data_7TDA # _entry.id 7TDA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7TDA pdb_00007tda 10.2210/pdb7tda/pdb WWPDB D_1000262085 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7TDA _pdbx_database_status.recvd_initial_deposition_date 2021-12-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nuthanakanti, A.' 1 0000-0003-0105-3430 'Serganov, A.' 2 0000-0001-8328-9310 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1554-8937 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 17 _citation.language ? _citation.page_first 438 _citation.page_last 448 _citation.title 'Subsite Ligand Recognition and Cooperativity in the TPP Riboswitch: Implications for Fragment-Linking in RNA Ligand Discovery.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acschembio.1c00880 _citation.pdbx_database_id_PubMed 35060698 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zeller, M.J.' 1 ? primary 'Nuthanakanti, A.' 2 ? primary 'Li, K.' 3 ? primary 'Aube, J.' 4 ? primary 'Serganov, A.' 5 ? primary 'Weeks, K.M.' 6 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 7TDA _cell.details ? _cell.formula_units_Z ? _cell.length_a 65.410 _cell.length_a_esd ? _cell.length_b 65.410 _cell.length_b_esd ? _cell.length_c 101.504 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'thiM TPP riboswitch RNA (80-MER)' 26860.900 1 ? ? ? ? 2 non-polymer syn 'THIAMINE DIPHOSPHATE' 425.314 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 6 ? ? ? ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 9 ? ? ? ? 5 water nat water 18.015 33 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GC(A23) ; _entity_poly.pdbx_seq_one_letter_code_can ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 A n 1 5 C n 1 6 U n 1 7 C n 1 8 G n 1 9 G n 1 10 G n 1 11 G n 1 12 U n 1 13 G n 1 14 C n 1 15 C n 1 16 C n 1 17 U n 1 18 U n 1 19 C n 1 20 U n 1 21 G n 1 22 C n 1 23 G n 1 24 U n 1 25 G n 1 26 A n 1 27 A n 1 28 G n 1 29 G n 1 30 C n 1 31 U n 1 32 G n 1 33 A n 1 34 G n 1 35 A n 1 36 A n 1 37 A n 1 38 U n 1 39 A n 1 40 C n 1 41 C n 1 42 C n 1 43 G n 1 44 U n 1 45 A n 1 46 U n 1 47 C n 1 48 A n 1 49 C n 1 50 C n 1 51 U n 1 52 G n 1 53 A n 1 54 U n 1 55 C n 1 56 U n 1 57 G n 1 58 G n 1 59 A n 1 60 U n 1 61 A n 1 62 A n 1 63 U n 1 64 G n 1 65 C n 1 66 C n 1 67 A n 1 68 G n 1 69 C n 1 70 G n 1 71 U n 1 72 A n 1 73 G n 1 74 G n 1 75 G n 1 76 A n 1 77 A n 1 78 G n 1 79 U n 1 80 C n 1 81 G n 1 82 C n 1 83 A23 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 83 _pdbx_entity_src_syn.organism_scientific 'Escherichia coli' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7TDA _struct_ref.pdbx_db_accession 7TDA _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7TDA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 83 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7TDA _struct_ref_seq.db_align_beg 9 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 91 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 9 _struct_ref_seq.pdbx_auth_seq_align_end 91 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A23 'RNA linking' n ;ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C10 H13 N5 O9 P2' 409.186 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 TPP non-polymer . 'THIAMINE DIPHOSPHATE' ? 'C12 H19 N4 O7 P2 S 1' 425.314 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7TDA _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.29 _exptl_crystal.description 'Rod-shaped crystals' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;RNA (0.15 mM) was incubated in a buffer containing 5 mM Tris-HCl, pH 8.0, 3 mM MgCl2, 10 mM NaCl, 0.1 M KCl, and 0.5 mM spermine with 0.5 mM of TPP. the reservoir solution was 50 mM Bis-Tris HCl, pH 6.5, 0.5 M NH4Cl, 10 mm MnCl2, and 30% (v/v) PEG2000 ; _exptl_crystal_grow.pdbx_pH_range 6.0-6.5 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-02-01 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-2 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7TDA _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.25 _reflns.d_resolution_low 30.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12071 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.4 _reflns.pdbx_Rmerge_I_obs 0.064 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 82.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.019 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.994 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.25 _reflns_shell.d_res_low 2.29 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.0 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 589 _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.297 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.437 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.7 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7TDA _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.25 _refine.ls_d_res_low 29.05 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12071 _refine.ls_number_reflns_R_free 2311 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.83 _refine.ls_percent_reflns_R_free 10.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2112 _refine.ls_R_factor_R_free 0.2313 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2089 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 2HOJ _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.27 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.42 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1664 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 1731 _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 29.05 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? 1910 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.951 ? 2971 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 16.233 ? 935 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.048 ? 384 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 78 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.25 2.29 . . 132 1170 98.00 . . . 0.5307 . 0.4532 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.29 2.34 . . 146 1247 100.00 . . . 0.4188 . 0.3822 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.34 2.40 . . 140 1232 100.00 . . . 0.3624 . 0.3426 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.40 2.46 . . 132 1205 100.00 . . . 0.3900 . 0.3376 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.46 2.52 . . 130 1229 100.00 . . . 0.3679 . 0.2794 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.53 2.60 . . 126 1224 100.00 . . . 0.3340 . 0.2935 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.60 2.68 . . 138 1231 100.00 . . . 0.3268 . 0.3191 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.68 2.78 . . 136 1223 100.00 . . . 0.3348 . 0.3215 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.78 2.89 . . 138 1195 100.00 . . . 0.3290 . 0.3060 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.89 3.02 . . 135 1250 100.00 . . . 0.2920 . 0.2697 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.02 3.18 . . 142 1232 100.00 . . . 0.2280 . 0.2325 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.18 3.38 . . 134 1212 100.00 . . . 0.2170 . 0.2108 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.38 3.64 . . 144 1222 100.00 . . . 0.2410 . 0.1922 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.64 4.01 . . 138 1227 100.00 . . . 0.2015 . 0.1786 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.01 4.58 . . 136 1208 100.00 . . . 0.1855 . 0.1690 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.58 5.76 . . 128 1232 100.00 . . . 0.1615 . 0.1626 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.77 29.05 . . 136 1228 100.00 . . . 0.2068 . 0.1650 . . . . . . . . . . . # _struct.entry_id 7TDA _struct.title 'Crystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ions' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7TDA _struct_keywords.text RNA _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 82 "O3'" ? ? ? 1_555 A A23 83 P ? ? A C 90 A A23 91 1_555 ? ? ? ? ? ? ? 1.562 ? ? metalc1 metalc ? ? A G 1 "O2'" ? ? ? 1_555 C MG . MG ? ? A G 9 A MG 202 1_555 ? ? ? ? ? ? ? 2.816 ? ? metalc2 metalc ? ? A G 10 N7 ? ? ? 1_555 I MN . MN ? ? A G 18 A MN 208 1_555 ? ? ? ? ? ? ? 2.623 ? ? metalc3 metalc ? ? A U 24 "O3'" ? ? ? 1_555 H MG . MG ? ? A U 32 A MG 207 1_555 ? ? ? ? ? ? ? 2.622 ? ? metalc4 metalc ? ? A C 30 "O2'" ? ? ? 1_555 E MG . MG ? ? A C 38 A MG 204 1_555 ? ? ? ? ? ? ? 2.565 ? ? metalc5 metalc ? ? A G 32 N7 ? ? ? 1_555 O MN . MN ? ? A G 40 A MN 214 1_555 ? ? ? ? ? ? ? 2.694 ? ? metalc6 metalc ? ? A A 33 N7 ? ? ? 1_555 N MN . MN ? ? A A 41 A MN 213 1_555 ? ? ? ? ? ? ? 2.519 ? ? metalc7 metalc ? ? A G 52 O6 ? ? ? 1_555 K MN . MN ? ? A G 60 A MN 210 1_555 ? ? ? ? ? ? ? 2.345 ? ? metalc8 metalc ? ? A C 55 OP1 ? ? ? 1_555 M MN . MN ? ? A C 63 A MN 212 1_555 ? ? ? ? ? ? ? 2.295 ? ? metalc9 metalc ? ? A U 56 OP2 ? ? ? 1_555 M MN . MN ? ? A U 64 A MN 212 1_555 ? ? ? ? ? ? ? 2.255 ? ? metalc10 metalc ? ? A U 56 OP1 ? ? ? 1_555 M MN . MN ? ? A U 64 A MN 212 4_665 ? ? ? ? ? ? ? 2.231 ? ? metalc11 metalc ? ? A A 61 OP1 ? ? ? 1_555 P MN . MN ? ? A A 69 A MN 215 1_555 ? ? ? ? ? ? ? 2.446 ? ? metalc12 metalc ? ? A A 61 N7 ? ? ? 1_555 Q MN . MN ? ? A A 69 A MN 216 5_554 ? ? ? ? ? ? ? 2.643 ? ? metalc13 metalc ? ? A U 63 O4 ? ? ? 1_555 E MG . MG ? ? A U 71 A MG 204 1_555 ? ? ? ? ? ? ? 2.874 ? ? metalc14 metalc ? ? A G 70 O6 ? ? ? 1_555 K MN . MN ? ? A G 78 A MN 210 1_555 ? ? ? ? ? ? ? 2.369 ? ? metalc15 metalc ? ? A A23 83 O2C ? ? ? 1_555 P MN . MN ? ? A A23 91 A MN 215 5_554 ? ? ? ? ? ? ? 2.519 ? ? metalc16 metalc ? ? A A23 83 OP2 ? ? ? 1_555 Q MN . MN ? ? A A23 91 A MN 216 1_555 ? ? ? ? ? ? ? 2.549 ? ? metalc17 metalc ? ? B TPP . O3B ? ? ? 1_555 K MN . MN ? ? A TPP 201 A MN 210 1_555 ? ? ? ? ? ? ? 2.455 ? ? metalc18 metalc ? ? B TPP . O1A ? ? ? 1_555 L MN . MN ? ? A TPP 201 A MN 211 1_555 ? ? ? ? ? ? ? 2.545 ? ? metalc19 metalc ? ? B TPP . O2B ? ? ? 1_555 L MN . MN ? ? A TPP 201 A MN 211 1_555 ? ? ? ? ? ? ? 2.405 ? ? metalc20 metalc ? ? K MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 210 A HOH 303 1_555 ? ? ? ? ? ? ? 2.155 ? ? metalc21 metalc ? ? K MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 210 A HOH 305 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc22 metalc ? ? K MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 210 A HOH 313 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc23 metalc ? ? L MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 211 A HOH 301 1_555 ? ? ? ? ? ? ? 2.164 ? ? metalc24 metalc ? ? L MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 211 A HOH 310 1_555 ? ? ? ? ? ? ? 2.152 ? ? metalc25 metalc ? ? L MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 211 A HOH 311 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc26 metalc ? ? L MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 211 A HOH 317 1_555 ? ? ? ? ? ? ? 2.170 ? ? metalc27 metalc ? ? M MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 212 A HOH 306 4_665 ? ? ? ? ? ? ? 2.150 ? ? metalc28 metalc ? ? M MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 212 A HOH 314 4_665 ? ? ? ? ? ? ? 2.146 ? ? metalc29 metalc ? ? M MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 212 A HOH 321 1_555 ? ? ? ? ? ? ? 2.163 ? ? metalc30 metalc ? ? N MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 213 A HOH 318 1_555 ? ? ? ? ? ? ? 2.152 ? ? metalc31 metalc ? ? N MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 213 A HOH 319 1_555 ? ? ? ? ? ? ? 2.149 ? ? metalc32 metalc ? ? N MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 213 A HOH 320 1_555 ? ? ? ? ? ? ? 2.166 ? ? metalc33 metalc ? ? N MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 213 A HOH 322 1_555 ? ? ? ? ? ? ? 2.165 ? ? metalc34 metalc ? ? N MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 213 A HOH 333 1_555 ? ? ? ? ? ? ? 2.157 ? ? metalc35 metalc ? ? O MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 214 A HOH 309 1_555 ? ? ? ? ? ? ? 2.169 ? ? metalc36 metalc ? ? O MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 214 A HOH 315 1_555 ? ? ? ? ? ? ? 2.152 ? ? metalc37 metalc ? ? O MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 214 A HOH 324 5_554 ? ? ? ? ? ? ? 2.154 ? ? metalc38 metalc ? ? O MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 214 A HOH 325 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc39 metalc ? ? O MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 214 A HOH 327 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc40 metalc ? ? P MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 215 A HOH 307 1_555 ? ? ? ? ? ? ? 2.165 ? ? metalc41 metalc ? ? P MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 215 A HOH 312 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc42 metalc ? ? P MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 215 A HOH 328 5_554 ? ? ? ? ? ? ? 2.161 ? ? metalc43 metalc ? ? P MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 215 A HOH 329 5_554 ? ? ? ? ? ? ? 2.160 ? ? metalc44 metalc ? ? Q MN . MN ? ? ? 1_555 R HOH . O ? ? A MN 216 A HOH 312 5_554 ? ? ? ? ? ? ? 2.723 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 82 N3 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 82 O2 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 82 N4 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 81 N1 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 81 O6 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 81 N2 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 80 N3 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 80 O2 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 80 N4 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 79 N3 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 79 O4 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 78 N1 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 78 O6 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 78 N2 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 77 N1 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 77 N6 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 76 N3 ? ? A G 16 A A 84 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 48 N3 ? ? A G 17 A A 56 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog28 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 34 N3 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog32 hydrog ? ? A G 11 N3 ? ? ? 1_555 A G 34 N2 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog33 hydrog ? ? A G 11 N1 ? ? ? 1_555 A A 39 N1 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog34 hydrog ? ? A G 11 O6 ? ? ? 1_555 A A 39 N6 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog35 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 37 N1 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 37 N6 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 13 N2 ? ? ? 1_555 A U 63 O2 ? ? A G 21 A U 71 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog41 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 16 O2 ? ? ? 1_555 A A 27 N6 ? ? A C 24 A A 35 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog48 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 61 N1 ? ? A G 37 A A 69 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog49 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 35 N7 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog50 hydrog ? ? A U 31 O2 ? ? ? 1_555 A A 35 N6 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog51 hydrog ? ? A A 45 N6 ? ? ? 1_555 A A 76 N7 ? ? A A 53 A A 84 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog52 hydrog ? ? A A 45 N7 ? ? ? 1_555 A A 76 N6 ? ? A A 53 A A 84 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog53 hydrog ? ? A A 48 N6 ? ? ? 1_555 A G 75 N3 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog54 hydrog ? ? A A 48 N7 ? ? ? 1_555 A G 75 N2 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog55 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 74 N1 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 74 O6 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 74 N2 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 51 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 51 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 52 N1 ? ? ? 1_555 A G 70 O6 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog64 hydrog ? ? A G 52 N2 ? ? ? 1_555 A G 70 N7 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog65 hydrog ? ? A A 53 N3 ? ? ? 1_555 A G 64 N2 ? ? A A 61 A G 72 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog66 hydrog ? ? A A 53 N6 ? ? ? 1_555 A C 69 O2 ? ? A A 61 A C 77 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog67 hydrog ? ? A C 55 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 55 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 55 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A U 56 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A U 56 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 58 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 58 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 58 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _atom_sites.entry_id 7TDA _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.015288 _atom_sites.fract_transf_matrix[1][2] 0.008827 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017653 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009852 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 9 9 G G A . n A 1 2 C 2 10 10 C C A . n A 1 3 G 3 11 11 G G A . n A 1 4 A 4 12 12 A A A . n A 1 5 C 5 13 13 C C A . n A 1 6 U 6 14 14 U U A . n A 1 7 C 7 15 15 C C A . n A 1 8 G 8 16 16 G G A . n A 1 9 G 9 17 17 G G A . n A 1 10 G 10 18 18 G G A . n A 1 11 G 11 19 19 G G A . n A 1 12 U 12 20 20 U U A . n A 1 13 G 13 21 21 G G A . n A 1 14 C 14 22 22 C C A . n A 1 15 C 15 23 23 C C A . n A 1 16 C 16 24 24 C C A . n A 1 17 U 17 25 25 U U A . n A 1 18 U 18 26 26 U U A . n A 1 19 C 19 27 ? ? ? A . n A 1 20 U 20 28 ? ? ? A . n A 1 21 G 21 29 ? ? ? A . n A 1 22 C 22 30 30 C C A . n A 1 23 G 23 31 31 G G A . n A 1 24 U 24 32 32 U U A . n A 1 25 G 25 33 33 G G A . n A 1 26 A 26 34 34 A A A . n A 1 27 A 27 35 35 A A A . n A 1 28 G 28 36 36 G G A . n A 1 29 G 29 37 37 G G A . n A 1 30 C 30 38 38 C C A . n A 1 31 U 31 39 39 U U A . n A 1 32 G 32 40 40 G G A . n A 1 33 A 33 41 41 A A A . n A 1 34 G 34 42 42 G G A . n A 1 35 A 35 43 43 A A A . n A 1 36 A 36 44 44 A A A . n A 1 37 A 37 45 45 A A A . n A 1 38 U 38 46 46 U U A . n A 1 39 A 39 47 47 A A A . n A 1 40 C 40 48 48 C C A . n A 1 41 C 41 49 49 C C A . n A 1 42 C 42 50 50 C C A . n A 1 43 G 43 51 51 G G A . n A 1 44 U 44 52 52 U U A . n A 1 45 A 45 53 53 A A A . n A 1 46 U 46 54 54 U U A . n A 1 47 C 47 55 55 C C A . n A 1 48 A 48 56 56 A A A . n A 1 49 C 49 57 57 C C A . n A 1 50 C 50 58 58 C C A . n A 1 51 U 51 59 59 U U A . n A 1 52 G 52 60 60 G G A . n A 1 53 A 53 61 61 A A A . n A 1 54 U 54 62 62 U U A . n A 1 55 C 55 63 63 C C A . n A 1 56 U 56 64 64 U U A . n A 1 57 G 57 65 65 G G A . n A 1 58 G 58 66 66 G G A . n A 1 59 A 59 67 67 A A A . n A 1 60 U 60 68 68 U U A . n A 1 61 A 61 69 69 A A A . n A 1 62 A 62 70 70 A A A . n A 1 63 U 63 71 71 U U A . n A 1 64 G 64 72 72 G G A . n A 1 65 C 65 73 73 C C A . n A 1 66 C 66 74 74 C C A . n A 1 67 A 67 75 75 A A A . n A 1 68 G 68 76 76 G G A . n A 1 69 C 69 77 77 C C A . n A 1 70 G 70 78 78 G G A . n A 1 71 U 71 79 79 U U A . n A 1 72 A 72 80 80 A A A . n A 1 73 G 73 81 81 G G A . n A 1 74 G 74 82 82 G G A . n A 1 75 G 75 83 83 G G A . n A 1 76 A 76 84 84 A A A . n A 1 77 A 77 85 85 A A A . n A 1 78 G 78 86 86 G G A . n A 1 79 U 79 87 87 U U A . n A 1 80 C 80 88 88 C C A . n A 1 81 G 81 89 89 G G A . n A 1 82 C 82 90 90 C C A . n A 1 83 A23 83 91 91 A23 A91 A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email Alexander.Serganov@nyulangone.org _pdbx_contact_author.name_first Alexander _pdbx_contact_author.name_last Serganov _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8328-9310 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TPP 1 201 201 TPP TPP A . C 3 MG 1 202 1 MG MG A . D 3 MG 1 203 2 MG MG A . E 3 MG 1 204 3 MG MG A . F 3 MG 1 205 4 MG MG A . G 3 MG 1 206 5 MG MG A . H 3 MG 1 207 6 MG MG A . I 4 MN 1 208 7 MN MN A . J 4 MN 1 209 8 MN MN A . K 4 MN 1 210 245 MN MN6 A . L 4 MN 1 211 246 MN MN6 A . M 4 MN 1 212 247 MN MN6 A . N 4 MN 1 213 249 MN MN6 A . O 4 MN 1 214 250 MN MN6 A . P 4 MN 1 215 251 MN MN6 A . Q 4 MN 1 216 252 MN MN6 A . R 5 HOH 1 301 246 HOH MN6 A . R 5 HOH 2 302 1 HOH HOH A . R 5 HOH 3 303 245 HOH MN6 A . R 5 HOH 4 304 4 HOH HOH A . R 5 HOH 5 305 245 HOH MN6 A . R 5 HOH 6 306 247 HOH MN6 A . R 5 HOH 7 307 251 HOH MN6 A . R 5 HOH 8 308 7 HOH HOH A . R 5 HOH 9 309 250 HOH MN6 A . R 5 HOH 10 310 246 HOH MN6 A . R 5 HOH 11 311 246 HOH MN6 A . R 5 HOH 12 312 251 HOH MN6 A . R 5 HOH 13 313 245 HOH MN6 A . R 5 HOH 14 314 247 HOH MN6 A . R 5 HOH 15 315 250 HOH MN6 A . R 5 HOH 16 316 8 HOH HOH A . R 5 HOH 17 317 246 HOH MN6 A . R 5 HOH 18 318 249 HOH MN6 A . R 5 HOH 19 319 249 HOH MN6 A . R 5 HOH 20 320 249 HOH MN6 A . R 5 HOH 21 321 247 HOH MN6 A . R 5 HOH 22 322 249 HOH MN6 A . R 5 HOH 23 323 2 HOH HOH A . R 5 HOH 24 324 250 HOH MN6 A . R 5 HOH 25 325 250 HOH MN6 A . R 5 HOH 26 326 6 HOH HOH A . R 5 HOH 27 327 250 HOH MN6 A . R 5 HOH 28 328 251 HOH MN6 A . R 5 HOH 29 329 251 HOH MN6 A . R 5 HOH 30 330 5 HOH HOH A . R 5 HOH 31 331 9 HOH HOH A . R 5 HOH 32 332 3 HOH HOH A . R 5 HOH 33 333 249 HOH MN6 A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O2'" ? A C 30 ? A C 38 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 O4 ? A U 63 ? A U 71 ? 1_555 126.2 ? 2 N7 ? A G 32 ? A G 40 ? 1_555 MN ? O MN . ? A MN 214 ? 1_555 O ? R HOH . ? A HOH 309 ? 1_555 94.6 ? 3 N7 ? A G 32 ? A G 40 ? 1_555 MN ? O MN . ? A MN 214 ? 1_555 O ? R HOH . ? A HOH 315 ? 1_555 78.9 ? 4 O ? R HOH . ? A HOH 309 ? 1_555 MN ? O MN . ? A MN 214 ? 1_555 O ? R HOH . ? A HOH 315 ? 1_555 91.1 ? 5 N7 ? A G 32 ? A G 40 ? 1_555 MN ? O MN . ? A MN 214 ? 1_555 O ? R HOH . ? A HOH 324 ? 5_554 168.2 ? 6 O ? R HOH . ? A HOH 309 ? 1_555 MN ? O MN . ? A MN 214 ? 1_555 O ? R HOH . ? A HOH 324 ? 5_554 89.5 ? 7 O ? R HOH . ? A HOH 315 ? 1_555 MN ? O MN . ? A MN 214 ? 1_555 O ? R HOH . ? A HOH 324 ? 5_554 90.0 ? 8 N7 ? A G 32 ? A G 40 ? 1_555 MN ? O MN . ? A MN 214 ? 1_555 O ? R HOH . ? A HOH 325 ? 1_555 84.8 ? 9 O ? R HOH . ? A HOH 309 ? 1_555 MN ? O MN . ? A MN 214 ? 1_555 O ? R HOH . ? A HOH 325 ? 1_555 179.2 ? 10 O ? R HOH . ? A HOH 315 ? 1_555 MN ? O MN . ? A MN 214 ? 1_555 O ? R HOH . ? A HOH 325 ? 1_555 89.3 ? 11 O ? R HOH . ? A HOH 324 ? 5_554 MN ? O MN . ? A MN 214 ? 1_555 O ? R HOH . ? A HOH 325 ? 1_555 91.2 ? 12 N7 ? A G 32 ? A G 40 ? 1_555 MN ? O MN . ? A MN 214 ? 1_555 O ? R HOH . ? A HOH 327 ? 1_555 101.7 ? 13 O ? R HOH . ? A HOH 309 ? 1_555 MN ? O MN . ? A MN 214 ? 1_555 O ? R HOH . ? A HOH 327 ? 1_555 88.6 ? 14 O ? R HOH . ? A HOH 315 ? 1_555 MN ? O MN . ? A MN 214 ? 1_555 O ? R HOH . ? A HOH 327 ? 1_555 179.3 ? 15 O ? R HOH . ? A HOH 324 ? 5_554 MN ? O MN . ? A MN 214 ? 1_555 O ? R HOH . ? A HOH 327 ? 1_555 89.4 ? 16 O ? R HOH . ? A HOH 325 ? 1_555 MN ? O MN . ? A MN 214 ? 1_555 O ? R HOH . ? A HOH 327 ? 1_555 91.0 ? 17 N7 ? A A 33 ? A A 41 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 O ? R HOH . ? A HOH 318 ? 1_555 98.4 ? 18 N7 ? A A 33 ? A A 41 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 O ? R HOH . ? A HOH 319 ? 1_555 82.3 ? 19 O ? R HOH . ? A HOH 318 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 O ? R HOH . ? A HOH 319 ? 1_555 89.6 ? 20 N7 ? A A 33 ? A A 41 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 O ? R HOH . ? A HOH 320 ? 1_555 82.6 ? 21 O ? R HOH . ? A HOH 318 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 O ? R HOH . ? A HOH 320 ? 1_555 178.9 ? 22 O ? R HOH . ? A HOH 319 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 O ? R HOH . ? A HOH 320 ? 1_555 90.6 ? 23 N7 ? A A 33 ? A A 41 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 O ? R HOH . ? A HOH 322 ? 1_555 99.1 ? 24 O ? R HOH . ? A HOH 318 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 O ? R HOH . ? A HOH 322 ? 1_555 90.4 ? 25 O ? R HOH . ? A HOH 319 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 O ? R HOH . ? A HOH 322 ? 1_555 178.6 ? 26 O ? R HOH . ? A HOH 320 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 O ? R HOH . ? A HOH 322 ? 1_555 89.4 ? 27 N7 ? A A 33 ? A A 41 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 O ? R HOH . ? A HOH 333 ? 1_555 169.8 ? 28 O ? R HOH . ? A HOH 318 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 O ? R HOH . ? A HOH 333 ? 1_555 89.1 ? 29 O ? R HOH . ? A HOH 319 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 O ? R HOH . ? A HOH 333 ? 1_555 90.9 ? 30 O ? R HOH . ? A HOH 320 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 O ? R HOH . ? A HOH 333 ? 1_555 89.8 ? 31 O ? R HOH . ? A HOH 322 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 O ? R HOH . ? A HOH 333 ? 1_555 87.7 ? 32 O6 ? A G 52 ? A G 60 ? 1_555 MN ? K MN . ? A MN 210 ? 1_555 O6 ? A G 70 ? A G 78 ? 1_555 80.7 ? 33 O6 ? A G 52 ? A G 60 ? 1_555 MN ? K MN . ? A MN 210 ? 1_555 O3B ? B TPP . ? A TPP 201 ? 1_555 166.0 ? 34 O6 ? A G 70 ? A G 78 ? 1_555 MN ? K MN . ? A MN 210 ? 1_555 O3B ? B TPP . ? A TPP 201 ? 1_555 102.4 ? 35 O6 ? A G 52 ? A G 60 ? 1_555 MN ? K MN . ? A MN 210 ? 1_555 O ? R HOH . ? A HOH 303 ? 1_555 79.2 ? 36 O6 ? A G 70 ? A G 78 ? 1_555 MN ? K MN . ? A MN 210 ? 1_555 O ? R HOH . ? A HOH 303 ? 1_555 159.8 ? 37 O3B ? B TPP . ? A TPP 201 ? 1_555 MN ? K MN . ? A MN 210 ? 1_555 O ? R HOH . ? A HOH 303 ? 1_555 97.6 ? 38 O6 ? A G 52 ? A G 60 ? 1_555 MN ? K MN . ? A MN 210 ? 1_555 O ? R HOH . ? A HOH 305 ? 1_555 89.1 ? 39 O6 ? A G 70 ? A G 78 ? 1_555 MN ? K MN . ? A MN 210 ? 1_555 O ? R HOH . ? A HOH 305 ? 1_555 90.0 ? 40 O3B ? B TPP . ? A TPP 201 ? 1_555 MN ? K MN . ? A MN 210 ? 1_555 O ? R HOH . ? A HOH 305 ? 1_555 77.2 ? 41 O ? R HOH . ? A HOH 303 ? 1_555 MN ? K MN . ? A MN 210 ? 1_555 O ? R HOH . ? A HOH 305 ? 1_555 91.4 ? 42 O6 ? A G 52 ? A G 60 ? 1_555 MN ? K MN . ? A MN 210 ? 1_555 O ? R HOH . ? A HOH 313 ? 1_555 90.4 ? 43 O6 ? A G 70 ? A G 78 ? 1_555 MN ? K MN . ? A MN 210 ? 1_555 O ? R HOH . ? A HOH 313 ? 1_555 88.2 ? 44 O3B ? B TPP . ? A TPP 201 ? 1_555 MN ? K MN . ? A MN 210 ? 1_555 O ? R HOH . ? A HOH 313 ? 1_555 103.3 ? 45 O ? R HOH . ? A HOH 303 ? 1_555 MN ? K MN . ? A MN 210 ? 1_555 O ? R HOH . ? A HOH 313 ? 1_555 90.3 ? 46 O ? R HOH . ? A HOH 305 ? 1_555 MN ? K MN . ? A MN 210 ? 1_555 O ? R HOH . ? A HOH 313 ? 1_555 178.2 ? 47 OP1 ? A C 55 ? A C 63 ? 1_555 MN ? M MN . ? A MN 212 ? 1_555 OP2 ? A U 56 ? A U 64 ? 1_555 79.7 ? 48 OP1 ? A C 55 ? A C 63 ? 1_555 MN ? M MN . ? A MN 212 ? 1_555 OP1 ? A U 56 ? A U 64 ? 1_555 84.2 ? 49 OP2 ? A U 56 ? A U 64 ? 1_555 MN ? M MN . ? A MN 212 ? 1_555 OP1 ? A U 56 ? A U 64 ? 1_555 30.8 ? 50 OP1 ? A C 55 ? A C 63 ? 1_555 MN ? M MN . ? A MN 212 ? 1_555 O ? R HOH . ? A HOH 306 ? 4_665 171.3 ? 51 OP2 ? A U 56 ? A U 64 ? 1_555 MN ? M MN . ? A MN 212 ? 1_555 O ? R HOH . ? A HOH 306 ? 4_665 91.8 ? 52 OP1 ? A U 56 ? A U 64 ? 1_555 MN ? M MN . ? A MN 212 ? 1_555 O ? R HOH . ? A HOH 306 ? 4_665 87.7 ? 53 OP1 ? A C 55 ? A C 63 ? 1_555 MN ? M MN . ? A MN 212 ? 1_555 O ? R HOH . ? A HOH 314 ? 4_665 98.2 ? 54 OP2 ? A U 56 ? A U 64 ? 1_555 MN ? M MN . ? A MN 212 ? 1_555 O ? R HOH . ? A HOH 314 ? 4_665 174.7 ? 55 OP1 ? A U 56 ? A U 64 ? 1_555 MN ? M MN . ? A MN 212 ? 1_555 O ? R HOH . ? A HOH 314 ? 4_665 144.4 ? 56 O ? R HOH . ? A HOH 306 ? 4_665 MN ? M MN . ? A MN 212 ? 1_555 O ? R HOH . ? A HOH 314 ? 4_665 90.2 ? 57 OP1 ? A C 55 ? A C 63 ? 1_555 MN ? M MN . ? A MN 212 ? 1_555 O ? R HOH . ? A HOH 321 ? 1_555 91.9 ? 58 OP2 ? A U 56 ? A U 64 ? 1_555 MN ? M MN . ? A MN 212 ? 1_555 O ? R HOH . ? A HOH 321 ? 1_555 89.5 ? 59 OP1 ? A U 56 ? A U 64 ? 1_555 MN ? M MN . ? A MN 212 ? 1_555 O ? R HOH . ? A HOH 321 ? 1_555 120.0 ? 60 O ? R HOH . ? A HOH 306 ? 4_665 MN ? M MN . ? A MN 212 ? 1_555 O ? R HOH . ? A HOH 321 ? 1_555 89.5 ? 61 O ? R HOH . ? A HOH 314 ? 4_665 MN ? M MN . ? A MN 212 ? 1_555 O ? R HOH . ? A HOH 321 ? 1_555 95.5 ? 62 OP1 ? A A 61 ? A A 69 ? 1_555 MN ? P MN . ? A MN 215 ? 1_555 O2C ? A A23 83 ? A A23 91 ? 1_555 91.4 ? 63 OP1 ? A A 61 ? A A 69 ? 1_555 MN ? P MN . ? A MN 215 ? 1_555 O ? R HOH . ? A HOH 307 ? 1_555 70.5 ? 64 O2C ? A A23 83 ? A A23 91 ? 1_555 MN ? P MN . ? A MN 215 ? 1_555 O ? R HOH . ? A HOH 307 ? 1_555 64.8 ? 65 OP1 ? A A 61 ? A A 69 ? 1_555 MN ? P MN . ? A MN 215 ? 1_555 O ? R HOH . ? A HOH 312 ? 1_555 76.5 ? 66 O2C ? A A23 83 ? A A23 91 ? 1_555 MN ? P MN . ? A MN 215 ? 1_555 O ? R HOH . ? A HOH 312 ? 1_555 34.1 ? 67 O ? R HOH . ? A HOH 307 ? 1_555 MN ? P MN . ? A MN 215 ? 1_555 O ? R HOH . ? A HOH 312 ? 1_555 88.7 ? 68 OP1 ? A A 61 ? A A 69 ? 1_555 MN ? P MN . ? A MN 215 ? 1_555 O ? R HOH . ? A HOH 328 ? 5_554 103.5 ? 69 O2C ? A A23 83 ? A A23 91 ? 1_555 MN ? P MN . ? A MN 215 ? 1_555 O ? R HOH . ? A HOH 328 ? 5_554 144.8 ? 70 O ? R HOH . ? A HOH 307 ? 1_555 MN ? P MN . ? A MN 215 ? 1_555 O ? R HOH . ? A HOH 328 ? 5_554 90.1 ? 71 O ? R HOH . ? A HOH 312 ? 1_555 MN ? P MN . ? A MN 215 ? 1_555 O ? R HOH . ? A HOH 328 ? 5_554 178.8 ? 72 OP1 ? A A 61 ? A A 69 ? 1_555 MN ? P MN . ? A MN 215 ? 1_555 O ? R HOH . ? A HOH 329 ? 5_554 155.7 ? 73 O2C ? A A23 83 ? A A23 91 ? 1_555 MN ? P MN . ? A MN 215 ? 1_555 O ? R HOH . ? A HOH 329 ? 5_554 66.1 ? 74 O ? R HOH . ? A HOH 307 ? 1_555 MN ? P MN . ? A MN 215 ? 1_555 O ? R HOH . ? A HOH 329 ? 5_554 90.6 ? 75 O ? R HOH . ? A HOH 312 ? 1_555 MN ? P MN . ? A MN 215 ? 1_555 O ? R HOH . ? A HOH 329 ? 5_554 88.2 ? 76 O ? R HOH . ? A HOH 328 ? 5_554 MN ? P MN . ? A MN 215 ? 1_555 O ? R HOH . ? A HOH 329 ? 5_554 91.4 ? 77 N7 ? A A 61 ? A A 69 ? 1_555 MN ? Q MN . ? A MN 216 ? 5_554 OP2 ? A A23 83 ? A A23 91 ? 1_555 118.7 ? 78 N7 ? A A 61 ? A A 69 ? 1_555 MN ? Q MN . ? A MN 216 ? 5_554 O ? R HOH . ? A HOH 312 ? 5_554 121.1 ? 79 OP2 ? A A23 83 ? A A23 91 ? 1_555 MN ? Q MN . ? A MN 216 ? 5_554 O ? R HOH . ? A HOH 312 ? 5_554 2.4 ? 80 O1A ? B TPP . ? A TPP 201 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O2B ? B TPP . ? A TPP 201 ? 1_555 78.5 ? 81 O1A ? B TPP . ? A TPP 201 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O ? R HOH . ? A HOH 301 ? 1_555 106.5 ? 82 O2B ? B TPP . ? A TPP 201 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O ? R HOH . ? A HOH 301 ? 1_555 100.7 ? 83 O1A ? B TPP . ? A TPP 201 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O ? R HOH . ? A HOH 310 ? 1_555 100.0 ? 84 O2B ? B TPP . ? A TPP 201 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O ? R HOH . ? A HOH 310 ? 1_555 171.3 ? 85 O ? R HOH . ? A HOH 301 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O ? R HOH . ? A HOH 310 ? 1_555 88.0 ? 86 O1A ? B TPP . ? A TPP 201 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O ? R HOH . ? A HOH 311 ? 1_555 72.5 ? 87 O2B ? B TPP . ? A TPP 201 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O ? R HOH . ? A HOH 311 ? 1_555 80.8 ? 88 O ? R HOH . ? A HOH 301 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O ? R HOH . ? A HOH 311 ? 1_555 178.1 ? 89 O ? R HOH . ? A HOH 310 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O ? R HOH . ? A HOH 311 ? 1_555 90.6 ? 90 O1A ? B TPP . ? A TPP 201 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O ? R HOH . ? A HOH 317 ? 1_555 161.8 ? 91 O2B ? B TPP . ? A TPP 201 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O ? R HOH . ? A HOH 317 ? 1_555 91.7 ? 92 O ? R HOH . ? A HOH 301 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O ? R HOH . ? A HOH 317 ? 1_555 90.2 ? 93 O ? R HOH . ? A HOH 310 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O ? R HOH . ? A HOH 317 ? 1_555 87.4 ? 94 O ? R HOH . ? A HOH 311 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O ? R HOH . ? A HOH 317 ? 1_555 90.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-02-16 2 'Structure model' 1 1 2022-03-02 3 'Structure model' 1 2 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.14_3260)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 7TDA _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 C _pdbx_validate_rmsd_angle.auth_seq_id_1 90 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 A23 _pdbx_validate_rmsd_angle.auth_seq_id_2 91 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 A23 _pdbx_validate_rmsd_angle.auth_seq_id_3 91 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 119.41 _pdbx_validate_rmsd_angle.angle_target_value 110.50 _pdbx_validate_rmsd_angle.angle_deviation 8.91 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 26 ? "C5'" ? A U 18 "C5'" 2 1 Y 1 A U 26 ? "C4'" ? A U 18 "C4'" 3 1 Y 1 A U 26 ? "O4'" ? A U 18 "O4'" 4 1 Y 1 A U 26 ? "C3'" ? A U 18 "C3'" 5 1 Y 1 A U 26 ? "O3'" ? A U 18 "O3'" 6 1 Y 1 A U 26 ? "C2'" ? A U 18 "C2'" 7 1 Y 1 A U 26 ? "O2'" ? A U 18 "O2'" 8 1 Y 1 A U 26 ? "C1'" ? A U 18 "C1'" 9 1 Y 1 A U 26 ? N1 ? A U 18 N1 10 1 Y 1 A U 26 ? C2 ? A U 18 C2 11 1 Y 1 A U 26 ? O2 ? A U 18 O2 12 1 Y 1 A U 26 ? N3 ? A U 18 N3 13 1 Y 1 A U 26 ? C4 ? A U 18 C4 14 1 Y 1 A U 26 ? O4 ? A U 18 O4 15 1 Y 1 A U 26 ? C5 ? A U 18 C5 16 1 Y 1 A U 26 ? C6 ? A U 18 C6 17 1 Y 1 A U 46 ? "O2'" ? A U 38 "O2'" 18 1 Y 1 A U 46 ? N1 ? A U 38 N1 19 1 Y 1 A U 46 ? C2 ? A U 38 C2 20 1 Y 1 A U 46 ? O2 ? A U 38 O2 21 1 Y 1 A U 46 ? N3 ? A U 38 N3 22 1 Y 1 A U 46 ? C4 ? A U 38 C4 23 1 Y 1 A U 46 ? O4 ? A U 38 O4 24 1 Y 1 A U 46 ? C5 ? A U 38 C5 25 1 Y 1 A U 46 ? C6 ? A U 38 C6 26 1 Y 1 A C 55 ? "O4'" ? A C 47 "O4'" 27 1 Y 1 A C 55 ? "C2'" ? A C 47 "C2'" 28 1 Y 1 A C 55 ? "O2'" ? A C 47 "O2'" 29 1 Y 1 A C 55 ? "C1'" ? A C 47 "C1'" 30 1 Y 1 A C 55 ? N1 ? A C 47 N1 31 1 Y 1 A C 55 ? C2 ? A C 47 C2 32 1 Y 1 A C 55 ? O2 ? A C 47 O2 33 1 Y 1 A C 55 ? N3 ? A C 47 N3 34 1 Y 1 A C 55 ? C4 ? A C 47 C4 35 1 Y 1 A C 55 ? N4 ? A C 47 N4 36 1 Y 1 A C 55 ? C5 ? A C 47 C5 37 1 Y 1 A C 55 ? C6 ? A C 47 C6 38 1 Y 1 A U 79 ? "O4'" ? A U 71 "O4'" 39 1 Y 1 A U 79 ? "C2'" ? A U 71 "C2'" 40 1 Y 1 A U 79 ? "O2'" ? A U 71 "O2'" 41 1 Y 1 A U 79 ? "C1'" ? A U 71 "C1'" 42 1 Y 1 A U 79 ? N1 ? A U 71 N1 43 1 Y 1 A U 79 ? C2 ? A U 71 C2 44 1 Y 1 A U 79 ? O2 ? A U 71 O2 45 1 Y 1 A U 79 ? N3 ? A U 71 N3 46 1 Y 1 A U 79 ? C4 ? A U 71 C4 47 1 Y 1 A U 79 ? O4 ? A U 71 O4 48 1 Y 1 A U 79 ? C5 ? A U 71 C5 49 1 Y 1 A U 79 ? C6 ? A U 71 C6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 27 ? A C 19 2 1 Y 1 A U 28 ? A U 20 3 1 Y 1 A G 29 ? A G 21 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A23 PC P N S 38 A23 O1C O N N 39 A23 O2C O N N 40 A23 P P N N 41 A23 OP1 O N N 42 A23 OP2 O N N 43 A23 OP3 O N N 44 A23 "O5'" O N N 45 A23 "C5'" C N N 46 A23 "C4'" C N R 47 A23 "O4'" O N N 48 A23 "C3'" C N R 49 A23 "O3'" O N N 50 A23 "C2'" C N R 51 A23 "O2'" O N N 52 A23 "C1'" C N R 53 A23 N9 N Y N 54 A23 C8 C Y N 55 A23 N7 N Y N 56 A23 C5 C Y N 57 A23 C6 C Y N 58 A23 N6 N N N 59 A23 N1 N Y N 60 A23 C2 C Y N 61 A23 N3 N Y N 62 A23 C4 C Y N 63 A23 HOC2 H N N 64 A23 HOP2 H N N 65 A23 HOP3 H N N 66 A23 "H5'" H N N 67 A23 "H5''" H N N 68 A23 "H4'" H N N 69 A23 "H3'" H N N 70 A23 "H2'" H N N 71 A23 "H1'" H N N 72 A23 H8 H N N 73 A23 HN61 H N N 74 A23 HN62 H N N 75 A23 H2 H N N 76 C OP3 O N N 77 C P P N N 78 C OP1 O N N 79 C OP2 O N N 80 C "O5'" O N N 81 C "C5'" C N N 82 C "C4'" C N R 83 C "O4'" O N N 84 C "C3'" C N S 85 C "O3'" O N N 86 C "C2'" C N R 87 C "O2'" O N N 88 C "C1'" C N R 89 C N1 N N N 90 C C2 C N N 91 C O2 O N N 92 C N3 N N N 93 C C4 C N N 94 C N4 N N N 95 C C5 C N N 96 C C6 C N N 97 C HOP3 H N N 98 C HOP2 H N N 99 C "H5'" H N N 100 C "H5''" H N N 101 C "H4'" H N N 102 C "H3'" H N N 103 C "HO3'" H N N 104 C "H2'" H N N 105 C "HO2'" H N N 106 C "H1'" H N N 107 C H41 H N N 108 C H42 H N N 109 C H5 H N N 110 C H6 H N N 111 G OP3 O N N 112 G P P N N 113 G OP1 O N N 114 G OP2 O N N 115 G "O5'" O N N 116 G "C5'" C N N 117 G "C4'" C N R 118 G "O4'" O N N 119 G "C3'" C N S 120 G "O3'" O N N 121 G "C2'" C N R 122 G "O2'" O N N 123 G "C1'" C N R 124 G N9 N Y N 125 G C8 C Y N 126 G N7 N Y N 127 G C5 C Y N 128 G C6 C N N 129 G O6 O N N 130 G N1 N N N 131 G C2 C N N 132 G N2 N N N 133 G N3 N N N 134 G C4 C Y N 135 G HOP3 H N N 136 G HOP2 H N N 137 G "H5'" H N N 138 G "H5''" H N N 139 G "H4'" H N N 140 G "H3'" H N N 141 G "HO3'" H N N 142 G "H2'" H N N 143 G "HO2'" H N N 144 G "H1'" H N N 145 G H8 H N N 146 G H1 H N N 147 G H21 H N N 148 G H22 H N N 149 HOH O O N N 150 HOH H1 H N N 151 HOH H2 H N N 152 MG MG MG N N 153 MN MN MN N N 154 TPP "N1'" N Y N 155 TPP "C2'" C Y N 156 TPP CM2 C N N 157 TPP "N3'" N Y N 158 TPP "C4'" C Y N 159 TPP "N4'" N N N 160 TPP "C5'" C Y N 161 TPP "C6'" C Y N 162 TPP "C7'" C N N 163 TPP N3 N Y N 164 TPP C2 C Y N 165 TPP S1 S Y N 166 TPP C5 C Y N 167 TPP C4 C Y N 168 TPP CM4 C N N 169 TPP C6 C N N 170 TPP C7 C N N 171 TPP O7 O N N 172 TPP PA P N S 173 TPP O1A O N N 174 TPP O2A O N N 175 TPP O3A O N N 176 TPP PB P N N 177 TPP O1B O N N 178 TPP O2B O N N 179 TPP O3B O N N 180 TPP HM21 H N N 181 TPP HM22 H N N 182 TPP HM23 H N N 183 TPP HN41 H N N 184 TPP HN42 H N N 185 TPP "H6'" H N N 186 TPP "H7'1" H N N 187 TPP "H7'2" H N N 188 TPP H2 H N N 189 TPP HM41 H N N 190 TPP HM42 H N N 191 TPP HM43 H N N 192 TPP H61 H N N 193 TPP H62 H N N 194 TPP H71 H N N 195 TPP H72 H N N 196 TPP HOA2 H N N 197 TPP HOB2 H N N 198 TPP HOB3 H N N 199 U OP3 O N N 200 U P P N N 201 U OP1 O N N 202 U OP2 O N N 203 U "O5'" O N N 204 U "C5'" C N N 205 U "C4'" C N R 206 U "O4'" O N N 207 U "C3'" C N S 208 U "O3'" O N N 209 U "C2'" C N R 210 U "O2'" O N N 211 U "C1'" C N R 212 U N1 N N N 213 U C2 C N N 214 U O2 O N N 215 U N3 N N N 216 U C4 C N N 217 U O4 O N N 218 U C5 C N N 219 U C6 C N N 220 U HOP3 H N N 221 U HOP2 H N N 222 U "H5'" H N N 223 U "H5''" H N N 224 U "H4'" H N N 225 U "H3'" H N N 226 U "HO3'" H N N 227 U "H2'" H N N 228 U "HO2'" H N N 229 U "H1'" H N N 230 U H3 H N N 231 U H5 H N N 232 U H6 H N N 233 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A23 PC O1C doub N N 40 A23 PC O2C sing N N 41 A23 PC "O3'" sing N N 42 A23 PC "O2'" sing N N 43 A23 O2C HOC2 sing N N 44 A23 P OP1 doub N N 45 A23 P OP2 sing N N 46 A23 P OP3 sing N N 47 A23 P "O5'" sing N N 48 A23 OP2 HOP2 sing N N 49 A23 OP3 HOP3 sing N N 50 A23 "O5'" "C5'" sing N N 51 A23 "C5'" "C4'" sing N N 52 A23 "C5'" "H5'" sing N N 53 A23 "C5'" "H5''" sing N N 54 A23 "C4'" "O4'" sing N N 55 A23 "C4'" "C3'" sing N N 56 A23 "C4'" "H4'" sing N N 57 A23 "O4'" "C1'" sing N N 58 A23 "C3'" "O3'" sing N N 59 A23 "C3'" "C2'" sing N N 60 A23 "C3'" "H3'" sing N N 61 A23 "C2'" "O2'" sing N N 62 A23 "C2'" "C1'" sing N N 63 A23 "C2'" "H2'" sing N N 64 A23 "C1'" N9 sing N N 65 A23 "C1'" "H1'" sing N N 66 A23 N9 C8 sing Y N 67 A23 N9 C4 sing Y N 68 A23 C8 N7 doub Y N 69 A23 C8 H8 sing N N 70 A23 N7 C5 sing Y N 71 A23 C5 C6 sing Y N 72 A23 C5 C4 doub Y N 73 A23 C6 N6 sing N N 74 A23 C6 N1 doub Y N 75 A23 N6 HN61 sing N N 76 A23 N6 HN62 sing N N 77 A23 N1 C2 sing Y N 78 A23 C2 N3 doub Y N 79 A23 C2 H2 sing N N 80 A23 N3 C4 sing Y N 81 C OP3 P sing N N 82 C OP3 HOP3 sing N N 83 C P OP1 doub N N 84 C P OP2 sing N N 85 C P "O5'" sing N N 86 C OP2 HOP2 sing N N 87 C "O5'" "C5'" sing N N 88 C "C5'" "C4'" sing N N 89 C "C5'" "H5'" sing N N 90 C "C5'" "H5''" sing N N 91 C "C4'" "O4'" sing N N 92 C "C4'" "C3'" sing N N 93 C "C4'" "H4'" sing N N 94 C "O4'" "C1'" sing N N 95 C "C3'" "O3'" sing N N 96 C "C3'" "C2'" sing N N 97 C "C3'" "H3'" sing N N 98 C "O3'" "HO3'" sing N N 99 C "C2'" "O2'" sing N N 100 C "C2'" "C1'" sing N N 101 C "C2'" "H2'" sing N N 102 C "O2'" "HO2'" sing N N 103 C "C1'" N1 sing N N 104 C "C1'" "H1'" sing N N 105 C N1 C2 sing N N 106 C N1 C6 sing N N 107 C C2 O2 doub N N 108 C C2 N3 sing N N 109 C N3 C4 doub N N 110 C C4 N4 sing N N 111 C C4 C5 sing N N 112 C N4 H41 sing N N 113 C N4 H42 sing N N 114 C C5 C6 doub N N 115 C C5 H5 sing N N 116 C C6 H6 sing N N 117 G OP3 P sing N N 118 G OP3 HOP3 sing N N 119 G P OP1 doub N N 120 G P OP2 sing N N 121 G P "O5'" sing N N 122 G OP2 HOP2 sing N N 123 G "O5'" "C5'" sing N N 124 G "C5'" "C4'" sing N N 125 G "C5'" "H5'" sing N N 126 G "C5'" "H5''" sing N N 127 G "C4'" "O4'" sing N N 128 G "C4'" "C3'" sing N N 129 G "C4'" "H4'" sing N N 130 G "O4'" "C1'" sing N N 131 G "C3'" "O3'" sing N N 132 G "C3'" "C2'" sing N N 133 G "C3'" "H3'" sing N N 134 G "O3'" "HO3'" sing N N 135 G "C2'" "O2'" sing N N 136 G "C2'" "C1'" sing N N 137 G "C2'" "H2'" sing N N 138 G "O2'" "HO2'" sing N N 139 G "C1'" N9 sing N N 140 G "C1'" "H1'" sing N N 141 G N9 C8 sing Y N 142 G N9 C4 sing Y N 143 G C8 N7 doub Y N 144 G C8 H8 sing N N 145 G N7 C5 sing Y N 146 G C5 C6 sing N N 147 G C5 C4 doub Y N 148 G C6 O6 doub N N 149 G C6 N1 sing N N 150 G N1 C2 sing N N 151 G N1 H1 sing N N 152 G C2 N2 sing N N 153 G C2 N3 doub N N 154 G N2 H21 sing N N 155 G N2 H22 sing N N 156 G N3 C4 sing N N 157 HOH O H1 sing N N 158 HOH O H2 sing N N 159 TPP "N1'" "C2'" doub Y N 160 TPP "N1'" "C6'" sing Y N 161 TPP "C2'" CM2 sing N N 162 TPP "C2'" "N3'" sing Y N 163 TPP CM2 HM21 sing N N 164 TPP CM2 HM22 sing N N 165 TPP CM2 HM23 sing N N 166 TPP "N3'" "C4'" doub Y N 167 TPP "C4'" "N4'" sing N N 168 TPP "C4'" "C5'" sing Y N 169 TPP "N4'" HN41 sing N N 170 TPP "N4'" HN42 sing N N 171 TPP "C5'" "C6'" doub Y N 172 TPP "C5'" "C7'" sing N N 173 TPP "C6'" "H6'" sing N N 174 TPP "C7'" N3 sing N N 175 TPP "C7'" "H7'1" sing N N 176 TPP "C7'" "H7'2" sing N N 177 TPP N3 C2 doub Y N 178 TPP N3 C4 sing Y N 179 TPP C2 S1 sing Y N 180 TPP C2 H2 sing N N 181 TPP S1 C5 sing Y N 182 TPP C5 C4 doub Y N 183 TPP C5 C6 sing N N 184 TPP C4 CM4 sing N N 185 TPP CM4 HM41 sing N N 186 TPP CM4 HM42 sing N N 187 TPP CM4 HM43 sing N N 188 TPP C6 C7 sing N N 189 TPP C6 H61 sing N N 190 TPP C6 H62 sing N N 191 TPP C7 O7 sing N N 192 TPP C7 H71 sing N N 193 TPP C7 H72 sing N N 194 TPP O7 PA sing N N 195 TPP PA O1A doub N N 196 TPP PA O2A sing N N 197 TPP PA O3A sing N N 198 TPP O2A HOA2 sing N N 199 TPP O3A PB sing N N 200 TPP PB O1B doub N N 201 TPP PB O2B sing N N 202 TPP PB O3B sing N N 203 TPP O2B HOB2 sing N N 204 TPP O3B HOB3 sing N N 205 U OP3 P sing N N 206 U OP3 HOP3 sing N N 207 U P OP1 doub N N 208 U P OP2 sing N N 209 U P "O5'" sing N N 210 U OP2 HOP2 sing N N 211 U "O5'" "C5'" sing N N 212 U "C5'" "C4'" sing N N 213 U "C5'" "H5'" sing N N 214 U "C5'" "H5''" sing N N 215 U "C4'" "O4'" sing N N 216 U "C4'" "C3'" sing N N 217 U "C4'" "H4'" sing N N 218 U "O4'" "C1'" sing N N 219 U "C3'" "O3'" sing N N 220 U "C3'" "C2'" sing N N 221 U "C3'" "H3'" sing N N 222 U "O3'" "HO3'" sing N N 223 U "C2'" "O2'" sing N N 224 U "C2'" "C1'" sing N N 225 U "C2'" "H2'" sing N N 226 U "O2'" "HO2'" sing N N 227 U "C1'" N1 sing N N 228 U "C1'" "H1'" sing N N 229 U N1 C2 sing N N 230 U N1 C6 sing N N 231 U C2 O2 doub N N 232 U C2 N3 sing N N 233 U N3 C4 sing N N 234 U N3 H3 sing N N 235 U C4 O4 doub N N 236 U C4 C5 sing N N 237 U C5 C6 doub N N 238 U C5 H5 sing N N 239 U C6 H6 sing N N 240 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7TDA 'double helix' 7TDA 'a-form double helix' 7TDA 'hairpin loop' 7TDA 'bulge loop' 7TDA 'mismatched base pair' 7TDA 'internal loop' 7TDA 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 82 1_555 -0.138 -0.158 0.492 3.917 -11.113 -0.067 1 A_G9:C90_A A 9 ? A 90 ? 19 1 1 A C 2 1_555 A G 81 1_555 0.260 -0.196 0.284 0.399 -12.265 -0.241 2 A_C10:G89_A A 10 ? A 89 ? 19 1 1 A G 3 1_555 A C 80 1_555 -0.162 -0.146 0.244 -3.765 -11.962 -0.944 3 A_G11:C88_A A 11 ? A 88 ? 19 1 1 A A 4 1_555 A U 79 1_555 0.022 -0.050 0.066 -2.206 -9.761 4.097 4 A_A12:U87_A A 12 ? A 87 ? 20 1 1 A C 5 1_555 A G 78 1_555 0.203 -0.174 0.186 -0.627 -11.859 -0.675 5 A_C13:G86_A A 13 ? A 86 ? 19 1 1 A U 6 1_555 A A 77 1_555 -0.069 0.139 0.030 -10.607 -8.998 5.839 6 A_U14:A85_A A 14 ? A 85 ? 20 1 1 A C 7 1_555 A G 43 1_555 0.151 -0.211 0.468 2.340 -6.633 -1.172 7 A_C15:G51_A A 15 ? A 51 ? 19 1 1 A G 8 1_555 A C 42 1_555 -0.217 -0.132 0.135 -5.110 -15.086 2.561 8 A_G16:C50_A A 16 ? A 50 ? 19 1 1 A G 9 1_555 A C 41 1_555 -0.309 -0.171 0.320 -15.048 -13.091 0.141 9 A_G17:C49_A A 17 ? A 49 ? 19 1 1 A G 10 1_555 A C 40 1_555 -0.158 -0.155 0.230 -8.202 -14.249 -2.758 10 A_G18:C48_A A 18 ? A 48 ? 19 1 1 A G 11 1_555 A A 39 1_555 -0.031 1.619 -0.283 -1.680 -8.384 -23.337 11 A_G19:A47_A A 19 ? A 47 ? 8 1 1 A U 12 1_555 A A 37 1_555 0.068 -0.095 -0.056 9.531 3.160 7.702 12 A_U20:A45_A A 20 ? A 45 ? 20 1 1 A A 27 1_555 A C 16 1_555 -3.739 -0.953 -0.608 -12.393 3.498 -15.115 13 A_A35:C24_A A 35 ? A 24 ? ? 1 1 A G 28 1_555 A C 15 1_555 -0.244 -0.127 -0.093 3.947 -1.716 1.816 14 A_G36:C23_A A 36 ? A 23 ? 19 1 1 A G 29 1_555 A C 14 1_555 -0.348 -0.170 -0.012 -4.888 -2.056 2.096 15 A_G37:C22_A A 37 ? A 22 ? 19 1 1 A C 30 1_555 A G 13 1_555 0.254 -0.136 0.362 -10.406 5.659 -0.936 16 A_C38:G21_A A 38 ? A 21 ? 19 1 1 A U 31 1_555 A A 35 1_555 4.179 -2.067 0.549 7.508 8.797 -97.802 17 A_U39:A43_A A 39 ? A 43 ? 24 4 1 A A 45 1_555 A A 76 1_555 6.119 -5.144 0.178 -17.833 20.104 167.508 18 A_A53:A84_A A 53 ? A 84 ? 2 8 1 A A 48 1_555 A G 75 1_555 -6.720 -4.207 -0.028 8.660 -7.557 -6.679 19 A_A56:G83_A A 56 ? A 83 ? 11 10 1 A C 49 1_555 A G 74 1_555 0.251 -0.158 0.027 5.987 -10.339 0.429 20 A_C57:G82_A A 57 ? A 82 ? 19 1 1 A C 50 1_555 A G 73 1_555 0.187 -0.258 0.471 -0.772 -12.900 -2.793 21 A_C58:G81_A A 58 ? A 81 ? 19 1 1 A U 51 1_555 A A 72 1_555 -0.020 -0.148 -0.082 -9.934 -8.666 2.051 22 A_U59:A80_A A 59 ? A 80 ? 20 1 1 A G 52 1_555 A G 70 1_555 1.431 3.118 0.172 -8.986 6.065 -96.023 23 A_G60:G78_A A 60 ? A 78 ? 6 3 1 A A 53 1_555 A C 69 1_555 -2.236 2.526 0.251 -0.483 -1.595 105.157 24 A_A61:C77_A A 61 ? A 77 ? ? ? 1 A C 55 1_555 A G 68 1_555 0.233 -0.179 0.234 3.095 -10.417 1.656 25 A_C63:G76_A A 63 ? A 76 ? 19 1 1 A U 56 1_555 A A 67 1_555 -0.095 -0.119 0.355 1.994 -10.435 2.728 26 A_U64:A75_A A 64 ? A 75 ? 20 1 1 A G 57 1_555 A C 66 1_555 -0.204 -0.128 -0.161 -3.836 -9.550 1.618 27 A_G65:C74_A A 65 ? A 74 ? 19 1 1 A G 58 1_555 A C 65 1_555 -0.206 -0.174 -0.180 -1.769 -5.843 0.893 28 A_G66:C73_A A 66 ? A 73 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 82 1_555 A C 2 1_555 A G 81 1_555 0.129 -1.255 3.317 0.815 1.284 38.478 -2.063 -0.094 3.276 1.947 -1.236 38.507 1 AA_G9C10:G89C90_AA A 9 ? A 90 ? A 10 ? A 89 ? 1 A C 2 1_555 A G 81 1_555 A G 3 1_555 A C 80 1_555 0.008 -1.818 3.191 0.307 6.058 30.022 -4.547 0.040 2.779 11.546 -0.585 30.614 2 AA_C10G11:C88G89_AA A 10 ? A 89 ? A 11 ? A 88 ? 1 A G 3 1_555 A C 80 1_555 A A 4 1_555 A U 79 1_555 0.000 -1.397 3.155 -0.388 2.913 32.616 -2.954 -0.063 3.022 5.174 0.688 32.744 3 AA_G11A12:U87C88_AA A 11 ? A 88 ? A 12 ? A 87 ? 1 A A 4 1_555 A U 79 1_555 A C 5 1_555 A G 78 1_555 -0.642 -1.383 3.166 -2.612 4.117 31.901 -3.184 0.714 3.010 7.437 4.718 32.262 4 AA_A12C13:G86U87_AA A 12 ? A 87 ? A 13 ? A 86 ? 1 A C 5 1_555 A G 78 1_555 A U 6 1_555 A A 77 1_555 0.591 -0.852 3.389 4.639 4.651 34.214 -2.154 -0.260 3.297 7.815 -7.796 34.821 5 AA_C13U14:A85G86_AA A 13 ? A 86 ? A 14 ? A 85 ? 1 A U 6 1_555 A A 77 1_555 A C 7 1_555 A G 43 1_555 1.196 -0.796 2.929 -4.749 5.172 40.921 -1.597 -2.123 2.664 7.332 6.733 41.493 6 AA_U14C15:G51A85_AA A 14 ? A 85 ? A 15 ? A 51 ? 1 A C 7 1_555 A G 43 1_555 A G 8 1_555 A C 42 1_555 0.732 -1.917 3.215 1.242 8.708 30.494 -4.966 -1.132 2.609 16.139 -2.301 31.708 7 AA_C15G16:C50G51_AA A 15 ? A 51 ? A 16 ? A 50 ? 1 A G 8 1_555 A C 42 1_555 A G 9 1_555 A C 41 1_555 -0.697 -1.762 3.471 -3.885 1.270 34.721 -3.137 0.536 3.461 2.119 6.483 34.953 8 AA_G16G17:C49C50_AA A 16 ? A 50 ? A 17 ? A 49 ? 1 A G 9 1_555 A C 41 1_555 A G 10 1_555 A C 40 1_555 -0.008 -1.681 3.063 4.273 5.423 30.967 -3.969 0.716 2.711 10.002 -7.881 31.709 9 AA_G17G18:C48C49_AA A 17 ? A 49 ? A 18 ? A 48 ? 1 A G 10 1_555 A C 40 1_555 A G 11 1_555 A A 39 1_555 -1.187 -0.853 3.094 6.974 3.559 36.279 -1.771 2.708 2.734 5.635 -11.042 37.086 10 AA_G18G19:A47C48_AA A 18 ? A 48 ? A 19 ? A 47 ? 1 A G 11 1_555 A A 39 1_555 A U 12 1_555 A A 37 1_555 0.483 0.493 3.276 0.763 10.320 7.142 -11.056 -1.222 2.298 55.326 -4.090 12.568 11 AA_G19U20:A45A47_AA A 19 ? A 47 ? A 20 ? A 45 ? 1 A A 27 1_555 A C 16 1_555 A G 28 1_555 A C 15 1_555 1.386 -1.016 3.010 -9.830 8.628 43.490 -1.970 -2.541 2.424 11.342 12.922 45.322 12 AA_A35G36:C23C24_AA A 35 ? A 24 ? A 36 ? A 23 ? 1 A G 28 1_555 A C 15 1_555 A G 29 1_555 A C 14 1_555 -0.603 -2.009 3.268 -4.266 10.340 33.917 -4.666 0.413 2.617 17.156 7.077 35.662 13 AA_G36G37:C22C23_AA A 36 ? A 23 ? A 37 ? A 22 ? 1 A G 29 1_555 A C 14 1_555 A C 30 1_555 A G 13 1_555 -0.326 -2.082 3.476 0.472 7.660 35.894 -4.355 0.583 2.979 12.258 -0.755 36.679 14 AA_G37C38:G21C22_AA A 37 ? A 22 ? A 38 ? A 21 ? 1 A C 30 1_555 A G 13 1_555 A U 31 1_555 A A 35 1_555 -3.166 -1.202 2.889 9.865 5.324 69.480 -1.197 3.034 2.392 4.641 -8.599 70.266 15 AA_C38U39:A43G21_AA A 38 ? A 21 ? A 39 ? A 43 ? 1 A A 45 1_555 A A 76 1_555 A A 48 1_555 A G 75 1_555 -2.327 -2.037 0.246 144.851 -83.306 -31.283 1.267 -0.749 1.031 43.999 76.504 -167.578 16 AA_A53A56:G83A84_AA A 53 ? A 84 ? A 56 ? A 83 ? 1 A A 48 1_555 A G 75 1_555 A C 49 1_555 A G 74 1_555 0.877 -0.838 3.527 -3.698 4.550 64.417 -0.988 -0.986 3.418 4.259 3.461 64.655 17 AA_A56C57:G82G83_AA A 56 ? A 83 ? A 57 ? A 82 ? 1 A C 49 1_555 A G 74 1_555 A C 50 1_555 A G 73 1_555 -0.705 -2.140 3.268 -5.382 7.543 30.238 -5.247 0.355 2.749 14.051 10.025 31.594 18 AA_C57C58:G81G82_AA A 57 ? A 82 ? A 58 ? A 81 ? 1 A C 50 1_555 A G 73 1_555 A U 51 1_555 A A 72 1_555 0.109 -1.198 3.397 2.580 4.819 38.809 -2.374 0.151 3.232 7.209 -3.860 39.177 19 AA_C58U59:A80G81_AA A 58 ? A 81 ? A 59 ? A 80 ? 1 A U 51 1_555 A A 72 1_555 A G 52 1_555 A G 70 1_555 2.157 -1.812 2.804 12.197 7.329 93.118 -1.357 -1.280 2.892 5.024 -8.361 93.951 20 AA_U59G60:G78A80_AA A 59 ? A 80 ? A 60 ? A 78 ? 1 A G 52 1_555 A G 70 1_555 A A 53 1_555 A C 69 1_555 2.800 1.720 0.666 24.298 -167.269 -162.301 -0.802 1.409 0.857 83.699 12.159 -178.314 21 AA_G60A61:C77G78_AA A 60 ? A 78 ? A 61 ? A 77 ? 1 A A 53 1_555 A C 69 1_555 A C 55 1_555 A G 68 1_555 -3.269 -1.020 -1.457 101.388 -135.506 0.960 -1.553 0.863 -1.154 -72.026 -53.891 169.238 22 AA_A61C63:G76C77_AA A 61 ? A 77 ? A 63 ? A 76 ? 1 A C 55 1_555 A G 68 1_555 A U 56 1_555 A A 67 1_555 -0.013 -1.700 3.194 -3.545 3.480 33.154 -3.493 -0.531 2.991 6.057 6.169 33.513 23 AA_C63U64:A75G76_AA A 63 ? A 76 ? A 64 ? A 75 ? 1 A U 56 1_555 A A 67 1_555 A G 57 1_555 A C 66 1_555 -0.313 -1.525 3.089 2.043 12.748 31.259 -4.394 0.822 2.286 22.493 -3.604 33.758 24 AA_U64G65:C74A75_AA A 64 ? A 75 ? A 65 ? A 74 ? 1 A G 57 1_555 A C 66 1_555 A G 58 1_555 A C 65 1_555 0.467 -1.970 3.312 1.989 1.952 32.579 -3.837 -0.486 3.214 3.472 -3.537 32.695 25 AA_G65G66:C73C74_AA A 65 ? A 74 ? A 66 ? A 73 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01GM112940 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 A23 ? ? A23 ? ? 'SUBJECT OF INVESTIGATION' ? 2 TPP ? ? TPP ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'THIAMINE DIPHOSPHATE' TPP 3 'MAGNESIUM ION' MG 4 'MANGANESE (II) ION' MN 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2HOJ _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #