HEADER ISOMERASE 10-JAN-22 7TH1 TITLE STRUCTURE OF CYCLOPHILIN D PEPTIDYL-PROLYL ISOMERASE DOMAIN BOUND TO TITLE 2 MACROCYCLIC INHIBITOR B3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE F, MITOCHONDRIAL; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: PPIASE F,CYCLOPHILIN D,CYP-D,CYPD,CYCLOPHILIN F, COMPND 5 MITOCHONDRIAL CYCLOPHILIN,CYP-M,ROTAMASE F; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIF, CYP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS OXIDATIVE STRESS, NECROSIS, MITOCHONDRIAL PERMEABILITY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.RANGWALA,M.K.THAKUR,M.A.SEELIGER,A.A.PETERSON,D.R.LIU REVDAT 4 18-OCT-23 7TH1 1 REMARK REVDAT 3 02-NOV-22 7TH1 1 JRNL REVDAT 2 12-OCT-22 7TH1 1 JRNL REVDAT 1 24-AUG-22 7TH1 0 JRNL AUTH A.A.PETERSON,A.M.RANGWALA,M.K.THAKUR,P.S.WARD,C.HUNG, JRNL AUTH 2 I.R.OUTHWAITE,A.I.CHAN,D.L.USANOV,V.K.MOOTHA,M.A.SEELIGER, JRNL AUTH 3 D.R.LIU JRNL TITL DISCOVERY AND MOLECULAR BASIS OF SUBTYPE-SELECTIVE JRNL TITL 2 CYCLOPHILIN INHIBITORS. JRNL REF NAT.CHEM.BIOL. V. 18 1184 2022 JRNL REFN ESSN 1552-4469 JRNL PMID 36163383 JRNL DOI 10.1038/S41589-022-01116-1 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 25403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6800 - 3.1700 0.99 2836 137 0.1590 0.1789 REMARK 3 2 3.1700 - 2.5100 1.00 2724 135 0.1604 0.1881 REMARK 3 3 2.5100 - 2.2000 0.99 2659 165 0.1688 0.1638 REMARK 3 4 2.2000 - 1.9900 0.99 2656 149 0.1631 0.1783 REMARK 3 5 1.9900 - 1.8500 1.00 2629 161 0.1706 0.2071 REMARK 3 6 1.8500 - 1.7400 1.00 2657 135 0.1876 0.2229 REMARK 3 7 1.7400 - 1.6600 1.00 2653 129 0.1911 0.2202 REMARK 3 8 1.6600 - 1.5800 1.00 2653 132 0.1947 0.2018 REMARK 3 9 1.5800 - 1.5200 1.00 2661 132 0.2103 0.2591 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.131 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.838 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1366 REMARK 3 ANGLE : 1.299 1844 REMARK 3 CHIRALITY : 0.064 194 REMARK 3 PLANARITY : 0.007 241 REMARK 3 DIHEDRAL : 14.145 194 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7356 59.4709 76.5361 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.1638 REMARK 3 T33: 0.0962 T12: 0.0067 REMARK 3 T13: -0.0028 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 2.0872 L22: 6.8471 REMARK 3 L33: 2.4343 L12: 1.0054 REMARK 3 L13: 0.1804 L23: -0.1706 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: -0.0961 S13: -0.0611 REMARK 3 S21: 0.2848 S22: 0.0604 S23: 0.1695 REMARK 3 S31: 0.0881 S32: -0.1019 S33: -0.0300 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 15 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0008 65.1806 72.6687 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.1172 REMARK 3 T33: 0.0844 T12: 0.0023 REMARK 3 T13: -0.0018 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.6530 L22: 2.3243 REMARK 3 L33: 1.9127 L12: -0.7568 REMARK 3 L13: 0.4674 L23: -1.1095 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: -0.0437 S13: 0.0583 REMARK 3 S21: 0.0920 S22: 0.0118 S23: 0.0061 REMARK 3 S31: 0.0634 S32: -0.0346 S33: -0.0197 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 42 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8320 56.2157 65.6400 REMARK 3 T TENSOR REMARK 3 T11: 0.1240 T22: 0.1144 REMARK 3 T33: 0.1207 T12: -0.0139 REMARK 3 T13: -0.0130 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.8617 L22: 1.4704 REMARK 3 L33: 1.0062 L12: -0.5789 REMARK 3 L13: -0.5278 L23: 0.1053 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: 0.0222 S13: 0.0881 REMARK 3 S21: 0.0141 S22: 0.0299 S23: 0.0379 REMARK 3 S31: 0.1077 S32: -0.0224 S33: -0.0215 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 65 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7733 59.2983 59.4531 REMARK 3 T TENSOR REMARK 3 T11: 0.1581 T22: 0.1989 REMARK 3 T33: 0.1884 T12: -0.0268 REMARK 3 T13: 0.0071 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 1.2857 L22: 1.5986 REMARK 3 L33: 1.2491 L12: -0.8876 REMARK 3 L13: -0.7856 L23: 1.3234 REMARK 3 S TENSOR REMARK 3 S11: -0.1237 S12: 0.2041 S13: -0.1329 REMARK 3 S21: 0.0164 S22: -0.0634 S23: 0.2551 REMARK 3 S31: 0.1268 S32: -0.2168 S33: 0.1864 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 85 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6805 66.1925 61.6969 REMARK 3 T TENSOR REMARK 3 T11: 0.1091 T22: 0.1387 REMARK 3 T33: 0.1272 T12: 0.0025 REMARK 3 T13: 0.0119 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.7859 L22: 1.7689 REMARK 3 L33: 1.1730 L12: -0.1316 REMARK 3 L13: -0.0205 L23: -0.2954 REMARK 3 S TENSOR REMARK 3 S11: 0.0271 S12: 0.1528 S13: 0.0754 REMARK 3 S21: -0.0898 S22: -0.0349 S23: -0.1843 REMARK 3 S31: 0.0287 S32: 0.0344 S33: 0.0083 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 123 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4005 66.5962 67.2964 REMARK 3 T TENSOR REMARK 3 T11: 0.0751 T22: 0.1073 REMARK 3 T33: 0.1313 T12: 0.0157 REMARK 3 T13: 0.0005 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 2.3239 L22: 3.6510 REMARK 3 L33: 2.2083 L12: -0.2187 REMARK 3 L13: 0.9454 L23: -1.0676 REMARK 3 S TENSOR REMARK 3 S11: -0.1220 S12: -0.0600 S13: 0.0564 REMARK 3 S21: 0.1225 S22: 0.0464 S23: -0.1739 REMARK 3 S31: -0.0888 S32: 0.0666 S33: 0.0882 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 136 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7511 51.6410 72.2920 REMARK 3 T TENSOR REMARK 3 T11: 0.1841 T22: 0.1345 REMARK 3 T33: 0.1492 T12: 0.0209 REMARK 3 T13: -0.0308 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 4.6872 L22: 8.2764 REMARK 3 L33: 7.0335 L12: -1.2866 REMARK 3 L13: -1.1270 L23: 3.8792 REMARK 3 S TENSOR REMARK 3 S11: -0.1713 S12: -0.3660 S13: -0.0821 REMARK 3 S21: 0.4187 S22: 0.2589 S23: -0.2790 REMARK 3 S31: 0.3000 S32: 0.1687 S33: -0.1062 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 146 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2334 45.2772 61.9387 REMARK 3 T TENSOR REMARK 3 T11: 0.2753 T22: 0.2053 REMARK 3 T33: 0.2509 T12: 0.0068 REMARK 3 T13: -0.0121 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 4.6424 L22: 3.6618 REMARK 3 L33: 3.2891 L12: 3.8829 REMARK 3 L13: -3.8363 L23: -3.4262 REMARK 3 S TENSOR REMARK 3 S11: -0.3334 S12: 0.3614 S13: -0.6492 REMARK 3 S21: -0.1939 S22: 0.0665 S23: -0.0162 REMARK 3 S31: 0.6624 S32: -0.2057 S33: 0.1872 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 156 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2850 57.2251 76.3448 REMARK 3 T TENSOR REMARK 3 T11: 0.1569 T22: 0.1741 REMARK 3 T33: 0.1182 T12: -0.0134 REMARK 3 T13: 0.0067 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 2.8569 L22: 7.2291 REMARK 3 L33: 2.7966 L12: -1.0215 REMARK 3 L13: -0.4080 L23: 2.1787 REMARK 3 S TENSOR REMARK 3 S11: -0.1154 S12: -0.2287 S13: -0.0249 REMARK 3 S21: 0.5137 S22: -0.0219 S23: 0.4183 REMARK 3 S31: 0.2728 S32: -0.2202 S33: 0.1624 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TH1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262283. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR; REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, AUTOPROC REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25507 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 44.684 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.16500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : 1.60700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BIT REMARK 200 REMARK 200 REMARK: BLADED, TABULAR, ROUGHLY 0.3-0.5 MM IN LENGTH REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 3350 0.5 M KH2PO4 PROTEIN AND REMARK 280 INHIBITOR WERE MIXED IN RATIO 1:3 1 UL OF PROTEIN:INHIBITOR REMARK 280 COMPLEX WAS MIXED WITH 1 UL MOTHER LIQUOR, PH 7.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.13950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.29600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.13250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.29600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.13950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.13250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH X 386 O HOH X 463 2.09 REMARK 500 O HOH X 447 O HOH X 459 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 307 O HOH X 431 4567 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE X 60 -82.95 -140.10 REMARK 500 ASN X 71 12.69 -165.58 REMARK 500 THR X 119 60.55 -105.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH X 491 DISTANCE = 5.99 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7TGS RELATED DB: PDB REMARK 900 7TGS CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TGT RELATED DB: PDB REMARK 900 7TGT CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TGU RELATED DB: PDB REMARK 900 7TGU CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TGV RELATED DB: PDB REMARK 900 7TGV CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. DBREF 7TH1 X 3 165 UNP P30405 PPIF_HUMAN 45 207 SEQADV 7TH1 ASN X 1 UNP P30405 EXPRESSION TAG SEQADV 7TH1 ALA X 2 UNP P30405 EXPRESSION TAG SEQADV 7TH1 ILE X 133 UNP P30405 LYS 175 ENGINEERED MUTATION SEQRES 1 X 165 ASN ALA ASN PRO LEU VAL TYR LEU ASP VAL ASP ALA ASN SEQRES 2 X 165 GLY LYS PRO LEU GLY ARG VAL VAL LEU GLU LEU LYS ALA SEQRES 3 X 165 ASP VAL VAL PRO LYS THR ALA GLU ASN PHE ARG ALA LEU SEQRES 4 X 165 CYS THR GLY GLU LYS GLY PHE GLY TYR LYS GLY SER THR SEQRES 5 X 165 PHE HIS ARG VAL ILE PRO SER PHE MET CYS GLN ALA GLY SEQRES 6 X 165 ASP PHE THR ASN HIS ASN GLY THR GLY GLY LYS SER ILE SEQRES 7 X 165 TYR GLY SER ARG PHE PRO ASP GLU ASN PHE THR LEU LYS SEQRES 8 X 165 HIS VAL GLY PRO GLY VAL LEU SER MET ALA ASN ALA GLY SEQRES 9 X 165 PRO ASN THR ASN GLY SER GLN PHE PHE ILE CYS THR ILE SEQRES 10 X 165 LYS THR ASP TRP LEU ASP GLY LYS HIS VAL VAL PHE GLY SEQRES 11 X 165 HIS VAL ILE GLU GLY MET ASP VAL VAL LYS LYS ILE GLU SEQRES 12 X 165 SER PHE GLY SER LYS SER GLY ARG THR SER LYS LYS ILE SEQRES 13 X 165 VAL ILE THR ASP CYS GLY GLN LEU SER HET I5J X 201 113 HETNAM I5J (4S,7S,11R,13E,19S)-N-[2-(2-AMINOETHOXY)ETHYL]-7- HETNAM 2 I5J BENZYL-4-[(3-METHYLPHENYL)METHYL]-3,6,12,15,21- HETNAM 3 I5J PENTAOXO-1,3,4,5,6,7,8,9,10,12,15,16,17,18,19,20,21, HETNAM 4 I5J 22-OCTADECAHYDRO-2H-7,11-METHANO-2,5,11,16,20- HETNAM 5 I5J BENZOPENTAAZACYCLOTETRACOSINE-19-CARBOXAMIDE FORMUL 2 I5J C44 H55 N7 O7 FORMUL 3 HOH *191(H2 O) HELIX 1 AA1 VAL X 29 GLY X 42 1 14 HELIX 2 AA2 THR X 119 ASP X 123 5 5 HELIX 3 AA3 GLY X 135 PHE X 145 1 11 SHEET 1 AA1 8 PHE X 53 ILE X 57 0 SHEET 2 AA1 8 MET X 61 ALA X 64 -1 O GLN X 63 N ARG X 55 SHEET 3 AA1 8 PHE X 112 CYS X 115 -1 O PHE X 112 N ALA X 64 SHEET 4 AA1 8 VAL X 97 MET X 100 -1 N SER X 99 O PHE X 113 SHEET 5 AA1 8 VAL X 128 GLU X 134 -1 O PHE X 129 N LEU X 98 SHEET 6 AA1 8 LYS X 15 LEU X 24 -1 N VAL X 21 O GLU X 134 SHEET 7 AA1 8 LEU X 5 ALA X 12 -1 N VAL X 10 O LEU X 17 SHEET 8 AA1 8 ILE X 156 GLN X 163 -1 O ASP X 160 N ASP X 9 CRYST1 40.279 60.265 66.592 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024827 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015017 0.00000