HEADER ISOMERASE 09-JAN-22 7TGS TITLE STRUCTURE OF CYCLOPHILIN D PEPTIDYL-PROLYL ISOMERASE DOMAIN BOUND TO TITLE 2 MACROCYCLIC INHIBITOR JOMBT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE F, MITOCHONDRIAL; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: PPIASE F,CYCLOPHILIN D,CYP-D,CYPD,CYCLOPHILIN F, COMPND 5 MITOCHONDRIAL CYCLOPHILIN,CYP-M,ROTAMASE F; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIF, CYP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PEPTIDYL-PROLYL ISOMERASE, OXIDATIVE STRESS, NECROSIS, MITOCHONDRIAL KEYWDS 2 PERMEABILITY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.RANGWALA,M.A.SEELIGER,A.A.PETERSON,D.R.LIU REVDAT 4 18-OCT-23 7TGS 1 REMARK REVDAT 3 02-NOV-22 7TGS 1 JRNL REVDAT 2 12-OCT-22 7TGS 1 JRNL REVDAT 1 24-AUG-22 7TGS 0 JRNL AUTH A.A.PETERSON,A.M.RANGWALA,M.K.THAKUR,P.S.WARD,C.HUNG, JRNL AUTH 2 I.R.OUTHWAITE,A.I.CHAN,D.L.USANOV,V.K.MOOTHA,M.A.SEELIGER, JRNL AUTH 3 D.R.LIU JRNL TITL DISCOVERY AND MOLECULAR BASIS OF SUBTYPE-SELECTIVE JRNL TITL 2 CYCLOPHILIN INHIBITORS. JRNL REF NAT.CHEM.BIOL. V. 18 1184 2022 JRNL REFN ESSN 1552-4469 JRNL PMID 36163383 JRNL DOI 10.1038/S41589-022-01116-1 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 17266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4800 - 3.1700 1.00 3044 165 0.1938 0.1970 REMARK 3 2 3.1700 - 2.5200 1.00 2918 149 0.1506 0.1623 REMARK 3 3 2.5200 - 2.2000 0.86 2484 128 0.1477 0.1680 REMARK 3 4 2.2000 - 2.0000 0.99 2816 156 0.1412 0.1666 REMARK 3 5 2.0000 - 1.8600 0.82 2346 126 0.1668 0.2256 REMARK 3 6 1.8500 - 1.7500 0.98 2803 131 0.1817 0.2078 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.114 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.662 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1328 REMARK 3 ANGLE : 0.986 1789 REMARK 3 CHIRALITY : 0.054 190 REMARK 3 PLANARITY : 0.005 233 REMARK 3 DIHEDRAL : 22.852 191 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 2 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.7094 -0.3676 93.3726 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.1325 REMARK 3 T33: 0.1299 T12: 0.0144 REMARK 3 T13: 0.0319 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.3361 L22: 3.3589 REMARK 3 L33: 2.7945 L12: 1.4270 REMARK 3 L13: 0.0406 L23: -0.1523 REMARK 3 S TENSOR REMARK 3 S11: 0.1234 S12: -0.2922 S13: -0.3734 REMARK 3 S21: 0.0472 S22: 0.0294 S23: -0.0225 REMARK 3 S31: 0.3166 S32: -0.2705 S33: -0.1554 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 30 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.4791 9.1887 99.8978 REMARK 3 T TENSOR REMARK 3 T11: 0.1789 T22: 0.1859 REMARK 3 T33: 0.1525 T12: 0.0366 REMARK 3 T13: 0.0201 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.4274 L22: 2.6031 REMARK 3 L33: 4.6452 L12: -1.2732 REMARK 3 L13: -1.4905 L23: -1.8805 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: -0.2263 S13: 0.0702 REMARK 3 S21: 0.2301 S22: 0.0852 S23: 0.1941 REMARK 3 S31: -0.0419 S32: -0.0349 S33: -0.0931 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 42 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.8971 8.2827 87.0073 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1439 REMARK 3 T33: 0.1955 T12: 0.0335 REMARK 3 T13: -0.0003 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.3775 L22: 1.2851 REMARK 3 L33: 7.9898 L12: -0.0138 REMARK 3 L13: -2.2237 L23: 1.5103 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: 0.0111 S13: 0.0743 REMARK 3 S21: -0.0389 S22: 0.0457 S23: 0.0168 REMARK 3 S31: 0.1024 S32: -0.1468 S33: -0.0679 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 65 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.5648 12.1052 88.7591 REMARK 3 T TENSOR REMARK 3 T11: 0.1543 T22: 0.1503 REMARK 3 T33: 0.1712 T12: 0.0041 REMARK 3 T13: 0.0134 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.2904 L22: 0.8171 REMARK 3 L33: 2.4263 L12: 0.4758 REMARK 3 L13: 0.4405 L23: 0.1724 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: -0.0434 S13: 0.0468 REMARK 3 S21: -0.0326 S22: 0.0208 S23: -0.0483 REMARK 3 S31: -0.0947 S32: 0.0473 S33: 0.0086 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 123 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.8826 4.2328 90.1042 REMARK 3 T TENSOR REMARK 3 T11: 0.0966 T22: 0.1448 REMARK 3 T33: 0.1115 T12: 0.0613 REMARK 3 T13: 0.0279 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 5.3534 L22: 7.6933 REMARK 3 L33: 2.9789 L12: 2.6954 REMARK 3 L13: 2.2025 L23: 2.6932 REMARK 3 S TENSOR REMARK 3 S11: 0.1812 S12: -0.0920 S13: -0.1208 REMARK 3 S21: 0.5012 S22: -0.1741 S23: -0.0839 REMARK 3 S31: 0.1606 S32: 0.0543 S33: 0.0703 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 136 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.2460 -3.3958 80.6395 REMARK 3 T TENSOR REMARK 3 T11: 0.2485 T22: 0.1727 REMARK 3 T33: 0.1925 T12: -0.0090 REMARK 3 T13: 0.0222 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 8.1445 L22: 9.7123 REMARK 3 L33: 3.8599 L12: -3.7660 REMARK 3 L13: 3.8765 L23: -5.6926 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: 0.0954 S13: -0.2752 REMARK 3 S21: -0.2522 S22: 0.0743 S23: 0.1385 REMARK 3 S31: 0.8538 S32: -0.1340 S33: -0.0568 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 146 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9426 6.6088 73.8613 REMARK 3 T TENSOR REMARK 3 T11: 0.1506 T22: 0.2125 REMARK 3 T33: 0.1626 T12: 0.0181 REMARK 3 T13: -0.0209 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.8580 L22: 2.3395 REMARK 3 L33: 8.3256 L12: 1.8673 REMARK 3 L13: -1.5566 L23: -3.0590 REMARK 3 S TENSOR REMARK 3 S11: -0.0711 S12: 0.0694 S13: -0.0948 REMARK 3 S21: -0.1850 S22: 0.2233 S23: -0.1779 REMARK 3 S31: 0.0359 S32: -0.4746 S33: -0.1347 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 156 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.1717 1.4025 94.7641 REMARK 3 T TENSOR REMARK 3 T11: 0.1788 T22: 0.1826 REMARK 3 T33: 0.1987 T12: -0.0098 REMARK 3 T13: 0.0390 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 4.8763 L22: 2.7885 REMARK 3 L33: 4.4153 L12: -2.0968 REMARK 3 L13: 4.3849 L23: -2.8802 REMARK 3 S TENSOR REMARK 3 S11: -0.1029 S12: -0.3935 S13: -0.0030 REMARK 3 S21: 0.1578 S22: 0.1932 S23: 0.2071 REMARK 3 S31: 0.0017 S32: -0.5348 S33: -0.0555 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TGS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR; REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17266 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 46.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 1.19500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BIT REMARK 200 REMARK 200 REMARK: BLADED AND TABULAR MORPHOLOGY, RANGING FROM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350 0.5 M KH2PO4 1:3 RATIO OF REMARK 280 PROTEIN TO INHIBITOR 1 UL OF PROTEIN:INHIBITOR COMPLEX WAS MIXED REMARK 280 WITH 1 UL OF MOTHER LIQUOR, PH 7.3, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.25250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.00500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.93950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.00500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.25250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.93950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS X 148 O HOH X 301 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 356 O HOH X 390 4557 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE X 60 -82.13 -146.47 REMARK 500 THR X 119 57.83 -103.32 REMARK 500 REMARK 500 REMARK: NULL DBREF 7TGS X 2 165 UNP P30405 PPIF_HUMAN 44 207 SEQADV 7TGS ILE X 133 UNP P30405 LYS 175 ENGINEERED MUTATION SEQRES 1 X 164 GLY ASN PRO LEU VAL TYR LEU ASP VAL ASP ALA ASN GLY SEQRES 2 X 164 LYS PRO LEU GLY ARG VAL VAL LEU GLU LEU LYS ALA ASP SEQRES 3 X 164 VAL VAL PRO LYS THR ALA GLU ASN PHE ARG ALA LEU CYS SEQRES 4 X 164 THR GLY GLU LYS GLY PHE GLY TYR LYS GLY SER THR PHE SEQRES 5 X 164 HIS ARG VAL ILE PRO SER PHE MET CYS GLN ALA GLY ASP SEQRES 6 X 164 PHE THR ASN HIS ASN GLY THR GLY GLY LYS SER ILE TYR SEQRES 7 X 164 GLY SER ARG PHE PRO ASP GLU ASN PHE THR LEU LYS HIS SEQRES 8 X 164 VAL GLY PRO GLY VAL LEU SER MET ALA ASN ALA GLY PRO SEQRES 9 X 164 ASN THR ASN GLY SER GLN PHE PHE ILE CYS THR ILE LYS SEQRES 10 X 164 THR ASP TRP LEU ASP GLY LYS HIS VAL VAL PHE GLY HIS SEQRES 11 X 164 VAL ILE GLU GLY MET ASP VAL VAL LYS LYS ILE GLU SER SEQRES 12 X 164 PHE GLY SER LYS SER GLY ARG THR SER LYS LYS ILE VAL SEQRES 13 X 164 ILE THR ASP CYS GLY GLN LEU SER HET I3Q X 201 94 HETNAM I3Q (4S,7R,11S,13E,19S)-N-[2-(2-AMINOETHOXY)ETHYL]-4- HETNAM 2 I3Q [(FURAN-2-YL)METHYL]-3,6,12,15,21-PENTAOXO-1,3,4,5,6, HETNAM 3 I3Q 7,8,9,10,12,15,16,17,18,19,20,21,22-OCTADECAHYDRO-2H- HETNAM 4 I3Q 7,11-METHANO-2,5,11,16,20- HETNAM 5 I3Q BENZOPENTAAZACYCLOTETRACOSINE-19-CARBOXAMIDE HETSYN I3Q MACROCYCLIC INHIBITOR JOMBT FORMUL 2 I3Q C34 H45 N7 O8 FORMUL 3 HOH *90(H2 O) HELIX 1 AA1 VAL X 29 GLY X 42 1 14 HELIX 2 AA2 THR X 119 ASP X 123 5 5 HELIX 3 AA3 GLY X 135 SER X 144 1 10 SHEET 1 AA1 8 ARG X 55 ILE X 57 0 SHEET 2 AA1 8 MET X 61 ALA X 64 -1 O GLN X 63 N ARG X 55 SHEET 3 AA1 8 PHE X 112 CYS X 115 -1 O PHE X 112 N ALA X 64 SHEET 4 AA1 8 VAL X 97 MET X 100 -1 N SER X 99 O PHE X 113 SHEET 5 AA1 8 VAL X 128 GLU X 134 -1 O GLY X 130 N LEU X 98 SHEET 6 AA1 8 LYS X 15 LEU X 24 -1 N VAL X 21 O ILE X 133 SHEET 7 AA1 8 LEU X 5 ALA X 12 -1 N VAL X 10 O LEU X 17 SHEET 8 AA1 8 ILE X 156 GLN X 163 -1 O ASP X 160 N ASP X 9 CRYST1 38.505 57.879 78.010 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025971 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012819 0.00000