HEADER DNA BINDING PROTEIN/DNA 04-JAN-22 7TEA TITLE CRYSTAL STRUCTURE OF S. AUREUS GLNR-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINE SYNTHETASE REPRESSOR; COMPND 3 CHAIN: B, E, A, C; COMPND 4 SYNONYM: GLUTAMINE SYNTHETASE,GLUTAMINE SYNTHETASE REPRESSOR,HTH-TYPE COMPND 5 TRANSCRIPTIONAL REGULATOR GLNR,MERR FAMILY TRANSCRIPTIONAL REGULATOR, COMPND 6 GLUTAMINE SYNTHETASE REPRESSOR,TRANSCRIPTIONAL REGULATOR (NITROGEN COMPND 7 METABOLISM),TRANSCRIPTIONAL REGULATOR,MERR FAMILY,MERR FAMILY COMPND 8 PROTEIN, FEMC, FACTOR INVOLVED IN METHICILLIN RESISTANCE; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DNA (5'- COMPND 12 D(*CP*GP*TP*GP*TP*CP*AP*GP*AP*TP*AP*AP*TP*CP*TP*GP*AP*CP*AP*CP*G)- COMPND 13 3'); COMPND 14 CHAIN: G, D; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: SYNTHETIC GLNR OPERATOR DNA; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: DNA (5'- COMPND 19 D(*CP*GP*TP*GP*TP*CP*AP*GP*AP*TP*TP*AP*TP*CP*TP*GP*AP*CP*AP*CP*G)- COMPND 20 3'); COMPND 21 CHAIN: F, H; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: GLNR, FEMC, BN1321_240156, BSG37_06895, BTN44_06150, SOURCE 5 C7P97_11270, CFN13_06110, CSC87_13065, CV021_11625, DD547_01329, SOURCE 6 DQU54_07135, E3A28_02075, E3K14_06475, E4U00_04150, E5491_06810, SOURCE 7 ELP52_06590, FA040_05040, FAF32_003415, FPP26_06465, FVP29_03765, SOURCE 8 G6X35_05925, G6X37_15500, G6Y24_07775, GO782_03725, GO788_03065, SOURCE 9 GO793_18140, GO810_03920, GO814_05910, GO941_02620, GO942_07700, SOURCE 10 GQX37_02050, GZ128_03000, GZ145_02540, HMPREF3211_01353, SOURCE 11 NCTC10654_01351, NCTC10702_02054, NCTC5664_02143, NCTC6133_01601, SOURCE 12 RK64_06965, SA0759_02803, SA950122_02714, SAGV51_01473, SOURCE 13 SAGV69_01244, SAHC1335_02241, SAJPND4_01239, SAMEA1029536_01443, SOURCE 14 SAMEA103891420_00579, SAMEA103891454_00903, SAMEA2076468_01609, SOURCE 15 SAMEA2076503_01121, SAMEA2077334_01678, SAMEA2078260_01440, SOURCE 16 SAMEA2078588_01695, SAMEA2079501_01495, SAMEA2080344_01609, SOURCE 17 SAMEA2081063_01288, SAMEA4008569_01468, SAMEA70146418_02626, SOURCE 18 SAMEA70245418_01181; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 MOL_ID: 2; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 24 ORGANISM_TAXID: 1280; SOURCE 25 MOL_ID: 3; SOURCE 26 SYNTHETIC: YES; SOURCE 27 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 28 ORGANISM_TAXID: 1280 KEYWDS GLNR, WINGED-HTH, S. AUREUS, FEMC, GLUTAMINE SYNTHETASE, KEYWDS 2 TRANSCRIPTION REPRESSOR, DNA BINDING PROTEIN, DNA BINDING PROTEIN- KEYWDS 3 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER REVDAT 3 18-OCT-23 7TEA 1 REMARK REVDAT 2 10-AUG-22 7TEA 1 JRNL REVDAT 1 29-JUN-22 7TEA 0 JRNL AUTH B.A.TRAVIS,J.V.PECK,R.SALINAS,B.DOPKINS,N.LENT,V.D.NGUYEN, JRNL AUTH 2 M.J.BORGNIA,R.G.BRENNAN,M.A.SCHUMACHER JRNL TITL MOLECULAR DISSECTION OF THE GLUTAMINE SYNTHETASE-GLNR JRNL TITL 2 NITROGEN REGULATORY CIRCUITRY IN GRAM-POSITIVE BACTERIA. JRNL REF NAT COMMUN V. 13 3793 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35778410 JRNL DOI 10.1038/S41467-022-31573-0 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 31531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.330 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6300 - 5.6700 0.99 2369 159 0.1769 0.2116 REMARK 3 2 5.6700 - 4.5000 1.00 2272 154 0.1588 0.2247 REMARK 3 3 4.5000 - 3.9300 1.00 2241 152 0.1608 0.2387 REMARK 3 4 3.9300 - 3.5700 1.00 2244 152 0.2042 0.2636 REMARK 3 5 3.5700 - 3.3200 0.99 2179 148 0.2098 0.2507 REMARK 3 6 3.3200 - 3.1200 0.99 2216 151 0.2318 0.2633 REMARK 3 7 3.1200 - 2.9700 1.00 2208 147 0.2720 0.3396 REMARK 3 8 2.9700 - 2.8400 1.00 2201 147 0.2754 0.3188 REMARK 3 9 2.8400 - 2.7300 1.00 2174 148 0.2791 0.3275 REMARK 3 10 2.7300 - 2.6300 1.00 2201 149 0.3309 0.3737 REMARK 3 11 2.6300 - 2.5500 0.98 2154 145 0.3552 0.4453 REMARK 3 12 2.5500 - 2.4800 0.92 1997 135 0.4016 0.4119 REMARK 3 13 2.4800 - 2.4100 0.83 1836 125 0.4564 0.5223 REMARK 3 14 2.4100 - 2.3500 0.57 1244 83 0.5126 0.4415 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4537 REMARK 3 ANGLE : 1.116 6458 REMARK 3 CHIRALITY : 0.053 734 REMARK 3 PLANARITY : 0.006 525 REMARK 3 DIHEDRAL : 28.407 1170 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 41.7984 61.1108 91.5599 REMARK 3 T TENSOR REMARK 3 T11: 0.2738 T22: 0.3934 REMARK 3 T33: 0.3680 T12: 0.1125 REMARK 3 T13: 0.0497 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.8718 L22: 1.7811 REMARK 3 L33: 0.5197 L12: 0.9619 REMARK 3 L13: 0.0279 L23: 0.2246 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: 0.0901 S13: 0.0600 REMARK 3 S21: -0.0448 S22: 0.1156 S23: 0.1203 REMARK 3 S31: 0.0162 S32: 0.0346 S33: -0.0574 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TEA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262147. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.09 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31531 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 49.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53600 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R4E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM CACODYLATE PH 6.5, 13% REMARK 280 PEG 8000, 0.15 M CALCIUM ACETATE, 20% GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 275K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.25100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.46100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.63250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 119.46100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.25100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.63250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.25100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.63250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 119.46100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.63250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.25100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 119.46100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, G, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 ASN B 4 REMARK 465 ASP B 5 REMARK 465 GLY E -2 REMARK 465 SER E -1 REMARK 465 HIS E 0 REMARK 465 MET E 1 REMARK 465 ILE E 2 REMARK 465 SER E 3 REMARK 465 ASN E 4 REMARK 465 ASP E 5 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 ASP A 5 REMARK 465 ILE A 78 REMARK 465 GLN A 83 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 ILE C 2 REMARK 465 SER C 3 REMARK 465 ASN C 4 REMARK 465 ASP C 5 REMARK 465 SER C 82 REMARK 465 GLN C 83 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 TYR B 80 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 32 OP2 DG G 1 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO E 27 N PRO E 27 CA 0.222 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO E 27 C - N - CA ANGL. DEV. = 17.6 DEGREES REMARK 500 PRO E 27 CA - N - CD ANGL. DEV. = -9.6 DEGREES REMARK 500 DG D 1 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS E 40 85.81 -152.23 REMARK 500 TYR C 80 33.69 -99.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG E 43 O REMARK 620 2 ARG E 43 O 0.0 REMARK 620 3 HOH E 201 O 88.1 88.1 REMARK 620 4 HOH E 201 O 88.1 88.1 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 42 OE1 REMARK 620 2 GLU C 42 OE1 0.0 REMARK 620 3 ARG C 43 O 74.3 74.3 REMARK 620 4 ARG C 43 O 74.3 74.3 0.0 REMARK 620 5 HOH C 201 O 173.9 173.9 99.5 99.5 REMARK 620 6 HOH C 201 O 173.9 173.9 99.6 99.6 0.0 REMARK 620 7 HOH C 216 O 82.6 82.6 124.6 124.6 101.6 101.6 REMARK 620 N 1 2 3 4 5 6 DBREF 7TEA B 1 83 UNP Q53687 Q53687_STAAU 1 83 DBREF 7TEA E 1 83 UNP Q53687 Q53687_STAAU 1 83 DBREF 7TEA G 0 20 PDB 7TEA 7TEA 0 20 DBREF 7TEA F 0 20 PDB 7TEA 7TEA 0 20 DBREF 7TEA A 1 83 UNP Q53687 Q53687_STAAU 1 83 DBREF 7TEA C 1 83 UNP Q53687 Q53687_STAAU 1 83 DBREF 7TEA D 0 20 PDB 7TEA 7TEA 0 20 DBREF 7TEA H 0 20 PDB 7TEA 7TEA 0 20 SEQADV 7TEA GLY B -2 UNP Q53687 EXPRESSION TAG SEQADV 7TEA SER B -1 UNP Q53687 EXPRESSION TAG SEQADV 7TEA HIS B 0 UNP Q53687 EXPRESSION TAG SEQADV 7TEA GLU B 74 UNP Q53687 GLY 74 CONFLICT SEQADV 7TEA GLY E -2 UNP Q53687 EXPRESSION TAG SEQADV 7TEA SER E -1 UNP Q53687 EXPRESSION TAG SEQADV 7TEA HIS E 0 UNP Q53687 EXPRESSION TAG SEQADV 7TEA GLU E 74 UNP Q53687 GLY 74 CONFLICT SEQADV 7TEA GLY A -2 UNP Q53687 EXPRESSION TAG SEQADV 7TEA SER A -1 UNP Q53687 EXPRESSION TAG SEQADV 7TEA HIS A 0 UNP Q53687 EXPRESSION TAG SEQADV 7TEA GLU A 74 UNP Q53687 GLY 74 CONFLICT SEQADV 7TEA GLY C -2 UNP Q53687 EXPRESSION TAG SEQADV 7TEA SER C -1 UNP Q53687 EXPRESSION TAG SEQADV 7TEA HIS C 0 UNP Q53687 EXPRESSION TAG SEQADV 7TEA GLU C 74 UNP Q53687 GLY 74 CONFLICT SEQRES 1 B 86 GLY SER HIS MET ILE SER ASN ASP ALA ILE ARG ARG ASN SEQRES 2 B 86 MET ALA VAL PHE SER MET SER VAL VAL SER LYS LEU THR SEQRES 3 B 86 ASP LEU THR PRO ARG GLN ILE ARG TYR TYR GLU THR HIS SEQRES 4 B 86 GLU LEU ILE LYS PRO GLU ARG THR GLU GLY GLN LYS ARG SEQRES 5 B 86 LEU PHE SER LEU ASN ASP LEU GLU ARG LEU LEU GLU ILE SEQRES 6 B 86 LYS SER LEU LEU GLU LYS GLY PHE ASN ILE LYS GLU ILE SEQRES 7 B 86 LYS GLN ILE ILE TYR ASP SER GLN SEQRES 1 E 86 GLY SER HIS MET ILE SER ASN ASP ALA ILE ARG ARG ASN SEQRES 2 E 86 MET ALA VAL PHE SER MET SER VAL VAL SER LYS LEU THR SEQRES 3 E 86 ASP LEU THR PRO ARG GLN ILE ARG TYR TYR GLU THR HIS SEQRES 4 E 86 GLU LEU ILE LYS PRO GLU ARG THR GLU GLY GLN LYS ARG SEQRES 5 E 86 LEU PHE SER LEU ASN ASP LEU GLU ARG LEU LEU GLU ILE SEQRES 6 E 86 LYS SER LEU LEU GLU LYS GLY PHE ASN ILE LYS GLU ILE SEQRES 7 E 86 LYS GLN ILE ILE TYR ASP SER GLN SEQRES 1 G 21 DC DG DT DG DT DC DA DG DA DT DA DA DT SEQRES 2 G 21 DC DT DG DA DC DA DC DG SEQRES 1 F 21 DC DG DT DG DT DC DA DG DA DT DT DA DT SEQRES 2 F 21 DC DT DG DA DC DA DC DG SEQRES 1 A 86 GLY SER HIS MET ILE SER ASN ASP ALA ILE ARG ARG ASN SEQRES 2 A 86 MET ALA VAL PHE SER MET SER VAL VAL SER LYS LEU THR SEQRES 3 A 86 ASP LEU THR PRO ARG GLN ILE ARG TYR TYR GLU THR HIS SEQRES 4 A 86 GLU LEU ILE LYS PRO GLU ARG THR GLU GLY GLN LYS ARG SEQRES 5 A 86 LEU PHE SER LEU ASN ASP LEU GLU ARG LEU LEU GLU ILE SEQRES 6 A 86 LYS SER LEU LEU GLU LYS GLY PHE ASN ILE LYS GLU ILE SEQRES 7 A 86 LYS GLN ILE ILE TYR ASP SER GLN SEQRES 1 C 86 GLY SER HIS MET ILE SER ASN ASP ALA ILE ARG ARG ASN SEQRES 2 C 86 MET ALA VAL PHE SER MET SER VAL VAL SER LYS LEU THR SEQRES 3 C 86 ASP LEU THR PRO ARG GLN ILE ARG TYR TYR GLU THR HIS SEQRES 4 C 86 GLU LEU ILE LYS PRO GLU ARG THR GLU GLY GLN LYS ARG SEQRES 5 C 86 LEU PHE SER LEU ASN ASP LEU GLU ARG LEU LEU GLU ILE SEQRES 6 C 86 LYS SER LEU LEU GLU LYS GLY PHE ASN ILE LYS GLU ILE SEQRES 7 C 86 LYS GLN ILE ILE TYR ASP SER GLN SEQRES 1 D 21 DC DG DT DG DT DC DA DG DA DT DA DA DT SEQRES 2 D 21 DC DT DG DA DC DA DC DG SEQRES 1 H 21 DC DG DT DG DT DC DA DG DA DT DT DA DT SEQRES 2 H 21 DC DT DG DA DC DA DC DG HET CA E 101 1 HET CA C 101 1 HETNAM CA CALCIUM ION FORMUL 9 CA 2(CA 2+) FORMUL 11 HOH *91(H2 O) HELIX 1 AA1 SER B 15 ASP B 24 1 10 HELIX 2 AA2 THR B 26 HIS B 36 1 11 HELIX 3 AA3 SER B 52 LYS B 68 1 17 HELIX 4 AA4 ASN B 71 TYR B 80 1 10 HELIX 5 AA5 MET E 16 ASP E 24 1 9 HELIX 6 AA6 THR E 26 HIS E 36 1 11 HELIX 7 AA7 SER E 52 LYS E 68 1 17 HELIX 8 AA8 ASN E 71 TYR E 80 1 10 HELIX 9 AA9 SER A 15 ASP A 24 1 10 HELIX 10 AB1 THR A 26 HIS A 36 1 11 HELIX 11 AB2 SER A 52 LYS A 68 1 17 HELIX 12 AB3 ASN A 71 GLN A 77 1 7 HELIX 13 AB4 MET C 16 ASP C 24 1 9 HELIX 14 AB5 THR C 26 HIS C 36 1 11 HELIX 15 AB6 SER C 52 LYS C 68 1 17 HELIX 16 AB7 ASN C 71 TYR C 80 1 10 SHEET 1 AA1 2 GLU B 42 ARG B 43 0 SHEET 2 AA1 2 ARG B 49 LEU B 50 -1 O LEU B 50 N GLU B 42 SHEET 1 AA2 3 PHE E 14 SER E 15 0 SHEET 2 AA2 3 ARG E 49 PHE E 51 -1 O PHE E 51 N PHE E 14 SHEET 3 AA2 3 GLU E 42 ARG E 43 -1 N GLU E 42 O LEU E 50 SHEET 1 AA3 2 GLU A 42 ARG A 43 0 SHEET 2 AA3 2 ARG A 49 LEU A 50 -1 O LEU A 50 N GLU A 42 SHEET 1 AA4 3 PHE C 14 SER C 15 0 SHEET 2 AA4 3 ARG C 49 PHE C 51 -1 O PHE C 51 N PHE C 14 SHEET 3 AA4 3 GLU C 42 ARG C 43 -1 N GLU C 42 O LEU C 50 LINK O ARG E 43 CA CA E 101 1555 1555 2.43 LINK O ARG E 43 CA CA E 101 1555 6655 2.56 LINK CA CA E 101 O HOH E 201 1555 1555 2.39 LINK CA CA E 101 O HOH E 201 1555 6655 2.39 LINK OE1 GLU C 42 CA CA C 101 1555 1555 2.29 LINK OE1 GLU C 42 CA CA C 101 1555 6765 3.17 LINK O ARG C 43 CA CA C 101 1555 1555 2.21 LINK O ARG C 43 CA CA C 101 1555 6765 2.83 LINK CA CA C 101 O HOH C 201 1555 1555 2.50 LINK CA CA C 101 O HOH C 201 1555 6765 2.50 LINK CA CA C 101 O HOH C 216 1555 1555 2.97 CRYST1 66.502 99.265 238.922 90.00 90.00 90.00 I 21 21 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015037 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004185 0.00000