 1_555 A G 52 1_555 -0.053 -1.454 3.810 0.942 8.888 37.002 -3.492 0.216 3.382 13.759 -1.458 38.030 4 AA_A27U28:G83U84_AA A 27 ? A 84 ? A 28 ? A 83 ? 1 A U 5 1_555 A G 52 1_555 A C 6 1_555 A G 51 1_555 0.568 -1.649 2.893 1.170 13.051 27.841 -5.114 -0.892 1.962 25.417 -2.279 30.715 5 AA_U28C29:G82G83_AA A 28 ? A 83 ? A 29 ? A 82 ? 1 A C 6 1_555 A G 51 1_555 A U 7 1_555 A G 50 1_555 0.116 -1.230 3.689 2.207 7.061 35.984 -3.008 0.146 3.396 11.284 -3.526 36.712 6 AA_C29U30:G81G82_AA A 29 ? A 82 ? A 30 ? A 81 ? 1 A U 7 1_555 A G 50 1_555 A G 8 1_555 A C 49 1_555 0.502 -1.706 2.668 2.943 16.264 24.491 -5.691 -0.563 1.347 33.853 -6.125 29.475 7 AA_U30G31:C80G81_AA A 30 ? A 81 ? A 31 ? A 80 ? 1 A G 8 1_555 A C 49 1_555 A U 9 1_555 A G 48 1_555 0.193 -1.155 3.884 -0.055 5.460 39.020 -2.467 -0.294 3.695 8.125 0.082 39.385 8 AA_G31U32:G79C80_AA A 31 ? A 80 ? A 32 ? A 79 ? 1 A U 9 1_555 A G 48 1_555 A C 10 1_555 A G 47 1_555 0.229 -2.089 3.516 1.387 14.011 25.542 -6.978 -0.176 2.115 29.046 -2.875 29.109 9 AA_U32C33:G78G79_AA A 32 ? A 79 ? A 33 ? A 78 ? 1 A C 10 1_555 A G 47 1_555 A A 11 1_555 A A 46 1_555 -0.262 -2.707 4.230 13.322 9.858 20.925 -8.738 4.438 2.214 23.038 -31.134 26.635 10 AA_C33A34:A77G78_AA A 33 ? A 78 ? A 34 ? A 77 ? 1 A A 11 1_555 A A 46 1_555 A C 12 1_555 A G 43 1_555 2.703 -1.457 3.749 -10.095 16.347 28.328 -4.842 -6.064 1.660 29.499 18.216 34.118 11 AA_A34C35:G74A77_AA A 34 ? A 77 ? A 35 ? A 74 ? 1 A C 12 1_555 A G 43 1_555 A C 13 1_555 A G 42 1_555 0.394 -2.198 4.404 0.715 14.696 24.349 -8.439 -0.611 2.677 31.438 -1.529 28.392 12 AA_C35C36:G73G74_AA A 35 ? A 74 ? A 36 ? A 73 ? 1 A C 13 1_555 A G 42 1_555 A C 14 1_555 A G 39 1_555 0.863 -1.581 3.824 -13.661 16.109 31.241 -4.596 -3.156 2.231 26.464 22.443 37.564 13 AA_C36C37:G70G73_AA A 36 ? A 73 ? A 37 ? A 70 ? 1 A C 14 1_555 A G 39 1_555 A C 15 1_555 A G 38 1_555 -0.352 -2.027 3.775 4.865 21.705 28.629 -6.200 1.224 1.772 37.557 -8.418 36.112 14 AA_C37C38:G69G70_AA A 37 ? A 70 ? A 38 ? A 69 ? 1 A C 15 1_555 A G 38 1_555 A A 16 1_555 A U 37 1_555 -0.499 -1.935 3.524 2.085 19.254 25.647 -6.582 1.237 1.659 37.335 -4.044 32.039 15 AA_C38A39:U68G69_AA A 38 ? A 69 ? A 39 ? A 68 ? 1 A A 16 1_555 A U 37 1_555 A G 19 1_555 A C 36 1_555 -1.145 -1.964 3.559 -2.741 10.490 35.120 -4.580 1.436 2.950 16.894 4.414 36.705 16 AA_A39G42:C67U68_AA A 39 ? A 68 ? A 42 ? A 67 ? 1 A G 19 1_555 A C 36 1_555 A A 20 1_555 A U 35 1_555 -1.022 -1.772 3.508 -0.309 8.047 25.239 -5.986 2.152 2.829 17.846 0.685 26.472 17 AA_G42A43:U66C67_AA A 42 ? A 67 ? A 43 ? A 66 ? 1 A A 20 1_555 A U 35 1_555 A U 21 1_555 A A 34 1_555 0.152 -1.782 3.683 -0.656 13.054 30.210 -5.430 -0.383 2.699 23.702 1.190 32.856 18 AA_A43U44:A65U66_AA A 43 ? A 66 ? A 44 ? A 65 ? 1 A U 21 1_555 A A 34 1_555 A C 22 1_555 A G 33 1_555 0.672 -2.250 3.983 -2.528 11.542 22.847 -8.473 -2.258 2.487 26.947 5.902 25.686 19 AA_U44C45:G64A65_AA A 44 ? A 65 ? A 45 ? A 64 ? 1 A C 22 1_555 A G 33 1_555 A G 23 1_555 A C 31 1_555 1.746 -1.153 4.489 -3.420 17.594 47.481 -2.976 -2.360 3.742 20.998 4.081 50.567 20 AA_C45G46:C62G64_AA A 45 ? A 64 ? A 46 ? A 62 ? 1 A G 23 1_555 A C 31 1_555 A C 24 1_555 A G 30 1_555 -0.154 -1.989 3.270 -1.221 17.366 21.957 -7.408 0.088 1.364 38.701 2.721 27.955 21 AA_G46C47:G61C62_AA A 46 ? A 62 ? A 47 ? A 61 ? 1 A C 24 1_555 A G 30 1_555 A C 25 1_555 A G 29 1_555 0.368 -1.542 2.932 -2.197 9.790 28.612 -4.568 -1.068 2.259 19.084 4.282 30.285 22 AA_C47C48:G60G61_AA A 47 ? A 61 ? A 48 ? A 60 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Howard Hughes Medical Institute (HHMI)' 'United States' 55108516 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' 'U54 AI50470' 2 # _pdbx_soln_scatter.id 1 _pdbx_soln_scatter.type neutron _pdbx_soln_scatter.source_type '12.3.1 (SIBYLS) beam line' _pdbx_soln_scatter.source_class Y _pdbx_soln_scatter.source_beamline 12.3.1 _pdbx_soln_scatter.source_beamline_instrument SIBYLS _pdbx_soln_scatter.detector_type 'Pilatus3 2M pixel array detector' _pdbx_soln_scatter.detector_specific Dectris _pdbx_soln_scatter.temperature 283 _pdbx_soln_scatter.sample_pH 5.6 _pdbx_soln_scatter.num_time_frames 10 _pdbx_soln_scatter.concentration_range ? _pdbx_soln_scatter.buffer_name '10 mM phosphate, 70 mM NaCl, 0.1 mM EDTA' _pdbx_soln_scatter.data_reduction_software_list ATSAS _pdbx_soln_scatter.data_analysis_software_list Scatter3 _pdbx_soln_scatter.mean_guiner_radius 2.3 _pdbx_soln_scatter.mean_guiner_radius_esd ? _pdbx_soln_scatter.min_mean_cross_sectional_radii_gyration ? _pdbx_soln_scatter.min_mean_cross_sectional_radii_gyration_esd ? _pdbx_soln_scatter.max_mean_cross_sectional_radii_gyration ? _pdbx_soln_scatter.max_mean_cross_sectional_radii_gyration_esd ? _pdbx_soln_scatter.protein_length ? _pdbx_soln_scatter.entry_id 7T1O # _pdbx_soln_scatter_model.scatter_id 1 _pdbx_soln_scatter_model.id 1 _pdbx_soln_scatter_model.method 'This structure was calculated with XPLOR-NIH with a CYANA input and minimized with SAXS.' _pdbx_soln_scatter_model.software_list ? _pdbx_soln_scatter_model.software_author_list ? _pdbx_soln_scatter_model.entry_fitting_list ? _pdbx_soln_scatter_model.num_conformers_calculated ? _pdbx_soln_scatter_model.num_conformers_submitted ? _pdbx_soln_scatter_model.conformer_selection_criteria ? _pdbx_soln_scatter_model.details ? _pdbx_soln_scatter_model.representative_conformer ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details ? #