HEADER LIGASE 02-DEC-21 7T1Y TITLE STRUCTURE OF THE FBW7-SKP1-MYCCDEGRON COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-PHASE KINASE-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYCLIN-A/CDK2-ASSOCIATED PROTEIN P19,P19A,ORGAN OF CORTI COMPND 5 PROTEIN 2,OCP-2,ORGAN OF CORTI PROTEIN II,OCP-II,RNA POLYMERASE II COMPND 6 ELONGATION FACTOR-LIKE PROTEIN,SIII,TRANSCRIPTION ELONGATION FACTOR B COMPND 7 POLYPEPTIDE 1-LIKE,P19SKP1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: F-BOX/WD REPEAT-CONTAINING PROTEIN 7; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: ARCHIPELAGO HOMOLOG,HAGO,F-BOX AND WD-40 DOMAIN-CONTAINING COMPND 13 PROTEIN 7,F-BOX PROTEIN FBX30,SEL-10,HCDC4; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: MYC PROTO-ONCOGENE PROTEIN C TERMINAL DEGRON; COMPND 17 CHAIN: C; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SKP1, EMC19, OCP2, SKP1A, TCEB1L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: FBXW7, FBW7, FBX30, SEL10; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606 KEYWDS UBIQUITIN LIGASE, WD40, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR B.WANG,D.V.RUSNAC,B.E.CLURMAN,N.ZHENG REVDAT 2 18-OCT-23 7T1Y 1 REMARK REVDAT 1 16-FEB-22 7T1Y 0 JRNL AUTH M.WELCKER,B.WANG,D.V.RUSNAC,Y.HUSSAINI,J.SWANGER,N.ZHENG, JRNL AUTH 2 B.E.CLURMAN JRNL TITL TWO DIPHOSPHORYLATED DEGRONS CONTROL C-MYC DEGRADATION BY JRNL TITL 2 THE FBW7 TUMOR SUPPRESSOR. JRNL REF SCI ADV V. 8 L7872 2022 JRNL REFN ESSN 2375-2548 JRNL PMID 35089787 JRNL DOI 10.1126/SCIADV.ABL7872 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 48054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9800 - 6.1400 1.00 3493 152 0.2211 0.2208 REMARK 3 2 6.1400 - 4.8800 1.00 3364 146 0.2181 0.2107 REMARK 3 3 4.8800 - 4.2600 1.00 3322 144 0.1834 0.1881 REMARK 3 4 4.2600 - 3.8700 1.00 3301 143 0.2143 0.2483 REMARK 3 5 3.8700 - 3.5900 1.00 3302 144 0.2466 0.2755 REMARK 3 6 3.5900 - 3.3800 1.00 3276 142 0.2733 0.3031 REMARK 3 7 3.3800 - 3.2100 1.00 3294 143 0.2898 0.3103 REMARK 3 8 3.2100 - 3.0700 1.00 3265 142 0.2985 0.3355 REMARK 3 9 3.0700 - 2.9500 1.00 3274 141 0.3243 0.3724 REMARK 3 10 2.9500 - 2.8500 1.00 3265 142 0.3473 0.3571 REMARK 3 11 2.8500 - 2.7600 1.00 3264 141 0.3478 0.3709 REMARK 3 12 2.7600 - 2.6800 1.00 3254 142 0.3292 0.3620 REMARK 3 13 2.6800 - 2.6100 1.00 3242 140 0.3313 0.3535 REMARK 3 14 2.6100 - 2.5500 0.96 3139 137 0.3407 0.3559 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.418 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.644 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4689 REMARK 3 ANGLE : 1.396 6358 REMARK 3 CHIRALITY : 0.089 729 REMARK 3 PLANARITY : 0.009 800 REMARK 3 DIHEDRAL : 18.468 1709 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7T1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1000258651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48054 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2OVP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE PH6.5, 1.6 M LI2SO4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 116.26900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 116.26900 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.91800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 116.26900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.95900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 116.26900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.87700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 116.26900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.87700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 116.26900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.95900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 116.26900 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 116.26900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.91800 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 116.26900 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 116.26900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 53.91800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 116.26900 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 80.87700 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 116.26900 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 26.95900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 116.26900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 26.95900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 116.26900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 80.87700 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 116.26900 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 116.26900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 53.91800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 66 REMARK 465 ASP A 67 REMARK 465 ASP A 68 REMARK 465 PRO A 69 REMARK 465 PRO A 70 REMARK 465 PRO A 71 REMARK 465 PRO A 72 REMARK 465 GLU A 73 REMARK 465 ASP A 74 REMARK 465 ASP A 75 REMARK 465 GLU A 76 REMARK 465 ASN A 77 REMARK 465 LYS A 78 REMARK 465 GLU A 79 REMARK 465 LYS A 80 REMARK 465 ARG A 81 REMARK 465 THR A 82 REMARK 465 ASP A 83 REMARK 465 CYS A 160 REMARK 465 GLU A 161 REMARK 465 GLU A 162 REMARK 465 LYS A 163 REMARK 465 SER B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 465 GLY B 258 REMARK 465 GLY B 259 REMARK 465 SER B 260 REMARK 465 GLY B 261 REMARK 465 MET B 262 REMARK 465 ARG B 338 REMARK 465 ARG B 339 REMARK 465 LYS B 340 REMARK 465 VAL B 341 REMARK 465 ILE B 342 REMARK 465 LYS B 343 REMARK 465 LYS B 707 REMARK 465 PRO C 235 REMARK 465 GLU C 236 REMARK 465 PRO C 237 REMARK 465 LEU C 238 REMARK 465 VAL C 239 REMARK 465 LEU C 240 REMARK 465 SER C 249 REMARK 465 SER C 250 REMARK 465 ASP C 251 REMARK 465 SER C 252 REMARK 465 GLU C 253 REMARK 465 GLU C 254 REMARK 465 GLU C 255 REMARK 465 GLN C 256 REMARK 465 GLU C 257 REMARK 465 ASP C 258 REMARK 465 GLU C 259 REMARK 465 GLU C 260 REMARK 465 ILE C 261 REMARK 465 ASP C 262 REMARK 465 VAL C 263 REMARK 465 VAL C 264 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 HIS C 241 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 117 OH TYR B 291 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ARG B 278 CD ARG B 278 10775 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 45 79.48 42.94 REMARK 500 LEU A 47 79.19 -118.18 REMARK 500 ASN A 157 41.28 -90.39 REMARK 500 PHE B 295 1.94 -69.41 REMARK 500 ASP B 380 128.44 -37.18 REMARK 500 ASN B 401 -5.88 81.90 REMARK 500 ARG B 430 -80.15 -110.84 REMARK 500 ARG B 441 31.54 -68.09 REMARK 500 HIS B 470 -74.81 -83.78 REMARK 500 GLU B 471 -82.92 -125.57 REMARK 500 ILE B 552 -48.68 -130.12 REMARK 500 LEU B 559 2.83 -66.01 REMARK 500 THR B 561 -0.91 64.78 REMARK 500 SER B 582 -157.76 -154.24 REMARK 500 LYS B 590 111.82 -163.90 REMARK 500 GLN B 618 -143.82 -141.39 REMARK 500 ILE B 657 -60.73 -99.43 REMARK 500 SER B 688 141.03 -171.82 REMARK 500 ASN B 690 19.65 -146.38 REMARK 500 REMARK 500 REMARK: NULL DBREF 7T1Y A 2 163 UNP P63208 SKP1_HUMAN 2 163 DBREF 7T1Y B 263 707 UNP Q969H0 FBXW7_HUMAN 263 707 DBREF 7T1Y C 235 264 PDB 7T1Y 7T1Y 235 264 SEQADV 7T1Y MET A 1 UNP P63208 INITIATING METHIONINE SEQADV 7T1Y A UNP P63208 ASP 38 DELETION SEQADV 7T1Y A UNP P63208 GLU 39 DELETION SEQADV 7T1Y A UNP P63208 GLY 40 DELETION SEQADV 7T1Y A UNP P63208 ASP 41 DELETION SEQADV 7T1Y A UNP P63208 ASP 42 DELETION SEQADV 7T1Y A UNP P63208 ASP 43 DELETION SEQADV 7T1Y A UNP P63208 PRO 44 DELETION SEQADV 7T1Y SER B 251 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Y HIS B 252 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Y HIS B 253 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Y HIS B 254 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Y HIS B 255 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Y HIS B 256 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Y HIS B 257 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Y GLY B 258 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Y GLY B 259 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Y SER B 260 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Y GLY B 261 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Y MET B 262 UNP Q969H0 EXPRESSION TAG SEQRES 1 A 156 MET PRO SER ILE LYS LEU GLN SER SER ASP GLY GLU ILE SEQRES 2 A 156 PHE GLU VAL ASP VAL GLU ILE ALA LYS GLN SER VAL THR SEQRES 3 A 156 ILE LYS THR MET LEU GLU ASP LEU GLY MET ASP VAL PRO SEQRES 4 A 156 LEU PRO ASN VAL ASN ALA ALA ILE LEU LYS LYS VAL ILE SEQRES 5 A 156 GLN TRP CYS THR HIS HIS LYS ASP ASP PRO PRO PRO PRO SEQRES 6 A 156 GLU ASP ASP GLU ASN LYS GLU LYS ARG THR ASP ASP ILE SEQRES 7 A 156 PRO VAL TRP ASP GLN GLU PHE LEU LYS VAL ASP GLN GLY SEQRES 8 A 156 THR LEU PHE GLU LEU ILE LEU ALA ALA ASN TYR LEU ASP SEQRES 9 A 156 ILE LYS GLY LEU LEU ASP VAL THR CYS LYS THR VAL ALA SEQRES 10 A 156 ASN MET ILE LYS GLY LYS THR PRO GLU GLU ILE ARG LYS SEQRES 11 A 156 THR PHE ASN ILE LYS ASN ASP PHE THR GLU GLU GLU GLU SEQRES 12 A 156 ALA GLN VAL ARG LYS GLU ASN GLN TRP CYS GLU GLU LYS SEQRES 1 B 457 SER HIS HIS HIS HIS HIS HIS GLY GLY SER GLY MET THR SEQRES 2 B 457 GLN VAL LYS HIS MET MET GLN VAL ILE GLU PRO GLN PHE SEQRES 3 B 457 GLN ARG ASP PHE ILE SER LEU LEU PRO LYS GLU LEU ALA SEQRES 4 B 457 LEU TYR VAL LEU SER PHE LEU GLU PRO LYS ASP LEU LEU SEQRES 5 B 457 GLN ALA ALA GLN THR CYS ARG TYR TRP ARG ILE LEU ALA SEQRES 6 B 457 GLU ASP ASN LEU LEU TRP ARG GLU LYS CYS LYS GLU GLU SEQRES 7 B 457 GLY ILE ASP GLU PRO LEU HIS ILE LYS ARG ARG LYS VAL SEQRES 8 B 457 ILE LYS PRO GLY PHE ILE HIS SER PRO TRP LYS SER ALA SEQRES 9 B 457 TYR ILE ARG GLN HIS ARG ILE ASP THR ASN TRP ARG ARG SEQRES 10 B 457 GLY GLU LEU LYS SER PRO LYS VAL LEU LYS GLY HIS ASP SEQRES 11 B 457 ASP HIS VAL ILE THR CYS LEU GLN PHE CYS GLY ASN ARG SEQRES 12 B 457 ILE VAL SER GLY SER ASP ASP ASN THR LEU LYS VAL TRP SEQRES 13 B 457 SER ALA VAL THR GLY LYS CYS LEU ARG THR LEU VAL GLY SEQRES 14 B 457 HIS THR GLY GLY VAL TRP SER SER GLN MET ARG ASP ASN SEQRES 15 B 457 ILE ILE ILE SER GLY SER THR ASP ARG THR LEU LYS VAL SEQRES 16 B 457 TRP ASN ALA GLU THR GLY GLU CYS ILE HIS THR LEU TYR SEQRES 17 B 457 GLY HIS THR SER THR VAL ARG CYS MET HIS LEU HIS GLU SEQRES 18 B 457 LYS ARG VAL VAL SER GLY SER ARG ASP ALA THR LEU ARG SEQRES 19 B 457 VAL TRP ASP ILE GLU THR GLY GLN CYS LEU HIS VAL LEU SEQRES 20 B 457 MET GLY HIS VAL ALA ALA VAL ARG CYS VAL GLN TYR ASP SEQRES 21 B 457 GLY ARG ARG VAL VAL SER GLY ALA TYR ASP PHE MET VAL SEQRES 22 B 457 LYS VAL TRP ASP PRO GLU THR GLU THR CYS LEU HIS THR SEQRES 23 B 457 LEU GLN GLY HIS THR ASN ARG VAL TYR SER LEU GLN PHE SEQRES 24 B 457 ASP GLY ILE HIS VAL VAL SER GLY SER LEU ASP THR SER SEQRES 25 B 457 ILE ARG VAL TRP ASP VAL GLU THR GLY ASN CYS ILE HIS SEQRES 26 B 457 THR LEU THR GLY HIS GLN SER LEU THR SER GLY MET GLU SEQRES 27 B 457 LEU LYS ASP ASN ILE LEU VAL SER GLY ASN ALA ASP SER SEQRES 28 B 457 THR VAL LYS ILE TRP ASP ILE LYS THR GLY GLN CYS LEU SEQRES 29 B 457 GLN THR LEU GLN GLY PRO ASN LYS HIS GLN SER ALA VAL SEQRES 30 B 457 THR CYS LEU GLN PHE ASN LYS ASN PHE VAL ILE THR SER SEQRES 31 B 457 SER ASP ASP GLY THR VAL LYS LEU TRP ASP LEU LYS THR SEQRES 32 B 457 GLY GLU PHE ILE ARG ASN LEU VAL THR LEU GLU SER GLY SEQRES 33 B 457 GLY SER GLY GLY VAL VAL TRP ARG ILE ARG ALA SER ASN SEQRES 34 B 457 THR LYS LEU VAL CYS ALA VAL GLY SER ARG ASN GLY THR SEQRES 35 B 457 GLU GLU THR LYS LEU LEU VAL LEU ASP PHE ASP VAL ASP SEQRES 36 B 457 MET LYS SEQRES 1 C 30 PRO GLU PRO LEU VAL LEU HIS GLU GLU TPO PRO PRO THR SEQRES 2 C 30 TPO SER SER ASP SER GLU GLU GLU GLN GLU ASP GLU GLU SEQRES 3 C 30 ILE ASP VAL VAL HET TPO C 244 11 HET TPO C 248 16 HET SO4 B 801 5 HET SO4 B 802 5 HET SO4 B 803 5 HETNAM TPO PHOSPHOTHREONINE HETNAM SO4 SULFATE ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 3 TPO 2(C4 H10 N O6 P) FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *73(H2 O) HELIX 1 AA1 VAL A 18 LYS A 22 1 5 HELIX 2 AA2 SER A 24 ASP A 33 1 10 HELIX 3 AA3 ASN A 51 HIS A 64 1 14 HELIX 4 AA4 PRO A 86 LEU A 93 1 8 HELIX 5 AA5 ASP A 96 ASP A 111 1 16 HELIX 6 AA6 ILE A 112 GLY A 129 1 18 HELIX 7 AA7 THR A 131 ASN A 140 1 10 HELIX 8 AA8 THR A 146 ASN A 157 1 12 HELIX 9 AA9 GLN B 264 GLU B 273 1 10 HELIX 10 AB1 ASP B 279 LEU B 284 1 6 HELIX 11 AB2 PRO B 285 SER B 294 1 10 HELIX 12 AB3 GLU B 297 ALA B 305 1 9 HELIX 13 AB4 CYS B 308 ALA B 315 1 8 HELIX 14 AB5 ASP B 317 GLU B 328 1 12 HELIX 15 AB6 SER B 349 GLY B 368 1 20 HELIX 16 AB7 SER B 665 GLY B 669 5 5 SHEET 1 AA1 3 ILE A 13 ASP A 17 0 SHEET 2 AA1 3 SER A 3 SER A 8 -1 N LEU A 6 O PHE A 14 SHEET 3 AA1 3 PRO A 46 LEU A 47 1 O LEU A 47 N GLN A 7 SHEET 1 AA2 4 LYS B 374 LYS B 377 0 SHEET 2 AA2 4 LYS B 696 ASP B 701 -1 O LEU B 697 N LEU B 376 SHEET 3 AA2 4 LYS B 681 GLY B 687 -1 N CYS B 684 O LEU B 698 SHEET 4 AA2 4 VAL B 671 ALA B 677 -1 N ARG B 674 O ALA B 685 SHEET 1 AA3 4 ILE B 384 CYS B 390 0 SHEET 2 AA3 4 ARG B 393 SER B 398 -1 O ARG B 393 N CYS B 390 SHEET 3 AA3 4 LEU B 403 SER B 407 -1 O TRP B 406 N ILE B 394 SHEET 4 AA3 4 CYS B 413 LEU B 417 -1 O LEU B 414 N VAL B 405 SHEET 1 AA4 4 VAL B 424 MET B 429 0 SHEET 2 AA4 4 ILE B 433 SER B 438 -1 O ILE B 435 N GLN B 428 SHEET 3 AA4 4 LEU B 443 ASN B 447 -1 O TRP B 446 N ILE B 434 SHEET 4 AA4 4 GLU B 452 LEU B 457 -1 O ILE B 454 N VAL B 445 SHEET 1 AA5 4 VAL B 464 LEU B 469 0 SHEET 2 AA5 4 ARG B 473 SER B 478 -1 O GLY B 477 N CYS B 466 SHEET 3 AA5 4 THR B 482 ASP B 487 -1 O TRP B 486 N VAL B 474 SHEET 4 AA5 4 CYS B 493 MET B 498 -1 O LEU B 497 N LEU B 483 SHEET 1 AA6 4 VAL B 504 TYR B 509 0 SHEET 2 AA6 4 VAL B 514 ALA B 518 -1 O GLY B 517 N ARG B 505 SHEET 3 AA6 4 MET B 522 ASP B 527 -1 O TRP B 526 N VAL B 514 SHEET 4 AA6 4 THR B 532 GLN B 538 -1 O LEU B 537 N VAL B 523 SHEET 1 AA7 4 VAL B 544 PHE B 549 0 SHEET 2 AA7 4 HIS B 553 SER B 558 -1 O VAL B 555 N GLN B 548 SHEET 3 AA7 4 ILE B 563 ASP B 567 -1 O TRP B 566 N VAL B 554 SHEET 4 AA7 4 CYS B 573 LEU B 577 -1 O ILE B 574 N VAL B 565 SHEET 1 AA8 4 THR B 584 LYS B 590 0 SHEET 2 AA8 4 ILE B 593 ASN B 598 -1 O GLY B 597 N GLY B 586 SHEET 3 AA8 4 VAL B 603 ASP B 607 -1 O TRP B 606 N LEU B 594 SHEET 4 AA8 4 CYS B 613 LEU B 617 -1 O LEU B 617 N VAL B 603 SHEET 1 AA9 4 VAL B 627 PHE B 632 0 SHEET 2 AA9 4 PHE B 636 SER B 641 -1 O ILE B 638 N GLN B 631 SHEET 3 AA9 4 THR B 645 ASP B 650 -1 O LYS B 647 N THR B 639 SHEET 4 AA9 4 PHE B 656 THR B 662 -1 O ARG B 658 N LEU B 648 LINK C GLU C 243 N TPO C 244 1555 1555 1.33 LINK C TPO C 244 N PRO C 245 1555 1555 1.34 LINK C THR C 247 N TPO C 248 1555 1555 1.33 CRYST1 232.538 232.538 107.836 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004300 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009273 0.00000