HEADER HYDROLASE 17-DEC-21 7T8Y TITLE STRUCTURE OF CLASS A SORTASE FROM STREPTOCOCCUS PYOGENES BOUND TO TITLE 2 LIPID II MIMETIC, LPATA: THR-IN CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SORTASE A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BE2-LEU-PRO-ALA-THR-ALA-ALA; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ACE-ALA-ZGL-LYS-DAL-DAL; COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 1314; SOURCE 4 GENE: SRTA_1, SRTA, SRTA_2, E0F66_05345, E0F67_00760, FGO82_09960, SOURCE 5 FNL90_04725, FNL91_04720, GQ677_05600, GQR49_04420, GQY92_04850, SOURCE 6 GTK43_04765, GTK52_04270, GTK54_03910, GUA39_04435, IB935_04675, SOURCE 7 IB936_04605, IB937_04535, IB938_05195, KUN2590_09100, KUN4944_08330, SOURCE 8 SAMEA1407055_00305, SAMEA1711581_00311, SAMEA1711644_00960, SOURCE 9 SPNIH34_10200, SPNIH35_09070; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET18A(+); SOURCE 13 MOL_ID: 2; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 20 ORGANISM_TAXID: 32630 KEYWDS SORTASE-FOLD, HYDROLASE, SORTASE, EIGHT-STRANDED BETA BARREL, KEYWDS 2 TRANSPEPTIDASE, HOUSEKEEPING SORTASE, SURFACE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.M.PIPER,J.M.ANTOS,J.F.AMACHER REVDAT 5 15-NOV-23 7T8Y 1 LINK ATOM REVDAT 4 18-OCT-23 7T8Y 1 REMARK REVDAT 3 12-OCT-22 7T8Y 1 JRNL REVDAT 2 14-SEP-22 7T8Y 1 JRNL REVDAT 1 07-SEP-22 7T8Y 0 JRNL AUTH D.A.JOHNSON,I.M.PIPER,B.A.VOGEL,S.N.JACKSON,J.E.SVENDSEN, JRNL AUTH 2 H.M.KODAMA,D.E.LEE,K.M.LINDBLOM,J.MCCARTY,J.M.ANTOS, JRNL AUTH 3 J.F.AMACHER JRNL TITL STRUCTURES OF STREPTOCOCCUS PYOGENES CLASS A SORTASE IN JRNL TITL 2 COMPLEX WITH SUBSTRATE AND PRODUCT MIMICS PROVIDE KEY JRNL TITL 3 DETAILS OF TARGET RECOGNITION. JRNL REF J.BIOL.CHEM. V. 298 02446 2022 JRNL REFN ESSN 1083-351X JRNL PMID 36055407 JRNL DOI 10.1016/J.JBC.2022.102446 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 13739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1030 - 3.0780 1.00 2773 136 0.1645 0.1821 REMARK 3 2 3.0780 - 2.4431 1.00 2638 139 0.1865 0.2211 REMARK 3 3 2.4431 - 2.1343 1.00 2595 142 0.1723 0.2158 REMARK 3 4 2.1343 - 1.9392 1.00 2604 134 0.1730 0.2121 REMARK 3 5 1.9392 - 1.8002 0.96 2445 133 0.2054 0.2623 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1325 REMARK 3 ANGLE : 1.135 1797 REMARK 3 CHIRALITY : 0.080 208 REMARK 3 PLANARITY : 0.006 232 REMARK 3 DIHEDRAL : 19.180 756 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7T8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1000261806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25396 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 45.103 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.870 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 15.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53000 REMARK 200 FOR SHELL : 2.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3FN5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M NA ACETATE, 26% PEG 8000, 0.1 M REMARK 280 TRIS PH 6, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.15100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.12550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.86650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.12550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.15100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.86650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE LIPID II MIMETIC, LPATA IS PEPTIDE-LIKE, A MEMBER OF INHIBITOR REMARK 400 CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: LIPID II MIMETIC, LPATA REMARK 400 CHAIN: B, D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 COMPONENT_2: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 80 REMARK 465 SER A 81 REMARK 465 VAL A 82 REMARK 465 LEU A 83 REMARK 465 GLN A 84 REMARK 465 ALA A 85 REMARK 465 GLN A 86 REMARK 465 MET A 87 REMARK 465 ALA A 88 REMARK 465 ALA A 89 REMARK 465 GLN A 90 REMARK 465 GLN A 91 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 208 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 336 O HOH A 383 1.88 REMARK 500 O HOH A 346 O HOH A 408 1.89 REMARK 500 OE1 GLU A 102 O HOH A 301 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 396 O HOH A 399 3557 2.00 REMARK 500 O HOH A 365 O HOH A 386 3547 2.04 REMARK 500 O HOH A 327 O HOH A 399 3557 2.05 REMARK 500 O HOH A 330 O HOH A 411 4457 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU B 2 C PRO B 3 N 0.126 REMARK 500 PRO B 3 N PRO B 3 CA -0.133 REMARK 500 PRO B 3 CD PRO B 3 N 0.142 REMARK 500 PRO B 3 C ALA B 4 N 0.139 REMARK 500 LYS D 4 C DAL D 5 N 0.152 REMARK 500 DAL D 5 C DAL D 6 N 0.151 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 BE2 B 1 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 ZGL D 3 CA - C - N ANGL. DEV. = -27.3 DEGREES REMARK 500 DAL D 5 N - CA - CB ANGL. DEV. = -9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 154 -127.19 52.68 REMARK 500 LYS A 172 -3.84 72.02 REMARK 500 ZGL D 3 -111.32 -81.84 REMARK 500 LYS D 4 20.05 -3.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ZGL D 3 LYS D 4 -133.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 BE2 B 1 -10.61 REMARK 500 ZGL D 3 17.49 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7T8Y A 81 249 UNP A0A4U7I1I9_STRPY DBREF2 7T8Y A A0A4U7I1I9 81 249 DBREF 7T8Y B 1 7 PDB 7T8Y 7T8Y 1 7 DBREF 7T8Y D 1 6 PDB 7T8Y 7T8Y 1 6 SEQADV 7T8Y SER A 80 UNP A0A4U7I1I EXPRESSION TAG SEQRES 1 A 170 SER SER VAL LEU GLN ALA GLN MET ALA ALA GLN GLN LEU SEQRES 2 A 170 PRO VAL ILE GLY GLY ILE ALA ILE PRO GLU LEU GLY ILE SEQRES 3 A 170 ASN LEU PRO ILE PHE LYS GLY LEU GLY ASN THR GLU LEU SEQRES 4 A 170 ILE TYR GLY ALA GLY THR MET LYS GLU GLU GLN VAL MET SEQRES 5 A 170 GLY GLY GLU ASN ASN TYR SER LEU ALA SER HIS HIS ILE SEQRES 6 A 170 PHE GLY ILE THR GLY SER SER GLN MET LEU PHE SER PRO SEQRES 7 A 170 LEU GLU ARG ALA GLN ASN GLY MET SER ILE TYR LEU THR SEQRES 8 A 170 ASP LYS GLU LYS ILE TYR GLU TYR ILE ILE LYS ASP VAL SEQRES 9 A 170 PHE THR VAL ALA PRO GLU ARG VAL ASP VAL ILE ASP ASP SEQRES 10 A 170 THR ALA GLY LEU LYS GLU VAL THR LEU VAL THR CYS THR SEQRES 11 A 170 ASP ILE GLU ALA THR GLU ARG ILE ILE VAL LYS GLY GLU SEQRES 12 A 170 LEU LYS THR GLU TYR ASP PHE ASP LYS ALA PRO ALA ASP SEQRES 13 A 170 VAL LEU LYS ALA PHE ASN HIS SER TYR ASN GLN VAL SER SEQRES 14 A 170 THR SEQRES 1 B 7 BE2 LEU PRO ALA THR ALA ALA SEQRES 1 D 6 ACE ALA ZGL LYS DAL DAL HET BE2 B 1 9 HET ACE D 1 3 HET ZGL D 3 9 HET DAL D 5 5 HET DAL D 6 6 HETNAM BE2 2-AMINOBENZOIC ACID HETNAM ACE ACETYL GROUP HETNAM ZGL D-ALPHA-GLUTAMINE HETNAM DAL D-ALANINE HETSYN ZGL ISO-D-GLUTAMINE FORMUL 2 BE2 C7 H7 N O2 FORMUL 3 ACE C2 H4 O FORMUL 3 ZGL C5 H10 N2 O3 FORMUL 3 DAL 2(C3 H7 N O2) FORMUL 4 HOH *129(H2 O) HELIX 1 AA1 PRO A 101 GLY A 104 5 4 HELIX 2 AA2 GLY A 114 GLY A 121 1 8 HELIX 3 AA3 GLY A 149 MET A 153 5 5 HELIX 4 AA4 PHE A 155 ALA A 161 5 7 HELIX 5 AA5 ARG A 190 ASP A 195 5 6 HELIX 6 AA6 ASP A 230 ALA A 232 5 3 HELIX 7 AA7 PRO A 233 HIS A 242 1 10 SHEET 1 AA1 9 GLY A 96 ILE A 100 0 SHEET 2 AA1 9 ILE A 105 PHE A 110 -1 O ILE A 105 N ILE A 100 SHEET 3 AA1 9 ALA A 122 THR A 124 1 O ALA A 122 N PHE A 110 SHEET 4 AA1 9 ASN A 136 ALA A 140 -1 O ALA A 140 N GLY A 123 SHEET 5 AA1 9 GLU A 202 CYS A 208 1 O THR A 204 N LEU A 139 SHEET 6 AA1 9 ARG A 216 ASP A 228 -1 O ILE A 217 N THR A 207 SHEET 7 AA1 9 LYS A 174 VAL A 186 -1 N PHE A 184 O ILE A 218 SHEET 8 AA1 9 SER A 166 THR A 170 -1 N ILE A 167 O TYR A 178 SHEET 9 AA1 9 GLY A 96 ILE A 100 -1 N ALA A 99 O TYR A 168 SHEET 1 AA2 2 HIS A 143 ILE A 144 0 SHEET 2 AA2 2 ALA B 6 ALA B 7 1 O ALA B 7 N HIS A 143 LINK C BE2 B 1 N LEU B 2 1555 1555 1.47 LINK C ACE D 1 N ALA D 2 1555 1555 1.46 LINK C ALA D 2 N ZGL D 3 1555 1555 1.47 LINK C ZGL D 3 N LYS D 4 1555 1555 1.47 LINK C LYS D 4 N DAL D 5 1555 1555 1.49 LINK C DAL D 5 N DAL D 6 1555 1555 1.49 CISPEP 1 DAL D 5 DAL D 6 0 3.64 CRYST1 34.302 57.733 72.251 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029153 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013841 0.00000