HEADER TRANSFERASE/INHIBITOR 21-DEC-21 7TAZ TITLE CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH TITLE 2 VM-1500A, A NON-NUCLEOSIDE RT INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EXORIBONUCLEASE H, P66 RT; COMPND 5 EC: 2.7.7.49,2.7.7.7,3.1.26.13,3.1.13.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: REVERSE TRANSCRIPTASE P51; COMPND 10 CHAIN: B; COMPND 11 EC: 2.7.7.49; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET52A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 11 ORGANISM_TAXID: 11676; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET52A KEYWDS REVERSE TRANSCRIPTASE, HIV-1, POLYMERASE, NNRTI, VM-1500, KEYWDS 2 ELSULFAVIRINE, VIRAL PROTEIN, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.A.SNYDER,C.J.RISENER,K.A.KIRBY,S.G.SARAFIANOS REVDAT 2 25-OCT-23 7TAZ 1 REMARK REVDAT 1 12-APR-23 7TAZ 0 JRNL AUTH A.A.SNYDER,C.J.RISENER,K.A.KIRBY,S.G.STEFAN JRNL TITL CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN JRNL TITL 2 COMPLEX WITH VM-1500A, A NON-NUCLEOSIDE RT INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 47489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2478 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3468 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3480 REMARK 3 BIN FREE R VALUE SET COUNT : 191 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7955 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.54000 REMARK 3 B22 (A**2) : -0.73000 REMARK 3 B33 (A**2) : 3.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.81000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.415 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.241 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.971 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8245 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7743 ; 0.034 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11217 ; 1.532 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18103 ; 2.245 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 977 ; 7.662 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 394 ;35.528 ;24.112 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1500 ;17.056 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;14.700 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1061 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8930 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1592 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 554 REMARK 3 RESIDUE RANGE : A 601 A 601 REMARK 3 ORIGIN FOR THE GROUP (A): 35.471 -13.036 33.847 REMARK 3 T TENSOR REMARK 3 T11: 0.0366 T22: 0.0196 REMARK 3 T33: 0.0425 T12: -0.0013 REMARK 3 T13: 0.0058 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.0740 L22: 0.0212 REMARK 3 L33: 0.1076 L12: 0.0050 REMARK 3 L13: 0.0707 L23: -0.0066 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: -0.0085 S13: -0.0405 REMARK 3 S21: 0.0235 S22: 0.0097 S23: 0.0174 REMARK 3 S31: 0.0259 S32: -0.0354 S33: -0.0420 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 428 REMARK 3 ORIGIN FOR THE GROUP (A): 50.047 15.607 23.119 REMARK 3 T TENSOR REMARK 3 T11: 0.0397 T22: 0.0127 REMARK 3 T33: 0.0165 T12: -0.0154 REMARK 3 T13: 0.0013 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.2641 L22: 0.1443 REMARK 3 L33: 0.2692 L12: -0.0871 REMARK 3 L13: 0.2214 L23: -0.1219 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: 0.0512 S13: 0.0335 REMARK 3 S21: 0.0744 S22: -0.0305 S23: -0.0050 REMARK 3 S31: -0.0485 S32: 0.0530 S33: 0.0567 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7TAZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1000261907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03321 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 31, 2020 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 31, 2020 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49968 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.76900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 4G1Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8,000, AMMONIUM SULFATE, BIS TRIS REMARK 280 PROPANE, ETHYLENE GLYCOL, PH 6.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.52500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.93500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.52500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.93500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 555 REMARK 465 GLY B 0 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 THR B 216 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 224 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 VAL A 60 NZ LYS A 73 1.50 REMARK 500 CE LYS B 102 O HOH B 568 1.80 REMARK 500 CD LYS B 102 O HOH B 568 1.86 REMARK 500 OD1 ASP A 110 O HOH A 701 1.88 REMARK 500 O GLU B 248 O HOH B 501 1.93 REMARK 500 CG2 VAL A 60 CE LYS A 73 1.96 REMARK 500 N LEU A 74 O HOH A 702 2.01 REMARK 500 CD LYS A 73 O HOH A 702 2.15 REMARK 500 OD2 ASP A 320 CE LYS A 323 2.16 REMARK 500 OH TYR B 339 OE1 GLU B 378 2.17 REMARK 500 NE2 GLN A 91 OH TYR A 183 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 194 NZ LYS B 172 1545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 66 CB - CA - C ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 156.92 -49.64 REMARK 500 PRO A 14 99.97 -68.97 REMARK 500 ASN A 54 108.60 -48.04 REMARK 500 THR A 69 67.42 -62.27 REMARK 500 MET A 184 -122.40 38.83 REMARK 500 HIS A 221 125.05 -39.51 REMARK 500 LYS A 223 109.17 -59.73 REMARK 500 PRO A 243 130.14 -35.06 REMARK 500 ILE A 270 -33.98 -131.67 REMARK 500 ARG A 284 109.54 -58.86 REMARK 500 LYS A 287 74.83 -105.65 REMARK 500 PHE A 346 -2.65 81.13 REMARK 500 PRO A 420 155.16 -48.34 REMARK 500 ASN A 471 45.06 70.74 REMARK 500 THR B 7 -169.41 -71.74 REMARK 500 PRO B 14 -100.84 -6.60 REMARK 500 ASP B 67 71.19 35.41 REMARK 500 SER B 68 -43.18 -134.86 REMARK 500 PRO B 95 107.60 -54.60 REMARK 500 PRO B 97 96.58 -67.90 REMARK 500 MET B 184 -121.65 48.61 REMARK 500 THR B 286 55.97 -101.74 REMARK 500 PHE B 346 5.54 82.62 REMARK 500 LYS B 347 79.61 -117.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 288 LEU A 289 -147.52 REMARK 500 MET B 357 ARG B 358 -149.24 REMARK 500 REMARK 500 REMARK: NULL DBREF 7TAZ A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 7TAZ B 1 428 UNP P03366 POL_HV1B1 600 1027 SEQADV 7TAZ MET A -1 UNP P03366 EXPRESSION TAG SEQADV 7TAZ VAL A 0 UNP P03366 EXPRESSION TAG SEQADV 7TAZ ALA A 172 UNP P03366 LYS 771 ENGINEERED MUTATION SEQADV 7TAZ ALA A 173 UNP P03366 LYS 772 ENGINEERED MUTATION SEQADV 7TAZ SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 7TAZ GLY B 0 UNP P03366 EXPRESSION TAG SEQADV 7TAZ SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQRES 1 A 557 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 A 557 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 A 557 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 A 557 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 A 557 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 A 557 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 A 557 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 A 557 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 A 557 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 A 557 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 A 557 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 A 557 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 A 557 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 A 557 LEU GLU PRO PHE ALA ALA GLN ASN PRO ASP ILE VAL ILE SEQRES 15 A 557 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 A 557 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 A 557 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 A 557 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 A 557 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 A 557 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN SEQRES 21 A 557 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 A 557 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 A 557 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 A 557 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 A 557 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 A 557 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 A 557 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 A 557 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 A 557 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 A 557 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 A 557 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 A 557 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 A 557 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 A 557 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 A 557 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 A 557 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 A 557 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 A 557 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 A 557 VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE SEQRES 40 A 557 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 A 557 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 A 557 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 A 557 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 429 GLY PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU SEQRES 2 B 429 LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO SEQRES 3 B 429 LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS SEQRES 4 B 429 THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY SEQRES 5 B 429 PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS SEQRES 6 B 429 LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE SEQRES 7 B 429 ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL SEQRES 8 B 429 GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS SEQRES 9 B 429 LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SEQRES 10 B 429 SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA SEQRES 11 B 429 PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE SEQRES 12 B 429 ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SEQRES 13 B 429 SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU SEQRES 14 B 429 GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR SEQRES 15 B 429 GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU SEQRES 16 B 429 ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN SEQRES 17 B 429 HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS SEQRES 18 B 429 HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU SEQRES 19 B 429 LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU SEQRES 20 B 429 PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS SEQRES 21 B 429 LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO SEQRES 22 B 429 GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY SEQRES 23 B 429 THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU SEQRES 24 B 429 ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS SEQRES 25 B 429 GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP SEQRES 26 B 429 LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP SEQRES 27 B 429 THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS SEQRES 28 B 429 THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN SEQRES 29 B 429 ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR SEQRES 30 B 429 THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE SEQRES 31 B 429 LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP SEQRES 32 B 429 THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU SEQRES 33 B 429 PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN HET VM5 A 601 33 HETNAM VM5 2-[4-BROMO-3-(3-CHLORO-5-CYANOPHENOXY)-2-FLUOROPHENYL]- HETNAM 2 VM5 N-(2-CHLORO-4-SULFAMOYLPHENYL)ACETAMIDE FORMUL 3 VM5 C21 H13 BR CL2 F N3 O4 S FORMUL 4 HOH *276(H2 O) HELIX 1 AA1 THR A 27 LYS A 43 1 17 HELIX 2 AA2 PHE A 77 LYS A 82 1 6 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 ASP A 121 LYS A 126 1 6 HELIX 5 AA5 TYR A 127 ALA A 129 5 3 HELIX 6 AA6 SER A 134 GLU A 138 5 5 HELIX 7 AA7 GLY A 155 ASN A 175 1 21 HELIX 8 AA8 GLU A 194 ARG A 211 1 18 HELIX 9 AA9 LYS A 259 SER A 268 1 10 HELIX 10 AB1 VAL A 276 LYS A 281 1 6 HELIX 11 AB2 GLU A 302 LEU A 310 1 9 HELIX 12 AB3 ASN A 363 GLY A 384 1 22 HELIX 13 AB4 GLN A 394 TYR A 405 1 12 HELIX 14 AB5 THR A 473 SER A 489 1 17 HELIX 15 AB6 SER A 499 GLN A 507 1 9 HELIX 16 AB7 SER A 515 LYS A 528 1 14 HELIX 17 AB8 THR B 27 GLU B 44 1 18 HELIX 18 AB9 PHE B 77 THR B 84 1 8 HELIX 19 AC1 GLY B 99 LYS B 103 5 5 HELIX 20 AC2 GLY B 112 VAL B 118 5 7 HELIX 21 AC3 PHE B 124 ALA B 129 5 6 HELIX 22 AC4 SER B 134 GLU B 138 5 5 HELIX 23 AC5 LYS B 154 ASN B 175 1 22 HELIX 24 AC6 GLU B 194 TRP B 212 1 19 HELIX 25 AC7 VAL B 254 SER B 268 1 15 HELIX 26 AC8 VAL B 276 LEU B 282 1 7 HELIX 27 AC9 THR B 296 LYS B 311 1 16 HELIX 28 AD1 ASN B 363 GLY B 384 1 22 HELIX 29 AD2 GLN B 394 TRP B 402 1 9 HELIX 30 AD3 THR B 403 TYR B 405 5 3 HELIX 31 AD4 LYS B 424 GLN B 428 5 5 SHEET 1 AA1 3 ILE A 47 LYS A 49 0 SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N ILE A 132 O ILE A 142 SHEET 1 AA2 2 VAL A 60 LYS A 64 0 SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O LEU A 187 N LEU A 109 SHEET 3 AA3 3 VAL A 179 TYR A 183 -1 N VAL A 179 O GLY A 190 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 5 LYS A 347 ALA A 355 0 SHEET 2 AA5 5 GLN A 336 GLU A 344 -1 N TYR A 339 O GLY A 352 SHEET 3 AA5 5 ILE A 326 GLY A 333 -1 N ILE A 326 O TYR A 342 SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391 SHEET 1 AA6 2 HIS A 361 THR A 362 0 SHEET 2 AA6 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 AA7 5 GLN A 464 THR A 470 0 SHEET 2 AA7 5 LEU A 452 THR A 459 -1 N GLY A 453 O LEU A 469 SHEET 3 AA7 5 THR A 439 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 AA7 5 GLU A 492 THR A 497 1 O VAL A 496 N VAL A 442 SHEET 5 AA7 5 LYS A 530 TRP A 535 1 O TYR A 532 N ILE A 495 SHEET 1 AA8 3 ILE B 47 LYS B 49 0 SHEET 2 AA8 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA8 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AA9 2 VAL B 60 ILE B 63 0 SHEET 2 AA9 2 ARG B 72 VAL B 75 -1 O LEU B 74 N PHE B 61 SHEET 1 AB1 4 VAL B 179 TYR B 183 0 SHEET 2 AB1 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 AB1 4 SER B 105 ASP B 110 -1 N THR B 107 O VAL B 189 SHEET 4 AB1 4 TYR B 232 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 AB2 2 TRP B 252 THR B 253 0 SHEET 2 AB2 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252 SHEET 1 AB3 5 LYS B 347 TYR B 354 0 SHEET 2 AB3 5 GLN B 336 GLU B 344 -1 N ILE B 341 O LYS B 350 SHEET 3 AB3 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 AB3 5 LYS B 388 LEU B 391 1 O LYS B 388 N ALA B 327 SHEET 5 AB3 5 GLU B 413 PHE B 416 1 O GLU B 413 N PHE B 389 CISPEP 1 PRO A 225 PRO A 226 0 5.52 CISPEP 2 PRO A 420 PRO A 421 0 -2.41 CRYST1 163.050 73.870 108.640 90.00 99.96 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006133 0.000000 0.001077 0.00000 SCALE2 0.000000 0.013537 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009346 0.00000