HEADER SIGNALING PROTEIN 20-DEC-21 7TA3 TITLE TRIMER-TO-MONOMER DISRUPTION OF TUMOR NECROSIS FACTOR-ALPHA (TNF- TITLE 2 ALPHA) BY ALPHA-PEPTIDE-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-PEPTIDE-3; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TUMOR NECROSIS FACTOR; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: CACHECTIN,TNF-ALPHA,TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY COMPND 9 MEMBER 2,TNF-A; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: TNF, TNFA, TNFSF2; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TUMOR NECROSIS FACTOR-ALPHA, SIGNALING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.NIU,C.A.BINGMAN,S.H.GELLMAN REVDAT 2 03-APR-24 7TA3 1 REMARK REVDAT 1 29-JUN-22 7TA3 0 JRNL AUTH J.NIU,A.J.CEDERSTRAND,G.A.EDDINGER,B.YIN,J.W.CHECCO, JRNL AUTH 2 C.A.BINGMAN,V.K.OUTLAW,S.H.GELLMAN JRNL TITL TRIMER-TO-MONOMER DISRUPTION MECHANISM FOR A POTENT, JRNL TITL 2 PROTEASE-RESISTANT ANTAGONIST OF TUMOR NECROSIS FACTOR-ALPHA JRNL TITL 3 SIGNALING. JRNL REF J.AM.CHEM.SOC. V. 144 9610 2022 JRNL REFN ESSN 1520-5126 JRNL PMID 35613436 JRNL DOI 10.1021/JACS.1C13717 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2800 - 6.0200 0.99 1347 194 0.2356 0.2164 REMARK 3 2 6.0200 - 4.7800 1.00 1340 97 0.2232 0.2541 REMARK 3 3 4.7800 - 4.1800 1.00 1276 145 0.1843 0.2457 REMARK 3 4 4.1800 - 3.8000 1.00 1260 146 0.2182 0.2567 REMARK 3 5 3.8000 - 3.5200 1.00 1305 97 0.2414 0.3126 REMARK 3 6 3.5200 - 3.3200 1.00 1189 194 0.2605 0.3122 REMARK 3 7 3.3200 - 3.1500 1.00 1284 97 0.2871 0.3228 REMARK 3 8 3.1500 - 3.0100 1.00 1189 194 0.3019 0.3627 REMARK 3 9 3.0100 - 2.9000 0.99 1260 96 0.3352 0.3830 REMARK 3 10 2.9000 - 2.8000 1.00 1271 97 0.3427 0.4371 REMARK 3 11 2.8000 - 2.7100 0.99 1162 192 0.3311 0.3361 REMARK 3 12 2.7100 - 2.6300 1.00 1289 97 0.3385 0.3711 REMARK 3 13 2.6300 - 2.5600 0.99 1150 193 0.3626 0.3924 REMARK 3 14 2.5600 - 2.5000 0.99 1267 95 0.4003 0.4495 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 98.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0340 -52.6812 -21.6957 REMARK 3 T TENSOR REMARK 3 T11: 1.1050 T22: 0.8479 REMARK 3 T33: 0.8658 T12: 0.0496 REMARK 3 T13: 0.0228 T23: -0.0556 REMARK 3 L TENSOR REMARK 3 L11: 0.3659 L22: 0.1767 REMARK 3 L33: 0.1839 L12: 0.1530 REMARK 3 L13: 0.2198 L23: 0.1107 REMARK 3 S TENSOR REMARK 3 S11: 0.1323 S12: -0.3429 S13: -0.2660 REMARK 3 S21: -0.9635 S22: 0.1076 S23: 0.8336 REMARK 3 S31: -1.9939 S32: -0.1370 S33: 0.0029 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3481 -58.0916 -25.0202 REMARK 3 T TENSOR REMARK 3 T11: 0.9555 T22: 1.1296 REMARK 3 T33: 0.9880 T12: -0.0626 REMARK 3 T13: -0.1495 T23: 0.0948 REMARK 3 L TENSOR REMARK 3 L11: 0.0480 L22: 0.0216 REMARK 3 L33: -0.0270 L12: 0.0066 REMARK 3 L13: 0.0025 L23: -0.0433 REMARK 3 S TENSOR REMARK 3 S11: 0.6824 S12: -0.3524 S13: 1.0482 REMARK 3 S21: 0.7463 S22: -1.5802 S23: -1.2599 REMARK 3 S31: -0.9290 S32: 0.8144 S33: -0.0046 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1220 -60.1081 -15.2040 REMARK 3 T TENSOR REMARK 3 T11: 1.1211 T22: 0.7187 REMARK 3 T33: 0.8525 T12: -0.1427 REMARK 3 T13: -0.1090 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.4015 L22: 2.1533 REMARK 3 L33: 1.3162 L12: 1.4823 REMARK 3 L13: 0.7138 L23: -0.1558 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.8676 S13: -0.0636 REMARK 3 S21: 1.4804 S22: -0.3688 S23: -0.8416 REMARK 3 S31: -0.5271 S32: -0.6037 S33: -0.0020 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4588 -65.3435 -28.1643 REMARK 3 T TENSOR REMARK 3 T11: 0.6535 T22: 0.6277 REMARK 3 T33: 0.7299 T12: -0.0311 REMARK 3 T13: 0.0035 T23: -0.0570 REMARK 3 L TENSOR REMARK 3 L11: 1.5274 L22: 4.0166 REMARK 3 L33: 2.8136 L12: 0.0090 REMARK 3 L13: -0.4878 L23: -0.1078 REMARK 3 S TENSOR REMARK 3 S11: 0.0662 S12: 0.1488 S13: -0.1992 REMARK 3 S21: 0.0092 S22: 0.0148 S23: 0.0050 REMARK 3 S31: 0.0111 S32: -0.0519 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7684 -67.9600 -21.5036 REMARK 3 T TENSOR REMARK 3 T11: 0.7672 T22: 0.6617 REMARK 3 T33: 0.7014 T12: -0.0213 REMARK 3 T13: 0.0855 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 4.0469 L22: 0.3235 REMARK 3 L33: 2.6091 L12: 0.4165 REMARK 3 L13: 0.8095 L23: 0.2463 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: -0.3789 S13: -0.2223 REMARK 3 S21: 0.6072 S22: 0.0867 S23: -0.6784 REMARK 3 S31: 0.2138 S32: -0.5490 S33: -0.0004 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7980 -60.2568 -25.6709 REMARK 3 T TENSOR REMARK 3 T11: 0.7915 T22: 0.6297 REMARK 3 T33: 0.6935 T12: -0.0267 REMARK 3 T13: 0.0396 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 3.4908 L22: 2.2345 REMARK 3 L33: 2.2063 L12: -1.9751 REMARK 3 L13: 0.6900 L23: -0.7849 REMARK 3 S TENSOR REMARK 3 S11: 0.0742 S12: 0.0817 S13: 0.1833 REMARK 3 S21: 0.1883 S22: -0.0586 S23: -0.0510 REMARK 3 S31: 0.0042 S32: -0.2273 S33: 0.0004 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.9646 -86.7105 -9.9183 REMARK 3 T TENSOR REMARK 3 T11: 0.9551 T22: 0.8278 REMARK 3 T33: 1.0047 T12: 0.0397 REMARK 3 T13: -0.0401 T23: -0.0616 REMARK 3 L TENSOR REMARK 3 L11: 0.3233 L22: 1.0746 REMARK 3 L33: 0.4578 L12: 0.3242 REMARK 3 L13: 0.2685 L23: -0.1054 REMARK 3 S TENSOR REMARK 3 S11: 0.9762 S12: -0.3985 S13: -1.7034 REMARK 3 S21: 0.2625 S22: 0.3519 S23: 0.6343 REMARK 3 S31: 0.3946 S32: 0.1769 S33: -0.0008 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 12 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.9213 -84.1321 -0.2023 REMARK 3 T TENSOR REMARK 3 T11: 0.9437 T22: 1.7993 REMARK 3 T33: 0.9190 T12: -0.1701 REMARK 3 T13: 0.2254 T23: -0.0824 REMARK 3 L TENSOR REMARK 3 L11: 0.2762 L22: 0.2834 REMARK 3 L33: 0.2242 L12: 0.0590 REMARK 3 L13: 0.0160 L23: -0.1658 REMARK 3 S TENSOR REMARK 3 S11: 0.9400 S12: -0.1935 S13: 1.0492 REMARK 3 S21: 1.4085 S22: 0.5010 S23: -0.3926 REMARK 3 S31: -1.1953 S32: 0.7529 S33: -0.0031 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 17 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5327 -80.1104 -2.1138 REMARK 3 T TENSOR REMARK 3 T11: 1.1149 T22: 0.8634 REMARK 3 T33: 0.7838 T12: -0.1595 REMARK 3 T13: 0.0879 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 1.2524 L22: 1.7500 REMARK 3 L33: 1.4158 L12: 1.3030 REMARK 3 L13: 0.7898 L23: -0.3694 REMARK 3 S TENSOR REMARK 3 S11: 0.6828 S12: -0.9384 S13: 0.2114 REMARK 3 S21: 0.8982 S22: -0.0988 S23: -0.3738 REMARK 3 S31: 0.1747 S32: -0.7352 S33: 0.0018 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 9 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.7802 -75.4036 -14.8067 REMARK 3 T TENSOR REMARK 3 T11: 0.8243 T22: 0.7727 REMARK 3 T33: 0.9223 T12: 0.0410 REMARK 3 T13: 0.1537 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 2.8910 L22: 2.6364 REMARK 3 L33: 1.2946 L12: -0.4637 REMARK 3 L13: -0.8826 L23: -1.6803 REMARK 3 S TENSOR REMARK 3 S11: 0.5261 S12: 0.1223 S13: 0.2516 REMARK 3 S21: 0.3198 S22: 0.0415 S23: 0.7871 REMARK 3 S31: -0.6918 S32: -0.6516 S33: -0.0036 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 28 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.0191 -75.9643 -10.0836 REMARK 3 T TENSOR REMARK 3 T11: 1.0490 T22: 1.2202 REMARK 3 T33: 1.4571 T12: -0.0143 REMARK 3 T13: 0.0904 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 0.1241 L22: 0.3512 REMARK 3 L33: 0.7651 L12: 0.1145 REMARK 3 L13: 0.3059 L23: 0.3621 REMARK 3 S TENSOR REMARK 3 S11: 1.2017 S12: -0.6093 S13: -0.3507 REMARK 3 S21: 0.2742 S22: -0.4163 S23: 1.9814 REMARK 3 S31: 1.1248 S32: -1.7030 S33: 0.0305 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 39 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.3854 -71.0884 -13.4520 REMARK 3 T TENSOR REMARK 3 T11: 0.8539 T22: 0.7659 REMARK 3 T33: 0.8006 T12: 0.1222 REMARK 3 T13: 0.0916 T23: -0.0652 REMARK 3 L TENSOR REMARK 3 L11: 1.2040 L22: 1.8889 REMARK 3 L33: 1.0045 L12: 1.7853 REMARK 3 L13: -0.9400 L23: -0.3398 REMARK 3 S TENSOR REMARK 3 S11: 0.0880 S12: -0.2283 S13: 0.3863 REMARK 3 S21: -0.2793 S22: 0.1711 S23: 0.6790 REMARK 3 S31: -0.6965 S32: -0.0161 S33: 0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 67 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0885 -73.6458 -26.0177 REMARK 3 T TENSOR REMARK 3 T11: 0.7128 T22: 0.6386 REMARK 3 T33: 0.7482 T12: 0.0157 REMARK 3 T13: 0.0547 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 1.4857 L22: 1.1094 REMARK 3 L33: 2.7251 L12: 1.9220 REMARK 3 L13: 0.0495 L23: -0.2806 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: 0.2063 S13: 0.2210 REMARK 3 S21: 0.2030 S22: 0.1127 S23: 0.3880 REMARK 3 S31: 0.0078 S32: -0.2047 S33: 0.0004 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 99 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.4119 -94.3526 -36.4386 REMARK 3 T TENSOR REMARK 3 T11: 1.3333 T22: 0.9410 REMARK 3 T33: 0.9682 T12: -0.0267 REMARK 3 T13: 0.0400 T23: 0.0568 REMARK 3 L TENSOR REMARK 3 L11: 0.9416 L22: 0.2867 REMARK 3 L33: 0.3288 L12: -0.0055 REMARK 3 L13: 0.0699 L23: -0.3564 REMARK 3 S TENSOR REMARK 3 S11: -1.0025 S12: 0.5195 S13: -0.2636 REMARK 3 S21: -1.0522 S22: 0.2469 S23: -0.7164 REMARK 3 S31: 0.6290 S32: 0.3938 S33: 0.0007 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 114 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5010 -76.9438 -18.5186 REMARK 3 T TENSOR REMARK 3 T11: 0.8706 T22: 0.7794 REMARK 3 T33: 0.7929 T12: 0.0091 REMARK 3 T13: 0.0339 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.5234 L22: 1.4721 REMARK 3 L33: 1.1012 L12: -0.9125 REMARK 3 L13: -1.2542 L23: 0.8038 REMARK 3 S TENSOR REMARK 3 S11: 0.1304 S12: 0.0320 S13: 0.3421 REMARK 3 S21: -0.1541 S22: -0.1948 S23: 0.5033 REMARK 3 S31: -0.0022 S32: -0.4046 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1000261918. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12713 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MAR 15, 2019 REMARK 200 DATA SCALING SOFTWARE : XSCALE MAR 15, 2019 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19636 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 26.40 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.54 REMARK 200 R MERGE FOR SHELL (I) : 1.85000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 1TNF_A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULFATE, 0.1 M TRIS HCL REMARK 280 PH 8.5, 12% GLYCEROL, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.86500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.28000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.79750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.28000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.93250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.28000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.28000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 107.79750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.28000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.28000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.93250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.86500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 0 REMARK 465 VAL B 1 REMARK 465 ARG B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 ARG B 6 REMARK 465 THR B 7 REMARK 465 ARG B 103 REMARK 465 GLU B 104 REMARK 465 THR B 105 REMARK 465 PRO B 106 REMARK 465 GLU B 107 REMARK 465 GLY B 108 REMARK 465 ALA B 109 REMARK 465 GLU B 110 REMARK 465 SER D 0 REMARK 465 VAL D 1 REMARK 465 ARG D 2 REMARK 465 SER D 3 REMARK 465 SER D 4 REMARK 465 SER D 5 REMARK 465 ARG D 6 REMARK 465 THR D 7 REMARK 465 PRO D 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 31 CG CD NE CZ NH1 NH2 REMARK 470 THR B 72 OG1 CG2 REMARK 470 GLN B 88 CG CD OE1 NE2 REMARK 470 GLN B 102 CG CD OE1 NE2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 GLU C 1 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN C 18 OG SER D 9 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 34 33.23 -146.71 REMARK 500 SER B 60 146.36 -170.74 REMARK 500 HIS B 73 98.21 -64.21 REMARK 500 ARG D 32 -124.39 37.76 REMARK 500 LEU D 37 70.30 -153.74 REMARK 500 THR D 89 147.50 -170.09 REMARK 500 TYR D 115 119.59 -160.71 REMARK 500 REMARK 500 REMARK: NULL DBREF 7TA3 A 1 32 PDB 7TA3 7TA3 1 32 DBREF 7TA3 B 1 157 UNP P01375 TNFA_HUMAN 77 233 DBREF 7TA3 C 1 32 PDB 7TA3 7TA3 1 32 DBREF 7TA3 D 1 157 UNP P01375 TNFA_HUMAN 77 233 SEQADV 7TA3 SER B 0 UNP P01375 EXPRESSION TAG SEQADV 7TA3 SER D 0 UNP P01375 EXPRESSION TAG SEQRES 1 A 32 GLU CYS GLY TRP ARG ILE GLY GLU ALA GLY THR ASP PRO SEQRES 2 A 32 ASN LEU ASN HIS GLN GLN PHE ARG ALA LYS ILE LEU SER SEQRES 3 A 32 ILE TRP GLU GLU CYS NH2 SEQRES 1 B 158 SER VAL ARG SER SER SER ARG THR PRO SER ASP LYS PRO SEQRES 2 B 158 VAL ALA HIS VAL VAL ALA ASN PRO GLN ALA GLU GLY GLN SEQRES 3 B 158 LEU GLN TRP LEU ASN ARG ARG ALA ASN ALA LEU LEU ALA SEQRES 4 B 158 ASN GLY VAL GLU LEU ARG ASP ASN GLN LEU VAL VAL PRO SEQRES 5 B 158 SER GLU GLY LEU TYR LEU ILE TYR SER GLN VAL LEU PHE SEQRES 6 B 158 LYS GLY GLN GLY CYS PRO SER THR HIS VAL LEU LEU THR SEQRES 7 B 158 HIS THR ILE SER ARG ILE ALA VAL SER TYR GLN THR LYS SEQRES 8 B 158 VAL ASN LEU LEU SER ALA ILE LYS SER PRO CYS GLN ARG SEQRES 9 B 158 GLU THR PRO GLU GLY ALA GLU ALA LYS PRO TRP TYR GLU SEQRES 10 B 158 PRO ILE TYR LEU GLY GLY VAL PHE GLN LEU GLU LYS GLY SEQRES 11 B 158 ASP ARG LEU SER ALA GLU ILE ASN ARG PRO ASP TYR LEU SEQRES 12 B 158 ASP PHE ALA GLU SER GLY GLN VAL TYR PHE GLY ILE ILE SEQRES 13 B 158 ALA LEU SEQRES 1 C 32 GLU CYS GLY TRP ARG ILE GLY GLU ALA GLY THR ASP PRO SEQRES 2 C 32 ASN LEU ASN HIS GLN GLN PHE ARG ALA LYS ILE LEU SER SEQRES 3 C 32 ILE TRP GLU GLU CYS NH2 SEQRES 1 D 158 SER VAL ARG SER SER SER ARG THR PRO SER ASP LYS PRO SEQRES 2 D 158 VAL ALA HIS VAL VAL ALA ASN PRO GLN ALA GLU GLY GLN SEQRES 3 D 158 LEU GLN TRP LEU ASN ARG ARG ALA ASN ALA LEU LEU ALA SEQRES 4 D 158 ASN GLY VAL GLU LEU ARG ASP ASN GLN LEU VAL VAL PRO SEQRES 5 D 158 SER GLU GLY LEU TYR LEU ILE TYR SER GLN VAL LEU PHE SEQRES 6 D 158 LYS GLY GLN GLY CYS PRO SER THR HIS VAL LEU LEU THR SEQRES 7 D 158 HIS THR ILE SER ARG ILE ALA VAL SER TYR GLN THR LYS SEQRES 8 D 158 VAL ASN LEU LEU SER ALA ILE LYS SER PRO CYS GLN ARG SEQRES 9 D 158 GLU THR PRO GLU GLY ALA GLU ALA LYS PRO TRP TYR GLU SEQRES 10 D 158 PRO ILE TYR LEU GLY GLY VAL PHE GLN LEU GLU LYS GLY SEQRES 11 D 158 ASP ARG LEU SER ALA GLU ILE ASN ARG PRO ASP TYR LEU SEQRES 12 D 158 ASP PHE ALA GLU SER GLY GLN VAL TYR PHE GLY ILE ILE SEQRES 13 D 158 ALA LEU HET NH2 A 32 3 HET NH2 C 32 3 HETNAM NH2 AMINO GROUP FORMUL 1 NH2 2(H2 N) FORMUL 5 HOH *13(H2 O) HELIX 1 AA1 GLU A 1 THR A 11 1 11 HELIX 2 AA2 ASN A 16 CYS A 31 1 16 HELIX 3 AA3 ARG B 31 ALA B 33 5 3 HELIX 4 AA4 ARG B 138 LEU B 142 5 5 HELIX 5 AA5 CYS C 2 ASP C 12 1 11 HELIX 6 AA6 ASN C 16 GLU C 30 1 15 HELIX 7 AA7 GLY D 108 LYS D 112 5 5 HELIX 8 AA8 ARG D 138 LEU D 142 5 5 SHEET 1 AA1 5 ALA B 35 ALA B 38 0 SHEET 2 AA1 5 VAL B 13 VAL B 17 -1 N HIS B 15 O LEU B 36 SHEET 3 AA1 5 TYR B 151 ALA B 156 -1 O PHE B 152 N VAL B 16 SHEET 4 AA1 5 GLY B 54 GLY B 66 -1 N LEU B 57 O ILE B 155 SHEET 5 AA1 5 TRP B 114 LEU B 126 -1 O LEU B 120 N SER B 60 SHEET 1 AA210 GLU B 42 ARG B 44 0 SHEET 2 AA210 GLN B 47 VAL B 49 -1 O GLN B 47 N ARG B 44 SHEET 3 AA210 ARG B 131 ILE B 136 -1 O LEU B 132 N LEU B 48 SHEET 4 AA210 LEU B 76 ILE B 83 -1 N THR B 79 O GLU B 135 SHEET 5 AA210 LYS B 90 LYS B 98 -1 O VAL B 91 N ARG B 82 SHEET 6 AA210 LYS D 90 CYS D 101 -1 O SER D 95 N LYS B 90 SHEET 7 AA210 VAL D 74 ILE D 83 -1 N LEU D 76 O LYS D 98 SHEET 8 AA210 ARG D 131 ILE D 136 -1 O GLU D 135 N THR D 79 SHEET 9 AA210 LEU D 48 VAL D 49 -1 N LEU D 48 O LEU D 132 SHEET 10 AA210 GLU D 42 LEU D 43 -1 N GLU D 42 O VAL D 49 SHEET 1 AA3 3 TRP D 28 LEU D 29 0 SHEET 2 AA3 3 VAL D 13 ALA D 18 -1 N VAL D 17 O LEU D 29 SHEET 3 AA3 3 LEU D 36 ALA D 38 -1 O LEU D 36 N HIS D 15 SHEET 1 AA4 5 TRP D 28 LEU D 29 0 SHEET 2 AA4 5 VAL D 13 ALA D 18 -1 N VAL D 17 O LEU D 29 SHEET 3 AA4 5 TYR D 151 ALA D 156 -1 O PHE D 152 N VAL D 16 SHEET 4 AA4 5 GLY D 54 GLY D 66 -1 N LEU D 57 O ILE D 155 SHEET 5 AA4 5 TRP D 114 LEU D 126 -1 O GLY D 122 N ILE D 58 SSBOND 1 CYS A 2 CYS A 31 1555 1555 2.03 SSBOND 2 CYS B 69 CYS B 101 1555 1555 2.03 SSBOND 3 CYS C 2 CYS C 31 1555 1555 2.03 SSBOND 4 CYS D 69 CYS D 101 1555 1555 2.03 LINK C CYS A 31 N NH2 A 32 1555 1555 1.33 LINK C CYS C 31 N NH2 C 32 1555 1555 1.33 CRYST1 86.560 86.560 143.730 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011553 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006957 0.00000