HEADER LIGASE 02-DEC-21 7T1Z TITLE STRUCTURE OF THE FBW7-SKP1-MYCNDEGRON COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-PHASE KINASE-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYCLIN-A/CDK2-ASSOCIATED PROTEIN P19,P19A,ORGAN OF CORTI COMPND 5 PROTEIN 2,OCP-2,ORGAN OF CORTI PROTEIN II,OCP-II,RNA POLYMERASE II COMPND 6 ELONGATION FACTOR-LIKE PROTEIN,SIII,TRANSCRIPTION ELONGATION FACTOR B COMPND 7 POLYPEPTIDE 1-LIKE,P19SKP1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: F-BOX/WD REPEAT-CONTAINING PROTEIN 7; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: ARCHIPELAGO HOMOLOG,HAGO,F-BOX AND WD-40 DOMAIN-CONTAINING COMPND 13 PROTEIN 7,F-BOX PROTEIN FBX30,SEL-10,HCDC4; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: MYC PROTO-ONCOGENE N TERMINAL DEGRON; COMPND 17 CHAIN: C; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SKP1, EMC19, OCP2, SKP1A, TCEB1L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: FBXW7, FBW7, FBX30, SEL10; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS UBIQUITIN LIGASE, WD40, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR B.WANG,D.V.RUSNAC,B.E.CLURMAN,N.ZHENG REVDAT 2 18-OCT-23 7T1Z 1 REMARK REVDAT 1 16-FEB-22 7T1Z 0 JRNL AUTH M.WELCKER,B.WANG,D.V.RUSNAC,Y.HUSSAINI,J.SWANGER,N.ZHENG, JRNL AUTH 2 B.E.CLURMAN JRNL TITL TWO DIPHOSPHORYLATED DEGRONS CONTROL C-MYC DEGRADATION BY JRNL TITL 2 THE FBW7 TUMOR SUPPRESSOR. JRNL REF SCI ADV V. 8 L7872 2022 JRNL REFN ESSN 2375-2548 JRNL PMID 35089787 JRNL DOI 10.1126/SCIADV.ABL7872 REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.310 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9600 - 6.6700 1.00 2710 152 0.2250 0.2183 REMARK 3 2 6.6600 - 5.3000 1.00 2605 145 0.2379 0.2616 REMARK 3 3 5.2900 - 4.6300 1.00 2570 145 0.1808 0.2067 REMARK 3 4 4.6200 - 4.2000 1.00 2558 142 0.1668 0.2051 REMARK 3 5 4.2000 - 3.9000 1.00 2538 143 0.1950 0.2252 REMARK 3 6 3.9000 - 3.6700 1.00 2539 143 0.1982 0.2138 REMARK 3 7 3.6700 - 3.4900 1.00 2539 142 0.2013 0.2547 REMARK 3 8 3.4900 - 3.3400 1.00 2514 141 0.2538 0.2599 REMARK 3 9 3.3400 - 3.2100 1.00 2512 141 0.2556 0.2866 REMARK 3 10 3.2100 - 3.1000 1.00 2532 142 0.2528 0.2841 REMARK 3 11 3.1000 - 3.0000 1.00 2504 140 0.2572 0.3073 REMARK 3 12 3.0000 - 2.9100 1.00 2518 142 0.2774 0.3306 REMARK 3 13 2.9100 - 2.8400 1.00 2512 141 0.3210 0.3302 REMARK 3 14 2.8400 - 2.7700 1.00 2504 140 0.3816 0.4331 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.415 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.164 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.026 4686 REMARK 3 ANGLE : 1.404 6352 REMARK 3 CHIRALITY : 0.082 728 REMARK 3 PLANARITY : 0.011 796 REMARK 3 DIHEDRAL : 18.265 1709 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7T1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1000258647. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37654 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2OVP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE PH6.5, 1.6 M LI2SO4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 116.43450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 116.43450 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.58050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 116.43450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.79025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 116.43450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.37075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 116.43450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.37075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 116.43450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.79025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 116.43450 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 116.43450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.58050 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 116.43450 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 116.43450 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 53.58050 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 116.43450 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 80.37075 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 116.43450 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 26.79025 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 116.43450 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 26.79025 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 116.43450 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 80.37075 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 116.43450 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 116.43450 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 53.58050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 38 REMARK 465 GLU A 39 REMARK 465 GLY A 40 REMARK 465 ASP A 41 REMARK 465 ASP A 42 REMARK 465 ASP A 43 REMARK 465 ASP A 81 REMARK 465 ASP A 82 REMARK 465 PRO A 83 REMARK 465 GLY A 84 REMARK 465 GLY A 85 REMARK 465 SER A 86 REMARK 465 GLY A 87 REMARK 465 THR A 88 REMARK 465 ASP A 89 REMARK 465 THR A 160 REMARK 465 GLU A 161 REMARK 465 GLU A 162 REMARK 465 GLU A 163 REMARK 465 SER B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 465 GLY B 258 REMARK 465 GLY B 259 REMARK 465 SER B 260 REMARK 465 GLY B 261 REMARK 465 MET B 262 REMARK 465 ARG B 338 REMARK 465 ARG B 339 REMARK 465 LYS B 340 REMARK 465 VAL B 341 REMARK 465 ILE B 342 REMARK 465 MET B 706 REMARK 465 LYS B 707 REMARK 465 GLU C 47 REMARK 465 ASP C 48 REMARK 465 ILE C 49 REMARK 465 TRP C 50 REMARK 465 PRO C 63 REMARK 465 SER C 64 REMARK 465 ARG C 65 REMARK 465 ARG C 66 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 90 CG CD OE1 NE2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ARG B 278 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS B 460 O HOH B 901 2.10 REMARK 500 OG1 THR B 616 O HOH B 902 2.11 REMARK 500 N THR B 576 O HOH B 903 2.15 REMARK 500 O HOH B 976 O HOH B 983 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 622 CA - CB - CG ANGL. DEV. = -18.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 47 79.32 -113.65 REMARK 500 GLU A 91 -50.50 67.20 REMARK 500 LYS A 94 39.93 -94.81 REMARK 500 ASP A 111 86.19 -62.51 REMARK 500 ARG A 136 -9.30 -58.14 REMARK 500 ASN A 157 52.86 -115.50 REMARK 500 GLU B 332 117.13 -170.20 REMARK 500 ASN B 401 -6.24 85.50 REMARK 500 ARG B 430 -72.09 -98.36 REMARK 500 ASP B 431 102.99 -163.82 REMARK 500 ASN B 432 -10.42 67.68 REMARK 500 GLU B 471 -101.33 66.83 REMARK 500 ALA B 481 1.96 80.64 REMARK 500 ARG B 512 -55.74 -142.03 REMARK 500 GLN B 618 50.92 -158.10 REMARK 500 SER B 625 -167.80 -115.47 REMARK 500 ILE B 657 -62.67 -102.39 REMARK 500 GLU C 54 -1.52 60.31 REMARK 500 TPO C 58 143.08 -179.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 619 PRO B 620 149.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7T1Y RELATED DB: PDB DBREF 7T1Z A 2 163 UNP P63208 SKP1_HUMAN 2 163 DBREF 7T1Z B 263 707 UNP Q969H0 FBXW7_HUMAN 263 707 DBREF 7T1Z C 47 66 PDB 7T1Z 7T1Z 47 66 SEQADV 7T1Z MET A 1 UNP P63208 INITIATING METHIONINE SEQADV 7T1Z GLY A 84 UNP P63208 PRO 70 LINKER SEQADV 7T1Z GLY A 85 UNP P63208 PRO 71 LINKER SEQADV 7T1Z SER A 86 UNP P63208 PRO 72 LINKER SEQADV 7T1Z GLY A 87 UNP P63208 GLU 73 LINKER SEQADV 7T1Z THR A 88 UNP P63208 ASP 74 LINKER SEQADV 7T1Z A UNP P63208 ARG 81 DELETION SEQADV 7T1Z A UNP P63208 THR 82 DELETION SEQADV 7T1Z A UNP P63208 ASP 83 DELETION SEQADV 7T1Z A UNP P63208 ASP 84 DELETION SEQADV 7T1Z A UNP P63208 ILE 85 DELETION SEQADV 7T1Z A UNP P63208 PRO 86 DELETION SEQADV 7T1Z A UNP P63208 VAL 87 DELETION SEQADV 7T1Z A UNP P63208 TRP 88 DELETION SEQADV 7T1Z THR A 160 UNP P63208 CYS 160 CONFLICT SEQADV 7T1Z GLU A 163 UNP P63208 LYS 163 CONFLICT SEQADV 7T1Z SER B 251 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Z HIS B 252 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Z HIS B 253 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Z HIS B 254 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Z HIS B 255 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Z HIS B 256 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Z HIS B 257 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Z GLY B 258 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Z GLY B 259 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Z SER B 260 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Z GLY B 261 UNP Q969H0 EXPRESSION TAG SEQADV 7T1Z MET B 262 UNP Q969H0 EXPRESSION TAG SEQRES 1 A 149 MET PRO SER ILE LYS LEU GLN SER SER ASP GLY GLU ILE SEQRES 2 A 149 PHE GLU VAL ASP VAL GLU ILE ALA LYS GLN SER VAL THR SEQRES 3 A 149 ILE LYS THR MET LEU GLU ASP LEU GLY MET ASP ASP GLU SEQRES 4 A 149 GLY ASP ASP ASP PRO VAL PRO LEU PRO ASN VAL ASN ALA SEQRES 5 A 149 ALA ILE LEU LYS LYS VAL ILE GLN TRP CYS THR HIS HIS SEQRES 6 A 149 LYS ASP ASP PRO GLY GLY SER GLY THR ASP GLN GLU PHE SEQRES 7 A 149 LEU LYS VAL ASP GLN GLY THR LEU PHE GLU LEU ILE LEU SEQRES 8 A 149 ALA ALA ASN TYR LEU ASP ILE LYS GLY LEU LEU ASP VAL SEQRES 9 A 149 THR CYS LYS THR VAL ALA ASN MET ILE LYS GLY LYS THR SEQRES 10 A 149 PRO GLU GLU ILE ARG LYS THR PHE ASN ILE LYS ASN ASP SEQRES 11 A 149 PHE THR GLU GLU GLU GLU ALA GLN VAL ARG LYS GLU ASN SEQRES 12 A 149 GLN TRP THR GLU GLU GLU SEQRES 1 B 457 SER HIS HIS HIS HIS HIS HIS GLY GLY SER GLY MET THR SEQRES 2 B 457 GLN VAL LYS HIS MET MET GLN VAL ILE GLU PRO GLN PHE SEQRES 3 B 457 GLN ARG ASP PHE ILE SER LEU LEU PRO LYS GLU LEU ALA SEQRES 4 B 457 LEU TYR VAL LEU SER PHE LEU GLU PRO LYS ASP LEU LEU SEQRES 5 B 457 GLN ALA ALA GLN THR CYS ARG TYR TRP ARG ILE LEU ALA SEQRES 6 B 457 GLU ASP ASN LEU LEU TRP ARG GLU LYS CYS LYS GLU GLU SEQRES 7 B 457 GLY ILE ASP GLU PRO LEU HIS ILE LYS ARG ARG LYS VAL SEQRES 8 B 457 ILE LYS PRO GLY PHE ILE HIS SER PRO TRP LYS SER ALA SEQRES 9 B 457 TYR ILE ARG GLN HIS ARG ILE ASP THR ASN TRP ARG ARG SEQRES 10 B 457 GLY GLU LEU LYS SER PRO LYS VAL LEU LYS GLY HIS ASP SEQRES 11 B 457 ASP HIS VAL ILE THR CYS LEU GLN PHE CYS GLY ASN ARG SEQRES 12 B 457 ILE VAL SER GLY SER ASP ASP ASN THR LEU LYS VAL TRP SEQRES 13 B 457 SER ALA VAL THR GLY LYS CYS LEU ARG THR LEU VAL GLY SEQRES 14 B 457 HIS THR GLY GLY VAL TRP SER SER GLN MET ARG ASP ASN SEQRES 15 B 457 ILE ILE ILE SER GLY SER THR ASP ARG THR LEU LYS VAL SEQRES 16 B 457 TRP ASN ALA GLU THR GLY GLU CYS ILE HIS THR LEU TYR SEQRES 17 B 457 GLY HIS THR SER THR VAL ARG CYS MET HIS LEU HIS GLU SEQRES 18 B 457 LYS ARG VAL VAL SER GLY SER ARG ASP ALA THR LEU ARG SEQRES 19 B 457 VAL TRP ASP ILE GLU THR GLY GLN CYS LEU HIS VAL LEU SEQRES 20 B 457 MET GLY HIS VAL ALA ALA VAL ARG CYS VAL GLN TYR ASP SEQRES 21 B 457 GLY ARG ARG VAL VAL SER GLY ALA TYR ASP PHE MET VAL SEQRES 22 B 457 LYS VAL TRP ASP PRO GLU THR GLU THR CYS LEU HIS THR SEQRES 23 B 457 LEU GLN GLY HIS THR ASN ARG VAL TYR SER LEU GLN PHE SEQRES 24 B 457 ASP GLY ILE HIS VAL VAL SER GLY SER LEU ASP THR SER SEQRES 25 B 457 ILE ARG VAL TRP ASP VAL GLU THR GLY ASN CYS ILE HIS SEQRES 26 B 457 THR LEU THR GLY HIS GLN SER LEU THR SER GLY MET GLU SEQRES 27 B 457 LEU LYS ASP ASN ILE LEU VAL SER GLY ASN ALA ASP SER SEQRES 28 B 457 THR VAL LYS ILE TRP ASP ILE LYS THR GLY GLN CYS LEU SEQRES 29 B 457 GLN THR LEU GLN GLY PRO ASN LYS HIS GLN SER ALA VAL SEQRES 30 B 457 THR CYS LEU GLN PHE ASN LYS ASN PHE VAL ILE THR SER SEQRES 31 B 457 SER ASP ASP GLY THR VAL LYS LEU TRP ASP LEU LYS THR SEQRES 32 B 457 GLY GLU PHE ILE ARG ASN LEU VAL THR LEU GLU SER GLY SEQRES 33 B 457 GLY SER GLY GLY VAL VAL TRP ARG ILE ARG ALA SER ASN SEQRES 34 B 457 THR LYS LEU VAL CYS ALA VAL GLY SER ARG ASN GLY THR SEQRES 35 B 457 GLU GLU THR LYS LEU LEU VAL LEU ASP PHE ASP VAL ASP SEQRES 36 B 457 MET LYS SEQRES 1 C 20 GLU ASP ILE TRP LYS LYS PHE GLU LEU LEU PRO TPO PRO SEQRES 2 C 20 PRO LEU SEP PRO SER ARG ARG HET TPO C 58 11 HET SEP C 62 10 HET SO4 B 801 5 HET SO4 B 802 5 HET SO4 B 803 5 HET SO4 B 804 5 HET SO4 B 805 5 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM SO4 SULFATE ION HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 3 TPO C4 H10 N O6 P FORMUL 3 SEP C3 H8 N O6 P FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 HOH *99(H2 O) HELIX 1 AA1 ASP A 17 LYS A 22 1 6 HELIX 2 AA2 SER A 24 ASP A 33 1 10 HELIX 3 AA3 ASN A 51 HIS A 65 1 15 HELIX 4 AA4 GLY A 98 LEU A 110 1 13 HELIX 5 AA5 ILE A 112 MET A 126 1 15 HELIX 6 AA6 THR A 131 PHE A 139 1 9 HELIX 7 AA7 THR A 146 ASN A 157 1 12 HELIX 8 AA8 GLN B 264 GLN B 270 1 7 HELIX 9 AA9 PRO B 285 SER B 294 1 10 HELIX 10 AB1 GLU B 297 ALA B 305 1 9 HELIX 11 AB2 CYS B 308 ALA B 315 1 8 HELIX 12 AB3 ASP B 317 GLU B 328 1 12 HELIX 13 AB4 SER B 349 GLY B 368 1 20 HELIX 14 AB5 SER B 665 GLY B 669 5 5 SHEET 1 AA1 3 ILE A 13 VAL A 16 0 SHEET 2 AA1 3 ILE A 4 GLN A 7 -1 N ILE A 4 O VAL A 16 SHEET 3 AA1 3 VAL A 45 PRO A 46 1 O VAL A 45 N GLN A 7 SHEET 1 AA2 4 LYS B 374 LYS B 377 0 SHEET 2 AA2 4 LYS B 696 ASP B 701 -1 O LEU B 697 N LEU B 376 SHEET 3 AA2 4 LYS B 681 GLY B 687 -1 N VAL B 686 O LYS B 696 SHEET 4 AA2 4 VAL B 671 ALA B 677 -1 N ARG B 676 O VAL B 683 SHEET 1 AA3 4 ILE B 384 CYS B 390 0 SHEET 2 AA3 4 ARG B 393 SER B 398 -1 O GLY B 397 N CYS B 386 SHEET 3 AA3 4 LEU B 403 SER B 407 -1 O TRP B 406 N ILE B 394 SHEET 4 AA3 4 CYS B 413 LEU B 417 -1 O LEU B 414 N VAL B 405 SHEET 1 AA4 4 VAL B 424 MET B 429 0 SHEET 2 AA4 4 ILE B 433 SER B 438 -1 O ILE B 435 N GLN B 428 SHEET 3 AA4 4 LEU B 443 ASN B 447 -1 O TRP B 446 N ILE B 434 SHEET 4 AA4 4 CYS B 453 LEU B 457 -1 O LEU B 457 N LEU B 443 SHEET 1 AA5 4 VAL B 464 HIS B 470 0 SHEET 2 AA5 4 ARG B 473 SER B 478 -1 O ARG B 473 N HIS B 470 SHEET 3 AA5 4 LEU B 483 ASP B 487 -1 O TRP B 486 N VAL B 474 SHEET 4 AA5 4 CYS B 493 LEU B 497 -1 O LEU B 497 N LEU B 483 SHEET 1 AA6 4 VAL B 504 TYR B 509 0 SHEET 2 AA6 4 VAL B 514 ALA B 518 -1 O VAL B 515 N GLN B 508 SHEET 3 AA6 4 MET B 522 ASP B 527 -1 O TRP B 526 N VAL B 514 SHEET 4 AA6 4 THR B 532 GLN B 538 -1 O LEU B 537 N VAL B 523 SHEET 1 AA7 4 VAL B 544 PHE B 549 0 SHEET 2 AA7 4 HIS B 553 SER B 558 -1 O VAL B 555 N GLN B 548 SHEET 3 AA7 4 ILE B 563 ASP B 567 -1 O TRP B 566 N VAL B 554 SHEET 4 AA7 4 CYS B 573 LEU B 577 -1 O LEU B 577 N ILE B 563 SHEET 1 AA8 4 THR B 584 LYS B 590 0 SHEET 2 AA8 4 ILE B 593 ASN B 598 -1 O GLY B 597 N GLY B 586 SHEET 3 AA8 4 VAL B 603 ASP B 607 -1 O TRP B 606 N LEU B 594 SHEET 4 AA8 4 GLN B 612 LEU B 617 -1 O LEU B 617 N VAL B 603 SHEET 1 AA9 4 VAL B 627 PHE B 632 0 SHEET 2 AA9 4 PHE B 636 SER B 641 -1 O ILE B 638 N GLN B 631 SHEET 3 AA9 4 THR B 645 ASP B 650 -1 O TRP B 649 N VAL B 637 SHEET 4 AA9 4 PHE B 656 THR B 662 -1 O ARG B 658 N LEU B 648 LINK C PRO C 57 N TPO C 58 1555 1555 1.32 LINK C TPO C 58 N PRO C 59 1555 1555 1.34 LINK C LEU C 61 N SEP C 62 1555 1555 1.33 CRYST1 232.869 232.869 107.161 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004294 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009332 0.00000