HEADER IMMUNE SYSTEM/TOXIN 07-JAN-22 7TGI TITLE SINGLE-DOMAIN VHH INTRABODIES NEUTRALIZE RICIN TOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RICIN CHAIN A; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.22; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VHH ANTIBODY; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: VHH ANTIBODY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICINUS COMMUNIS; SOURCE 3 ORGANISM_COMMON: CASTOR BEAN; SOURCE 4 ORGANISM_TAXID: 3988; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 10 ORGANISM_TAXID: 30538; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: 'BL21-GOLD(DE3)PLYSS AG' KEYWDS RICIN TOXIN, VHH ANTIBODY, IMMUNE SYSTEM, IMMUNE SYSTEM-TOXIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RUDOLPH REVDAT 2 18-OCT-23 7TGI 1 REMARK REVDAT 1 12-OCT-22 7TGI 0 JRNL AUTH T.F.CZAJKA,D.J.VANCE,S.DAVIS,M.J.RUDOLPH,N.J.MANTIS JRNL TITL SINGLE-DOMAIN ANTIBODIES NEUTRALIZE RICIN TOXIN JRNL TITL 2 INTRACELLULARLY BY BLOCKING ACCESS TO RIBOSOMAL P-STALK JRNL TITL 3 PROTEINS. JRNL REF J.BIOL.CHEM. V. 298 01742 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35182523 JRNL DOI 10.1016/J.JBC.2022.101742 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 22926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 1089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2030 - 4.2060 0.98 2802 124 0.1536 0.1871 REMARK 3 2 4.2060 - 3.3389 0.98 2737 132 0.1582 0.1968 REMARK 3 3 3.3389 - 2.9169 0.99 2715 145 0.1819 0.2251 REMARK 3 4 2.9169 - 2.6503 0.99 2735 153 0.1874 0.2562 REMARK 3 5 2.6503 - 2.4603 0.99 2729 120 0.2024 0.2558 REMARK 3 6 2.4603 - 2.3153 0.99 2748 145 0.2136 0.3031 REMARK 3 7 2.3153 - 2.1993 0.99 2741 135 0.2265 0.2373 REMARK 3 8 2.1993 - 2.1040 0.96 2630 135 0.2423 0.2938 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3024 REMARK 3 ANGLE : 0.871 4110 REMARK 3 CHIRALITY : 0.056 454 REMARK 3 PLANARITY : 0.005 537 REMARK 3 DIHEDRAL : 2.849 2254 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5128 -8.8940 41.7104 REMARK 3 T TENSOR REMARK 3 T11: 0.2688 T22: 0.4527 REMARK 3 T33: 0.5205 T12: -0.0032 REMARK 3 T13: -0.0566 T23: 0.0693 REMARK 3 L TENSOR REMARK 3 L11: 5.9435 L22: 4.0437 REMARK 3 L33: 7.2942 L12: 0.1778 REMARK 3 L13: -1.7698 L23: -4.4686 REMARK 3 S TENSOR REMARK 3 S11: -0.1315 S12: -0.1717 S13: 0.6140 REMARK 3 S21: -0.0431 S22: -0.5797 S23: -1.1849 REMARK 3 S31: -0.1815 S32: 1.0640 S33: 0.7145 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2636 -13.6471 37.3236 REMARK 3 T TENSOR REMARK 3 T11: 0.3630 T22: 0.2284 REMARK 3 T33: 0.2579 T12: 0.0004 REMARK 3 T13: -0.0265 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 8.7061 L22: 3.4263 REMARK 3 L33: 6.2438 L12: 5.0803 REMARK 3 L13: -0.7941 L23: -2.1406 REMARK 3 S TENSOR REMARK 3 S11: 0.3492 S12: -0.1218 S13: 0.5898 REMARK 3 S21: -0.1130 S22: -0.5513 S23: 0.5201 REMARK 3 S31: 0.6933 S32: 0.1218 S33: 0.1315 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6086 -16.6073 35.2032 REMARK 3 T TENSOR REMARK 3 T11: 0.4312 T22: 0.2969 REMARK 3 T33: 0.4075 T12: 0.0157 REMARK 3 T13: -0.0558 T23: 0.0506 REMARK 3 L TENSOR REMARK 3 L11: 6.1671 L22: 9.5252 REMARK 3 L33: 4.2890 L12: -0.9202 REMARK 3 L13: 1.2487 L23: 3.0606 REMARK 3 S TENSOR REMARK 3 S11: 0.0337 S12: 0.2859 S13: -0.4108 REMARK 3 S21: -0.7280 S22: -0.1503 S23: 1.5518 REMARK 3 S31: 0.3345 S32: 0.0758 S33: -0.1027 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 51 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3574 1.9637 39.3245 REMARK 3 T TENSOR REMARK 3 T11: 0.8173 T22: 0.3558 REMARK 3 T33: 0.7729 T12: -0.0421 REMARK 3 T13: 0.0203 T23: 0.0820 REMARK 3 L TENSOR REMARK 3 L11: 4.6517 L22: 4.8861 REMARK 3 L33: 5.7937 L12: 2.5871 REMARK 3 L13: -3.5567 L23: 1.0904 REMARK 3 S TENSOR REMARK 3 S11: 0.9323 S12: 0.8830 S13: 2.9682 REMARK 3 S21: -0.1358 S22: -1.0074 S23: -0.4747 REMARK 3 S31: -2.3824 S32: 0.1396 S33: -0.4612 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3316 -7.9226 42.1009 REMARK 3 T TENSOR REMARK 3 T11: 0.3714 T22: 0.3404 REMARK 3 T33: 0.3346 T12: 0.0370 REMARK 3 T13: 0.0073 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 7.8620 L22: 4.6045 REMARK 3 L33: 7.0530 L12: 3.0019 REMARK 3 L13: -2.3324 L23: -5.2129 REMARK 3 S TENSOR REMARK 3 S11: 0.3252 S12: 0.1029 S13: 0.6374 REMARK 3 S21: 0.5400 S22: 0.2428 S23: 1.2542 REMARK 3 S31: -0.2273 S32: -0.6958 S33: -0.4449 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9660 -9.2356 47.4339 REMARK 3 T TENSOR REMARK 3 T11: 0.3380 T22: 0.4230 REMARK 3 T33: 0.3414 T12: -0.0225 REMARK 3 T13: -0.0381 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 7.9482 L22: 5.1209 REMARK 3 L33: 6.1362 L12: 0.3674 REMARK 3 L13: -1.7989 L23: 0.8517 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: -0.4677 S13: -0.1204 REMARK 3 S21: 0.3299 S22: 0.2043 S23: -0.6769 REMARK 3 S31: -0.3707 S32: 0.5929 S33: -0.2840 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1048 -18.8600 42.3975 REMARK 3 T TENSOR REMARK 3 T11: 0.3162 T22: 0.3535 REMARK 3 T33: 0.2545 T12: -0.0496 REMARK 3 T13: -0.0168 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 3.8135 L22: 7.9055 REMARK 3 L33: 7.8801 L12: 0.5917 REMARK 3 L13: -1.8252 L23: -1.7502 REMARK 3 S TENSOR REMARK 3 S11: -0.1603 S12: -0.1325 S13: -0.0213 REMARK 3 S21: 0.2170 S22: -0.0171 S23: 0.2347 REMARK 3 S31: 0.6118 S32: -0.6084 S33: 0.1802 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3900 -7.4117 29.5659 REMARK 3 T TENSOR REMARK 3 T11: 0.4109 T22: 0.3182 REMARK 3 T33: 0.4751 T12: 0.0565 REMARK 3 T13: 0.0407 T23: 0.1271 REMARK 3 L TENSOR REMARK 3 L11: 6.6011 L22: 1.0650 REMARK 3 L33: 8.6331 L12: -0.7856 REMARK 3 L13: 1.0165 L23: 2.7199 REMARK 3 S TENSOR REMARK 3 S11: 0.3993 S12: 0.7201 S13: 0.1656 REMARK 3 S21: -1.0037 S22: -0.6989 S23: -0.8907 REMARK 3 S31: -0.1984 S32: 0.6407 S33: 0.2271 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6694 -12.0717 30.1466 REMARK 3 T TENSOR REMARK 3 T11: 0.3733 T22: 0.4187 REMARK 3 T33: 0.3766 T12: 0.0686 REMARK 3 T13: 0.0582 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 5.3622 L22: 2.9089 REMARK 3 L33: 4.4033 L12: -2.5089 REMARK 3 L13: 4.5365 L23: -1.1405 REMARK 3 S TENSOR REMARK 3 S11: 0.3925 S12: 1.4440 S13: 0.1982 REMARK 3 S21: -0.5514 S22: -0.3773 S23: -0.6598 REMARK 3 S31: -0.1929 S32: 0.8775 S33: -0.0309 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3132 -24.6330 43.2893 REMARK 3 T TENSOR REMARK 3 T11: 0.5851 T22: 0.3759 REMARK 3 T33: 0.3654 T12: 0.0392 REMARK 3 T13: 0.0663 T23: 0.1000 REMARK 3 L TENSOR REMARK 3 L11: 2.2983 L22: 2.1877 REMARK 3 L33: 2.1475 L12: 1.6504 REMARK 3 L13: 1.7480 L23: 1.5381 REMARK 3 S TENSOR REMARK 3 S11: -0.2125 S12: -0.9974 S13: -0.8916 REMARK 3 S21: 0.1214 S22: -0.3807 S23: -0.3054 REMARK 3 S31: 0.9545 S32: 0.9929 S33: 0.4066 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2853 12.4781 27.3940 REMARK 3 T TENSOR REMARK 3 T11: 0.3495 T22: 0.2927 REMARK 3 T33: 0.2723 T12: 0.0051 REMARK 3 T13: -0.0722 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 2.8850 L22: 3.1649 REMARK 3 L33: 3.1069 L12: 0.0151 REMARK 3 L13: -1.6951 L23: -0.6944 REMARK 3 S TENSOR REMARK 3 S11: -0.2336 S12: -0.2137 S13: 0.1352 REMARK 3 S21: 0.4748 S22: 0.0509 S23: 0.1732 REMARK 3 S31: -0.2808 S32: -0.0407 S33: 0.1059 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6112 17.7209 14.5860 REMARK 3 T TENSOR REMARK 3 T11: 0.2766 T22: 0.1795 REMARK 3 T33: 0.2530 T12: 0.0263 REMARK 3 T13: -0.0185 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.9898 L22: 3.8991 REMARK 3 L33: 5.1143 L12: -0.6657 REMARK 3 L13: 0.1798 L23: -0.6773 REMARK 3 S TENSOR REMARK 3 S11: -0.2249 S12: 0.0909 S13: -0.0607 REMARK 3 S21: 0.1302 S22: 0.0301 S23: -0.1197 REMARK 3 S31: -0.2782 S32: -0.0770 S33: 0.0778 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3248 12.4079 8.6963 REMARK 3 T TENSOR REMARK 3 T11: 0.2443 T22: 0.3126 REMARK 3 T33: 0.2510 T12: -0.0105 REMARK 3 T13: -0.0254 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 3.2789 L22: 4.5335 REMARK 3 L33: 4.2013 L12: -0.4246 REMARK 3 L13: -0.2858 L23: 0.9652 REMARK 3 S TENSOR REMARK 3 S11: -0.0668 S12: -0.0232 S13: 0.0286 REMARK 3 S21: -0.0820 S22: 0.0767 S23: 0.3238 REMARK 3 S31: -0.2399 S32: -0.1044 S33: 0.0427 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2536 12.1302 7.0203 REMARK 3 T TENSOR REMARK 3 T11: 0.2911 T22: 0.4591 REMARK 3 T33: 0.2594 T12: -0.0208 REMARK 3 T13: 0.0179 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 3.9358 L22: 7.1684 REMARK 3 L33: 8.8418 L12: -1.4888 REMARK 3 L13: 3.0797 L23: -6.1481 REMARK 3 S TENSOR REMARK 3 S11: -0.1743 S12: 0.3329 S13: -0.1791 REMARK 3 S21: -0.3320 S22: -0.0437 S23: -0.5617 REMARK 3 S31: 0.0605 S32: 0.6498 S33: 0.4749 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6959 9.0246 5.5568 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.3219 REMARK 3 T33: 0.3434 T12: 0.0363 REMARK 3 T13: 0.0525 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 6.1330 L22: 4.4209 REMARK 3 L33: 7.3435 L12: -0.2495 REMARK 3 L13: 0.9240 L23: -1.1856 REMARK 3 S TENSOR REMARK 3 S11: 0.1030 S12: 0.5344 S13: 0.1723 REMARK 3 S21: -0.1515 S22: 0.0552 S23: -0.3757 REMARK 3 S31: -0.0698 S32: 0.1821 S33: -0.1167 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8022 1.4204 22.9256 REMARK 3 T TENSOR REMARK 3 T11: 0.3081 T22: 0.2667 REMARK 3 T33: 0.3404 T12: 0.0056 REMARK 3 T13: -0.0121 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 9.4366 L22: 6.4902 REMARK 3 L33: 3.3861 L12: -3.4595 REMARK 3 L13: -2.4819 L23: -0.8386 REMARK 3 S TENSOR REMARK 3 S11: -0.1231 S12: -0.1671 S13: -0.6575 REMARK 3 S21: 0.1988 S22: -0.1381 S23: -0.1348 REMARK 3 S31: 0.1519 S32: 0.3792 S33: 0.3628 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3833 -2.8641 20.4904 REMARK 3 T TENSOR REMARK 3 T11: 0.2993 T22: 0.2809 REMARK 3 T33: 0.3152 T12: 0.0284 REMARK 3 T13: 0.0059 T23: 0.0631 REMARK 3 L TENSOR REMARK 3 L11: 2.5466 L22: 2.4610 REMARK 3 L33: 3.6988 L12: 0.1261 REMARK 3 L13: -0.6832 L23: 0.2746 REMARK 3 S TENSOR REMARK 3 S11: -0.2828 S12: -0.0014 S13: -0.5551 REMARK 3 S21: -0.3411 S22: -0.0356 S23: 0.0938 REMARK 3 S31: 0.2841 S32: 0.2374 S33: 0.3559 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 220 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1046 -9.8786 28.4909 REMARK 3 T TENSOR REMARK 3 T11: 0.3694 T22: 0.4753 REMARK 3 T33: 0.3771 T12: -0.0717 REMARK 3 T13: -0.0919 T23: 0.0749 REMARK 3 L TENSOR REMARK 3 L11: 7.3693 L22: 6.9240 REMARK 3 L33: 3.8860 L12: -4.0651 REMARK 3 L13: -4.5651 L23: 4.3171 REMARK 3 S TENSOR REMARK 3 S11: 0.0582 S12: -0.2119 S13: -0.7470 REMARK 3 S21: 0.0343 S22: -0.2119 S23: 0.4358 REMARK 3 S31: 0.5548 S32: -0.6737 S33: 0.1287 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4826 -3.1949 30.4056 REMARK 3 T TENSOR REMARK 3 T11: 0.2530 T22: 0.3457 REMARK 3 T33: 0.3216 T12: -0.0355 REMARK 3 T13: 0.0950 T23: 0.0625 REMARK 3 L TENSOR REMARK 3 L11: 5.8469 L22: 7.6085 REMARK 3 L33: 2.9105 L12: -0.3565 REMARK 3 L13: 1.0412 L23: -1.5065 REMARK 3 S TENSOR REMARK 3 S11: -0.3530 S12: -0.5052 S13: -0.5331 REMARK 3 S21: 0.4767 S22: 0.5977 S23: 0.7447 REMARK 3 S31: 0.1361 S32: -0.3906 S33: -0.1974 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7372 -25.6408 48.3052 REMARK 3 T TENSOR REMARK 3 T11: 0.8065 T22: 0.5794 REMARK 3 T33: 0.3535 T12: -0.0832 REMARK 3 T13: -0.0930 T23: 0.1106 REMARK 3 L TENSOR REMARK 3 L11: 2.5772 L22: 3.4573 REMARK 3 L33: 5.3117 L12: -1.7016 REMARK 3 L13: -3.4715 L23: 2.4121 REMARK 3 S TENSOR REMARK 3 S11: -0.0710 S12: -1.1197 S13: -0.2061 REMARK 3 S21: 1.1219 S22: 0.1687 S23: 0.1128 REMARK 3 S31: 0.6034 S32: 0.9085 S33: 0.1995 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TGI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262248. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22929 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1RTC, 4LGR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MAGNESIUM CHLORIDE, 20% PEG REMARK 280 3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 22.06450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.20350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 22.06450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.20350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 PHE A 2 REMARK 465 PRO A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 ALA A 260 REMARK 465 PRO A 261 REMARK 465 PRO A 262 REMARK 465 PRO A 263 REMARK 465 SER A 264 REMARK 465 SER A 265 REMARK 465 GLN A 266 REMARK 465 PHE A 267 REMARK 465 GLN B 1 REMARK 465 VAL B 2 REMARK 465 GLN B 3 REMARK 465 GLY B 8 REMARK 465 GLY B 9 REMARK 465 SER B 123 REMARK 465 GLU B 124 REMARK 465 PRO B 125 REMARK 465 LYS B 126 REMARK 465 THR B 127 REMARK 465 PRO B 128 REMARK 465 LYS B 129 REMARK 465 PRO B 130 REMARK 465 GLN B 131 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 45 O HOH B 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 175 -62.20 -121.24 REMARK 500 ARG A 258 -50.16 -126.70 REMARK 500 SER B 48 148.05 -173.82 REMARK 500 SER B 53 54.02 -90.22 REMARK 500 ASP B 54 -170.66 -176.77 REMARK 500 ALA B 91 166.15 178.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7TGF RELATED DB: PDB DBREF 7TGI A 1 267 UNP P02879 RICI_RICCO 36 302 DBREF 7TGI B 1 131 PDB 7TGI 7TGI 1 131 SEQRES 1 A 267 ILE PHE PRO LYS GLN TYR PRO ILE ILE ASN PHE THR THR SEQRES 2 A 267 ALA GLY ALA THR VAL GLN SER TYR THR ASN PHE ILE ARG SEQRES 3 A 267 ALA VAL ARG GLY ARG LEU THR THR GLY ALA ASP VAL ARG SEQRES 4 A 267 HIS GLU ILE PRO VAL LEU PRO ASN ARG VAL GLY LEU PRO SEQRES 5 A 267 ILE ASN GLN ARG PHE ILE LEU VAL GLU LEU SER ASN HIS SEQRES 6 A 267 ALA GLU LEU SER VAL THR LEU ALA LEU ASP VAL THR ASN SEQRES 7 A 267 ALA TYR VAL VAL GLY TYR ARG ALA GLY ASN SER ALA TYR SEQRES 8 A 267 PHE PHE HIS PRO ASP ASN GLN GLU ASP ALA GLU ALA ILE SEQRES 9 A 267 THR HIS LEU PHE THR ASP VAL GLN ASN ARG TYR THR PHE SEQRES 10 A 267 ALA PHE GLY GLY ASN TYR ASP ARG LEU GLU GLN LEU ALA SEQRES 11 A 267 GLY ASN LEU ARG GLU ASN ILE GLU LEU GLY ASN GLY PRO SEQRES 12 A 267 LEU GLU GLU ALA ILE SER ALA LEU TYR TYR TYR SER THR SEQRES 13 A 267 GLY GLY THR GLN LEU PRO THR LEU ALA ARG SER PHE ILE SEQRES 14 A 267 ILE CYS ILE GLN MET ILE SER GLU ALA ALA ARG PHE GLN SEQRES 15 A 267 TYR ILE GLU GLY GLU MET ARG THR ARG ILE ARG TYR ASN SEQRES 16 A 267 ARG ARG SER ALA PRO ASP PRO SER VAL ILE THR LEU GLU SEQRES 17 A 267 ASN SER TRP GLY ARG LEU SER THR ALA ILE GLN GLU SER SEQRES 18 A 267 ASN GLN GLY ALA PHE ALA SER PRO ILE GLN LEU GLN ARG SEQRES 19 A 267 ARG ASN GLY SER LYS PHE SER VAL TYR ASP VAL SER ILE SEQRES 20 A 267 LEU ILE PRO ILE ILE ALA LEU MET VAL TYR ARG CYS ALA SEQRES 21 A 267 PRO PRO PRO SER SER GLN PHE SEQRES 1 B 131 GLN VAL GLN LEU VAL GLU THR GLY GLY LEU VAL GLN PRO SEQRES 2 B 131 GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY LEU SEQRES 3 B 131 THR LEU ASP TYR TYR ASN ILE GLY TRP PHE ARG GLN ALA SEQRES 4 B 131 PRO GLY LYS GLU ARG GLU TRP VAL SER SER ILE SER SER SEQRES 5 B 131 SER ASP GLY ARG LYS TYR TYR VAL ASN SER VAL LYS GLY SEQRES 6 B 131 ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR VAL SEQRES 7 B 131 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 B 131 VAL TYR TYR CYS ALA ALA ASP ARG ASP ARG LEU PRO SER SEQRES 9 B 131 ALA ILE THR TYR GLU TYR ASN TYR TRP GLY GLN GLY THR SEQRES 10 B 131 GLN VAL THR VAL SER SER GLU PRO LYS THR PRO LYS PRO SEQRES 11 B 131 GLN HET CL A 301 1 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET EDO B 201 4 HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL 5(CL 1-) FORMUL 8 EDO C2 H6 O2 FORMUL 9 HOH *120(H2 O) HELIX 1 AA1 THR A 17 THR A 33 1 17 HELIX 2 AA2 PRO A 52 GLN A 55 5 4 HELIX 3 AA3 ASN A 97 THR A 105 1 9 HELIX 4 AA4 ASN A 122 GLY A 131 1 10 HELIX 5 AA5 LEU A 133 ILE A 137 5 5 HELIX 6 AA6 GLY A 140 TYR A 153 1 14 HELIX 7 AA7 GLN A 160 ILE A 175 1 16 HELIX 8 AA8 ILE A 175 PHE A 181 1 7 HELIX 9 AA9 PHE A 181 TYR A 194 1 14 HELIX 10 AB1 ASP A 201 SER A 210 1 10 HELIX 11 AB2 SER A 210 GLU A 220 1 11 HELIX 12 AB3 SER A 246 ILE A 249 5 4 HELIX 13 AB4 THR B 27 TYR B 31 5 5 HELIX 14 AB5 ASN B 61 LYS B 64 5 4 HELIX 15 AB6 LYS B 86 THR B 90 5 5 SHEET 1 AA1 6 ILE A 8 THR A 12 0 SHEET 2 AA1 6 PHE A 57 SER A 63 1 O GLU A 61 N ILE A 9 SHEET 3 AA1 6 SER A 69 ASP A 75 -1 O LEU A 74 N ILE A 58 SHEET 4 AA1 6 VAL A 81 ALA A 86 -1 O VAL A 82 N ALA A 73 SHEET 5 AA1 6 SER A 89 PHE A 92 -1 O TYR A 91 N TYR A 84 SHEET 6 AA1 6 ASN A 113 THR A 116 1 O TYR A 115 N PHE A 92 SHEET 1 AA2 2 ASP A 37 ARG A 39 0 SHEET 2 AA2 2 ILE A 42 VAL A 44 -1 O VAL A 44 N ASP A 37 SHEET 1 AA3 2 ALA A 225 GLN A 233 0 SHEET 2 AA3 2 LYS A 239 ASP A 244 -1 O PHE A 240 N LEU A 232 SHEET 1 AA4 3 LEU B 17 CYS B 21 0 SHEET 2 AA4 3 THR B 77 MET B 82 -1 O MET B 82 N LEU B 17 SHEET 3 AA4 3 PHE B 67 ASP B 72 -1 N SER B 70 O TYR B 79 SHEET 1 AA5 5 LYS B 57 TYR B 59 0 SHEET 2 AA5 5 ARG B 44 ILE B 50 -1 N SER B 49 O TYR B 58 SHEET 3 AA5 5 ASN B 32 GLN B 38 -1 N ARG B 37 O GLU B 45 SHEET 4 AA5 5 ALA B 91 ASP B 98 -1 O TYR B 94 N PHE B 36 SHEET 5 AA5 5 TYR B 112 TRP B 113 -1 O TYR B 112 N ALA B 97 SHEET 1 AA6 5 LYS B 57 TYR B 59 0 SHEET 2 AA6 5 ARG B 44 ILE B 50 -1 N SER B 49 O TYR B 58 SHEET 3 AA6 5 ASN B 32 GLN B 38 -1 N ARG B 37 O GLU B 45 SHEET 4 AA6 5 ALA B 91 ASP B 98 -1 O TYR B 94 N PHE B 36 SHEET 5 AA6 5 THR B 117 VAL B 119 -1 O THR B 117 N TYR B 93 CRYST1 44.129 84.407 109.945 90.00 97.06 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022661 0.000000 0.002805 0.00000 SCALE2 0.000000 0.011847 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009165 0.00000