HEADER METAL BINDING PROTEIN 07-JAN-22 7TG5 TITLE CRYSTAL STRUCTURE OF THE PIRIN FAMILY PROTEIN REDOX-SENSITIVE BICUPIN TITLE 2 YHAK IN THE PRESENCE OF FE ION FROM YERSINIA PESTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PIRIN FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PIRIN-RELATED PROTEIN, YHAK; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS CO92; SOURCE 3 ORGANISM_TAXID: 214092; SOURCE 4 GENE: YP02149; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS PIRIN FAMILY PROTEIN, BICUPIN, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, METAL BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,G.CHHOR,M.ENDRES,G.BABNIGG,O.SCHNEEWIND,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 1 19-JAN-22 7TG5 0 JRNL AUTH Y.KIM,G.CHHOR,M.ENDRES,G.BABNIGG,O.SCHNEEWIND,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE PIRIN FAMILY PROTEIN JRNL TITL 2 REDOX-SENSITIVE BICUPIN YHAK IN THE PRESENCE OF FE ION FROM JRNL TITL 3 YERSINIA PESTIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.450 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 62864 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 3010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.8700 - 4.6700 0.93 2925 208 0.1349 0.1801 REMARK 3 2 4.6600 - 3.7100 0.95 2983 157 0.1054 0.1530 REMARK 3 3 3.7000 - 3.2400 0.96 3031 130 0.1392 0.1732 REMARK 3 4 3.2400 - 2.9400 0.96 3012 110 0.1625 0.2301 REMARK 3 5 2.9400 - 2.7300 0.95 2994 156 0.1807 0.2216 REMARK 3 6 2.7300 - 2.5700 0.94 2977 178 0.1894 0.2482 REMARK 3 7 2.5700 - 2.4400 0.95 3005 154 0.1996 0.2142 REMARK 3 8 2.4400 - 2.3400 0.96 3008 130 0.2012 0.2414 REMARK 3 9 2.3300 - 2.2500 0.96 3008 128 0.2045 0.2749 REMARK 3 10 2.2500 - 2.1700 0.95 2996 162 0.1977 0.1787 REMARK 3 11 2.1700 - 2.1000 0.95 3027 154 0.2097 0.2646 REMARK 3 12 2.1000 - 2.0400 0.95 2944 166 0.2119 0.2152 REMARK 3 13 2.0400 - 1.9900 0.96 3029 114 0.2117 0.2524 REMARK 3 14 1.9900 - 1.9400 0.96 2984 136 0.2145 0.2532 REMARK 3 15 1.9400 - 1.8900 0.95 2960 165 0.2151 0.2636 REMARK 3 16 1.8900 - 1.8500 0.96 3060 113 0.2315 0.1992 REMARK 3 17 1.8500 - 1.8200 0.95 2984 164 0.2485 0.3053 REMARK 3 18 1.8200 - 1.7800 0.96 3003 130 0.2615 0.2969 REMARK 3 19 1.7800 - 1.7500 0.93 2933 212 0.2672 0.3120 REMARK 3 20 1.7500 - 1.7200 0.95 2993 141 0.2925 0.2983 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4511 REMARK 3 ANGLE : 0.642 6141 REMARK 3 CHIRALITY : 0.047 655 REMARK 3 PLANARITY : 0.004 821 REMARK 3 DIHEDRAL : 13.690 1627 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3111 52.3338 -3.0328 REMARK 3 T TENSOR REMARK 3 T11: 0.1854 T22: 0.1777 REMARK 3 T33: 0.1258 T12: 0.0056 REMARK 3 T13: -0.0327 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.3332 L22: 0.7381 REMARK 3 L33: 3.8466 L12: 0.1726 REMARK 3 L13: 1.0115 L23: 0.4430 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: 0.2569 S13: -0.1249 REMARK 3 S21: -0.0737 S22: -0.1303 S23: 0.0422 REMARK 3 S31: -0.0218 S32: -0.4806 S33: 0.0973 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.1643 46.9019 1.6241 REMARK 3 T TENSOR REMARK 3 T11: 0.1345 T22: 0.2373 REMARK 3 T33: 0.1625 T12: -0.0096 REMARK 3 T13: -0.0342 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 4.7712 L22: 3.1044 REMARK 3 L33: 2.1978 L12: -3.3457 REMARK 3 L13: -1.8862 L23: 0.6110 REMARK 3 S TENSOR REMARK 3 S11: 0.2149 S12: 0.0520 S13: -0.3201 REMARK 3 S21: -0.1513 S22: -0.2557 S23: 0.3239 REMARK 3 S31: -0.0563 S32: -0.4436 S33: 0.0725 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8823 50.0133 17.6941 REMARK 3 T TENSOR REMARK 3 T11: 0.1555 T22: 0.2500 REMARK 3 T33: 0.1279 T12: 0.0256 REMARK 3 T13: -0.0206 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.3568 L22: 1.3888 REMARK 3 L33: 1.0959 L12: -0.0166 REMARK 3 L13: -0.4753 L23: 0.7181 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: -0.1030 S13: -0.0033 REMARK 3 S21: 0.1945 S22: -0.0209 S23: -0.0679 REMARK 3 S31: 0.0402 S32: 0.0451 S33: -0.0313 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7615 57.3253 18.1675 REMARK 3 T TENSOR REMARK 3 T11: 0.1339 T22: 0.1901 REMARK 3 T33: 0.1097 T12: 0.0035 REMARK 3 T13: -0.0106 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.8617 L22: 1.4923 REMARK 3 L33: 5.6138 L12: -0.8941 REMARK 3 L13: -2.2671 L23: 1.3132 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: -0.0746 S13: -0.0399 REMARK 3 S21: 0.1344 S22: -0.0204 S23: 0.1055 REMARK 3 S31: -0.0511 S32: 0.1273 S33: 0.0006 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4343 50.7739 6.7227 REMARK 3 T TENSOR REMARK 3 T11: 0.1034 T22: 0.2464 REMARK 3 T33: 0.1206 T12: 0.0086 REMARK 3 T13: -0.0198 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.8116 L22: 3.2832 REMARK 3 L33: 1.6209 L12: 0.9314 REMARK 3 L13: -0.1662 L23: -0.6419 REMARK 3 S TENSOR REMARK 3 S11: -0.0369 S12: -0.1332 S13: 0.0365 REMARK 3 S21: 0.1162 S22: 0.0106 S23: -0.1548 REMARK 3 S31: -0.0800 S32: 0.2352 S33: 0.0657 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4670 58.1933 -7.7187 REMARK 3 T TENSOR REMARK 3 T11: 0.1843 T22: 0.2457 REMARK 3 T33: 0.0956 T12: -0.0011 REMARK 3 T13: -0.0083 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 2.4733 L22: 4.3943 REMARK 3 L33: 0.8346 L12: -1.6724 REMARK 3 L13: 0.8334 L23: -0.3979 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: 0.1440 S13: 0.1812 REMARK 3 S21: -0.2481 S22: -0.1309 S23: -0.0423 REMARK 3 S31: -0.0911 S32: 0.0451 S33: 0.0990 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5334 33.1841 7.6743 REMARK 3 T TENSOR REMARK 3 T11: 0.2101 T22: 0.1907 REMARK 3 T33: 0.1491 T12: 0.0024 REMARK 3 T13: -0.0193 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.9057 L22: 4.0700 REMARK 3 L33: 2.9495 L12: 2.6363 REMARK 3 L13: -2.6988 L23: -1.8886 REMARK 3 S TENSOR REMARK 3 S11: -0.3242 S12: -0.1230 S13: -0.4875 REMARK 3 S21: -0.0317 S22: 0.0408 S23: -0.1669 REMARK 3 S31: 0.4952 S32: -0.0490 S33: 0.3055 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6623 43.1314 18.5795 REMARK 3 T TENSOR REMARK 3 T11: 0.1721 T22: 0.2207 REMARK 3 T33: 0.1166 T12: 0.0011 REMARK 3 T13: 0.0429 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.9079 L22: 0.9259 REMARK 3 L33: 2.2032 L12: -0.0893 REMARK 3 L13: -1.3616 L23: 0.5588 REMARK 3 S TENSOR REMARK 3 S11: 0.1484 S12: -0.1466 S13: -0.0870 REMARK 3 S21: 0.0670 S22: 0.0043 S23: 0.0073 REMARK 3 S31: -0.0235 S32: -0.1867 S33: -0.0602 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0486 44.6279 1.7098 REMARK 3 T TENSOR REMARK 3 T11: 0.1390 T22: 0.2371 REMARK 3 T33: 0.1112 T12: -0.0033 REMARK 3 T13: 0.0244 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.8102 L22: 1.9294 REMARK 3 L33: 1.0908 L12: 0.7799 REMARK 3 L13: 0.8185 L23: 0.9971 REMARK 3 S TENSOR REMARK 3 S11: 0.0476 S12: 0.0766 S13: 0.0145 REMARK 3 S21: -0.0432 S22: -0.0444 S23: -0.0310 REMARK 3 S31: 0.0314 S32: 0.0296 S33: 0.0008 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 126 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6106 44.5783 8.4662 REMARK 3 T TENSOR REMARK 3 T11: 0.1149 T22: 0.2599 REMARK 3 T33: 0.1077 T12: -0.0328 REMARK 3 T13: 0.0145 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 2.0553 L22: 3.7270 REMARK 3 L33: 1.2570 L12: -1.0320 REMARK 3 L13: 0.2615 L23: -0.8378 REMARK 3 S TENSOR REMARK 3 S11: -0.0766 S12: 0.1650 S13: -0.1073 REMARK 3 S21: -0.0010 S22: 0.0907 S23: -0.0245 REMARK 3 S31: -0.0130 S32: 0.1954 S33: -0.0410 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 186 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3147 46.8595 17.2006 REMARK 3 T TENSOR REMARK 3 T11: 0.1314 T22: 0.2349 REMARK 3 T33: 0.0873 T12: -0.0084 REMARK 3 T13: 0.0332 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 1.1000 L22: 2.0246 REMARK 3 L33: 0.8417 L12: -0.1934 REMARK 3 L13: 0.3810 L23: -0.5064 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: -0.1041 S13: 0.0284 REMARK 3 S21: 0.1268 S22: -0.0152 S23: 0.0305 REMARK 3 S31: 0.0174 S32: 0.0610 S33: 0.0222 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TG5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262170. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62979 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.58600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 0.1 M MES PH REMARK 280 6.5, 30 %(W/V) PEG 2000 MME, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.51333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.02667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ASN A 285 REMARK 465 MSE A 286 REMARK 465 ASP A 287 REMARK 465 VAL A 288 REMARK 465 ALA A 289 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 GLY B 284 REMARK 465 ASN B 285 REMARK 465 MSE B 286 REMARK 465 ASP B 287 REMARK 465 VAL B 288 REMARK 465 ALA B 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 217 -73.09 -130.91 REMARK 500 ARG A 221 -164.18 -125.27 REMARK 500 MSE A 265 -164.08 -126.66 REMARK 500 MSE B 135 35.32 -90.51 REMARK 500 TYR B 140 116.05 -163.49 REMARK 500 TYR B 140 118.46 -163.49 REMARK 500 ARG B 221 -167.06 -118.28 REMARK 500 MSE B 265 -157.63 -120.43 REMARK 500 ARG B 282 37.66 -82.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 61 NE2 REMARK 620 2 HIS A 105 NE2 93.6 REMARK 620 3 HOH A 450 O 111.7 128.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 61 NE2 REMARK 620 2 HIS B 63 NE2 117.9 REMARK 620 3 HIS B 105 NE2 82.0 93.7 REMARK 620 4 HOH B 445 O 147.8 90.4 81.3 REMARK 620 5 HOH B 491 O 99.1 123.5 134.7 74.3 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7TE5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE COMPLEX WITH MG ION REMARK 900 RELATED ID: IDP64164 RELATED DB: TARGETTRACK DBREF1 7TG5 A 1 289 UNP A0A2U2H063_YERPE DBREF2 7TG5 A A0A2U2H063 1 289 DBREF1 7TG5 B 1 289 UNP A0A2U2H063_YERPE DBREF2 7TG5 B A0A2U2H063 1 289 SEQADV 7TG5 SER A -2 UNP A0A2U2H06 EXPRESSION TAG SEQADV 7TG5 ASN A -1 UNP A0A2U2H06 EXPRESSION TAG SEQADV 7TG5 ALA A 0 UNP A0A2U2H06 EXPRESSION TAG SEQADV 7TG5 SER B -2 UNP A0A2U2H06 EXPRESSION TAG SEQADV 7TG5 ASN B -1 UNP A0A2U2H06 EXPRESSION TAG SEQADV 7TG5 ALA B 0 UNP A0A2U2H06 EXPRESSION TAG SEQRES 1 A 292 SER ASN ALA MSE LYS LYS VAL GLN GLY ILE TYR ARG ALA SEQRES 2 A 292 PRO ARG GLN HIS TRP VAL GLY ASP GLY PHE PRO VAL ARG SEQRES 3 A 292 SER MSE PHE SER TYR GLN SER HIS GLY LYS GLN LEU SER SEQRES 4 A 292 PRO PHE LEU LEU LEU ASP TYR ALA GLY PRO MSE ASP PHE SEQRES 5 A 292 THR PRO THR THR GLN ARG ARG GLY VAL GLY GLN HIS PRO SEQRES 6 A 292 HIS ARG GLY PHE GLU THR VAL THR ILE VAL TYR HIS GLY SEQRES 7 A 292 GLU VAL GLU HIS ARG ASP SER THR GLY ASN GLY GLY ILE SEQRES 8 A 292 ILE GLY PRO GLY ASP VAL GLN TRP MSE THR ALA GLY ALA SEQRES 9 A 292 GLY ILE LEU HIS GLU GLU PHE HIS SER ASP ALA PHE ALA SEQRES 10 A 292 GLN LYS GLY GLY PRO PHE GLU MSE VAL GLN LEU TRP VAL SEQRES 11 A 292 ASN LEU PRO ALA LYS ASP LYS MSE THR ALA PRO GLY TYR SEQRES 12 A 292 GLN ALA ILE ARG ARG GLU ALA ILE PRO GLN VAL ASN LEU SEQRES 13 A 292 PRO ASP ASP ALA GLY ASN LEU ARG VAL ILE ALA GLY GLU SEQRES 14 A 292 TYR ALA GLY ASN ILE GLY PRO ALA LYS THR PHE SER PRO SEQRES 15 A 292 LEU ASN VAL TRP ASP ILE ARG LEU THR GLN GLY LYS SER SEQRES 16 A 292 CYS GLU PHE SER LEU PRO ALA GLY TRP ASN THR ALA LEU SEQRES 17 A 292 ILE VAL LEU HIS GLY THR LEU LEU VAL ASN GLY ASP ALA SEQRES 18 A 292 ILE ALA ARG GLU ALA GLU MSE VAL LEU LEU ASP PRO THR SEQRES 19 A 292 GLY THR HIS LEU SER ILE GLU ALA ASN ASN ASP THR VAL SEQRES 20 A 292 LEU LEU LEU LEU SER GLY GLU PRO ILE ASP GLU PRO ILE SEQRES 21 A 292 VAL GLY TYR GLY PRO PHE VAL MSE ASN THR GLN ALA GLN SEQRES 22 A 292 ILE ALA GLU ALA ILE ALA ASP PHE ASN GLY GLY ARG PHE SEQRES 23 A 292 GLY ASN MSE ASP VAL ALA SEQRES 1 B 292 SER ASN ALA MSE LYS LYS VAL GLN GLY ILE TYR ARG ALA SEQRES 2 B 292 PRO ARG GLN HIS TRP VAL GLY ASP GLY PHE PRO VAL ARG SEQRES 3 B 292 SER MSE PHE SER TYR GLN SER HIS GLY LYS GLN LEU SER SEQRES 4 B 292 PRO PHE LEU LEU LEU ASP TYR ALA GLY PRO MSE ASP PHE SEQRES 5 B 292 THR PRO THR THR GLN ARG ARG GLY VAL GLY GLN HIS PRO SEQRES 6 B 292 HIS ARG GLY PHE GLU THR VAL THR ILE VAL TYR HIS GLY SEQRES 7 B 292 GLU VAL GLU HIS ARG ASP SER THR GLY ASN GLY GLY ILE SEQRES 8 B 292 ILE GLY PRO GLY ASP VAL GLN TRP MSE THR ALA GLY ALA SEQRES 9 B 292 GLY ILE LEU HIS GLU GLU PHE HIS SER ASP ALA PHE ALA SEQRES 10 B 292 GLN LYS GLY GLY PRO PHE GLU MSE VAL GLN LEU TRP VAL SEQRES 11 B 292 ASN LEU PRO ALA LYS ASP LYS MSE THR ALA PRO GLY TYR SEQRES 12 B 292 GLN ALA ILE ARG ARG GLU ALA ILE PRO GLN VAL ASN LEU SEQRES 13 B 292 PRO ASP ASP ALA GLY ASN LEU ARG VAL ILE ALA GLY GLU SEQRES 14 B 292 TYR ALA GLY ASN ILE GLY PRO ALA LYS THR PHE SER PRO SEQRES 15 B 292 LEU ASN VAL TRP ASP ILE ARG LEU THR GLN GLY LYS SER SEQRES 16 B 292 CYS GLU PHE SER LEU PRO ALA GLY TRP ASN THR ALA LEU SEQRES 17 B 292 ILE VAL LEU HIS GLY THR LEU LEU VAL ASN GLY ASP ALA SEQRES 18 B 292 ILE ALA ARG GLU ALA GLU MSE VAL LEU LEU ASP PRO THR SEQRES 19 B 292 GLY THR HIS LEU SER ILE GLU ALA ASN ASN ASP THR VAL SEQRES 20 B 292 LEU LEU LEU LEU SER GLY GLU PRO ILE ASP GLU PRO ILE SEQRES 21 B 292 VAL GLY TYR GLY PRO PHE VAL MSE ASN THR GLN ALA GLN SEQRES 22 B 292 ILE ALA GLU ALA ILE ALA ASP PHE ASN GLY GLY ARG PHE SEQRES 23 B 292 GLY ASN MSE ASP VAL ALA MODRES 7TG5 MSE A 1 MET MODIFIED RESIDUE MODRES 7TG5 MSE A 25 MET MODIFIED RESIDUE MODRES 7TG5 MSE A 47 MET MODIFIED RESIDUE MODRES 7TG5 MSE A 97 MET MODIFIED RESIDUE MODRES 7TG5 MSE A 122 MET MODIFIED RESIDUE MODRES 7TG5 MSE A 135 MET MODIFIED RESIDUE MODRES 7TG5 MSE A 225 MET MODIFIED RESIDUE MODRES 7TG5 MSE A 265 MET MODIFIED RESIDUE MODRES 7TG5 MSE B 1 MET MODIFIED RESIDUE MODRES 7TG5 MSE B 25 MET MODIFIED RESIDUE MODRES 7TG5 MSE B 47 MET MODIFIED RESIDUE MODRES 7TG5 MSE B 97 MET MODIFIED RESIDUE MODRES 7TG5 MSE B 122 MET MODIFIED RESIDUE MODRES 7TG5 MSE B 135 MET MODIFIED RESIDUE MODRES 7TG5 MSE B 225 MET MODIFIED RESIDUE MODRES 7TG5 MSE B 265 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 25 8 HET MSE A 47 8 HET MSE A 97 8 HET MSE A 122 8 HET MSE A 135 8 HET MSE A 225 8 HET MSE A 265 8 HET MSE B 1 8 HET MSE B 25 8 HET MSE B 47 8 HET MSE B 97 8 HET MSE B 122 16 HET MSE B 135 8 HET MSE B 225 8 HET MSE B 265 8 HET FE A 301 1 HET CL A 302 1 HET FE B 301 1 HETNAM MSE SELENOMETHIONINE HETNAM FE FE (III) ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 FE 2(FE 3+) FORMUL 4 CL CL 1- FORMUL 6 HOH *327(H2 O) HELIX 1 AA1 SER A 27 GLY A 32 1 6 HELIX 2 AA2 SER A 110 GLY A 117 1 8 HELIX 3 AA3 PRO A 130 LYS A 134 5 5 HELIX 4 AA4 ARG A 144 ILE A 148 5 5 HELIX 5 AA5 PRO A 154 ASP A 156 5 3 HELIX 6 AA6 THR A 267 GLY A 280 1 14 HELIX 7 AA7 TYR B 28 SER B 36 1 9 HELIX 8 AA8 SER B 110 GLY B 117 1 8 HELIX 9 AA9 PRO B 130 LYS B 134 5 5 HELIX 10 AB1 ARG B 144 ILE B 148 5 5 HELIX 11 AB2 PRO B 154 ASP B 156 5 3 HELIX 12 AB3 THR B 267 GLY B 280 1 14 SHEET 1 AA1 7 VAL A 4 TYR A 8 0 SHEET 2 AA1 7 GLU A 224 LEU A 228 -1 O LEU A 227 N GLY A 6 SHEET 3 AA1 7 ASN A 202 HIS A 209 -1 N LEU A 205 O VAL A 226 SHEET 4 AA1 7 THR A 243 GLY A 250 -1 O LEU A 248 N ALA A 204 SHEET 5 AA1 7 LEU A 180 LEU A 187 -1 N ASN A 181 O SER A 249 SHEET 6 AA1 7 GLY A 158 ALA A 164 -1 N ARG A 161 O ASP A 184 SHEET 7 AA1 7 GLN A 150 ASN A 152 -1 N VAL A 151 O LEU A 160 SHEET 1 AA2 7 HIS A 14 VAL A 16 0 SHEET 2 AA2 7 PHE A 20 PHE A 26 -1 O VAL A 22 N HIS A 14 SHEET 3 AA2 7 PHE A 38 PHE A 49 -1 O LEU A 41 N MSE A 25 SHEET 4 AA2 7 GLY A 118 ASN A 128 -1 O TRP A 126 N LEU A 39 SHEET 5 AA2 7 PHE A 66 HIS A 74 -1 N GLU A 67 O VAL A 127 SHEET 6 AA2 7 VAL A 94 THR A 98 -1 O MSE A 97 N THR A 68 SHEET 7 AA2 7 ALA A 142 ILE A 143 -1 O ILE A 143 N VAL A 94 SHEET 1 AA3 4 GLY A 57 HIS A 63 0 SHEET 2 AA3 4 ILE A 103 HIS A 109 -1 O GLU A 107 N VAL A 58 SHEET 3 AA3 4 VAL A 77 ASP A 81 -1 N GLU A 78 O PHE A 108 SHEET 4 AA3 4 GLY A 86 ILE A 89 -1 O ILE A 89 N VAL A 77 SHEET 1 AA4 2 GLU A 166 TYR A 167 0 SHEET 2 AA4 2 ASN A 170 ILE A 171 -1 O ASN A 170 N TYR A 167 SHEET 1 AA5 4 SER A 192 SER A 196 0 SHEET 2 AA5 4 HIS A 234 ALA A 239 -1 O LEU A 235 N PHE A 195 SHEET 3 AA5 4 LEU A 212 VAL A 214 -1 N LEU A 213 O GLU A 238 SHEET 4 AA5 4 ALA A 218 ALA A 220 -1 O ALA A 220 N LEU A 212 SHEET 1 AA6 2 VAL A 258 TYR A 260 0 SHEET 2 AA6 2 PHE A 263 MSE A 265 -1 O PHE A 263 N TYR A 260 SHEET 1 AA7 5 VAL B 4 TYR B 8 0 SHEET 2 AA7 5 GLU B 224 LEU B 228 -1 O LEU B 227 N GLY B 6 SHEET 3 AA7 5 ASN B 202 VAL B 214 -1 N LEU B 205 O VAL B 226 SHEET 4 AA7 5 HIS B 234 GLY B 250 -1 O VAL B 244 N LEU B 208 SHEET 5 AA7 5 SER B 192 SER B 196 -1 N PHE B 195 O LEU B 235 SHEET 1 AA8 6 GLN B 150 ASN B 152 0 SHEET 2 AA8 6 GLY B 158 ALA B 164 -1 O LEU B 160 N VAL B 151 SHEET 3 AA8 6 LEU B 180 LEU B 187 -1 O ASP B 184 N ARG B 161 SHEET 4 AA8 6 HIS B 234 GLY B 250 -1 O SER B 249 N ASN B 181 SHEET 5 AA8 6 ASN B 202 VAL B 214 -1 N LEU B 208 O VAL B 244 SHEET 6 AA8 6 ALA B 218 ALA B 220 -1 O ALA B 220 N LEU B 212 SHEET 1 AA9 7 GLN B 13 VAL B 16 0 SHEET 2 AA9 7 PHE B 20 SER B 27 -1 O PHE B 20 N VAL B 16 SHEET 3 AA9 7 PHE B 38 PHE B 49 -1 O TYR B 43 N ARG B 23 SHEET 4 AA9 7 GLY B 118 ASN B 128 -1 O GLN B 124 N ASP B 42 SHEET 5 AA9 7 PHE B 66 HIS B 74 -1 N ILE B 71 O VAL B 123 SHEET 6 AA9 7 VAL B 94 THR B 98 -1 O MSE B 97 N THR B 68 SHEET 7 AA9 7 GLY B 139 ILE B 143 -1 O ILE B 143 N VAL B 94 SHEET 1 AB1 4 GLY B 57 HIS B 63 0 SHEET 2 AB1 4 ILE B 103 HIS B 109 -1 O GLU B 107 N VAL B 58 SHEET 3 AB1 4 VAL B 77 ASP B 81 -1 N GLU B 78 O PHE B 108 SHEET 4 AB1 4 GLY B 86 ILE B 89 -1 O ILE B 89 N VAL B 77 SHEET 1 AB2 2 GLU B 166 TYR B 167 0 SHEET 2 AB2 2 ASN B 170 ILE B 171 -1 O ASN B 170 N TYR B 167 SHEET 1 AB3 2 VAL B 258 TYR B 260 0 SHEET 2 AB3 2 PHE B 263 MSE B 265 -1 O MSE B 265 N VAL B 258 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C SER A 24 N MSE A 25 1555 1555 1.33 LINK C MSE A 25 N PHE A 26 1555 1555 1.33 LINK C PRO A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N ASP A 48 1555 1555 1.33 LINK C TRP A 96 N MSE A 97 1555 1555 1.33 LINK C MSE A 97 N THR A 98 1555 1555 1.33 LINK C GLU A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N VAL A 123 1555 1555 1.33 LINK C LYS A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N THR A 136 1555 1555 1.33 LINK C GLU A 224 N MSE A 225 1555 1555 1.32 LINK C MSE A 225 N VAL A 226 1555 1555 1.33 LINK C VAL A 264 N MSE A 265 1555 1555 1.33 LINK C MSE A 265 N ASN A 266 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C SER B 24 N MSE B 25 1555 1555 1.33 LINK C MSE B 25 N PHE B 26 1555 1555 1.33 LINK C PRO B 46 N MSE B 47 1555 1555 1.33 LINK C MSE B 47 N ASP B 48 1555 1555 1.33 LINK C TRP B 96 N MSE B 97 1555 1555 1.33 LINK C MSE B 97 N THR B 98 1555 1555 1.33 LINK C GLU B 121 N AMSE B 122 1555 1555 1.33 LINK C GLU B 121 N BMSE B 122 1555 1555 1.33 LINK C AMSE B 122 N VAL B 123 1555 1555 1.33 LINK C BMSE B 122 N VAL B 123 1555 1555 1.33 LINK C LYS B 134 N MSE B 135 1555 1555 1.33 LINK C MSE B 135 N THR B 136 1555 1555 1.33 LINK C GLU B 224 N MSE B 225 1555 1555 1.33 LINK C MSE B 225 N VAL B 226 1555 1555 1.33 LINK C VAL B 264 N MSE B 265 1555 1555 1.33 LINK C MSE B 265 N ASN B 266 1555 1555 1.33 LINK NE2 HIS A 61 FE FE A 301 1555 1555 2.49 LINK NE2 HIS A 105 FE FE A 301 1555 1555 1.93 LINK FE FE A 301 O HOH A 450 1555 1555 2.73 LINK NE2 HIS B 61 FE FE B 301 1555 1555 1.90 LINK NE2 HIS B 63 FE FE B 301 1555 1555 1.95 LINK NE2 HIS B 105 FE FE B 301 1555 1555 2.45 LINK FE FE B 301 O HOH B 445 1555 1555 2.39 LINK FE FE B 301 O HOH B 491 1555 1555 1.91 CISPEP 1 SER A 36 PRO A 37 0 10.71 CISPEP 2 GLY A 45 PRO A 46 0 2.55 CISPEP 3 SER B 36 PRO B 37 0 8.66 CISPEP 4 GLY B 45 PRO B 46 0 1.57 CRYST1 66.050 66.050 121.540 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015140 0.008741 0.000000 0.00000 SCALE2 0.000000 0.017482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008228 0.00000