HEADER ISOMERASE 10-JAN-22 7TH6 TITLE STRUCTURE OF CYCLOPHILIN D PEPTIDYL-PROLYL ISOMERASE DOMAIN BOUND TO TITLE 2 MACROCYCLIC INHIBITOR B21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE F, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPIASE F,CYCLOPHILIN D,CYP-D,CYPD,CYCLOPHILIN F, COMPND 5 MITOCHONDRIAL CYCLOPHILIN,CYP-M,ROTAMASE F; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIF, CYP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS OXIDATIVE STRESS, NECROSIS, MITOCHONDRIAL PERMEABILITY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.RANGWALA,M.K.THAKUR,M.A.SEELIGER,A.A.PETERSON,D.R.LIU REVDAT 4 18-OCT-23 7TH6 1 REMARK REVDAT 3 02-NOV-22 7TH6 1 JRNL REVDAT 2 12-OCT-22 7TH6 1 JRNL REVDAT 1 24-AUG-22 7TH6 0 JRNL AUTH A.A.PETERSON,A.M.RANGWALA,M.K.THAKUR,P.S.WARD,C.HUNG, JRNL AUTH 2 I.R.OUTHWAITE,A.I.CHAN,D.L.USANOV,V.K.MOOTHA,M.A.SEELIGER, JRNL AUTH 3 D.R.LIU JRNL TITL DISCOVERY AND MOLECULAR BASIS OF SUBTYPE-SELECTIVE JRNL TITL 2 CYCLOPHILIN INHIBITORS. JRNL REF NAT.CHEM.BIOL. V. 18 1184 2022 JRNL REFN ESSN 1552-4469 JRNL PMID 36163383 JRNL DOI 10.1038/S41589-022-01116-1 REMARK 2 REMARK 2 RESOLUTION. 0.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 82203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.430 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.9600 - 2.3400 1.00 6280 158 0.1338 0.1593 REMARK 3 2 2.3400 - 1.8600 1.00 6238 156 0.1160 0.1274 REMARK 3 3 1.8600 - 1.6200 0.99 6151 153 0.1226 0.1259 REMARK 3 4 1.6200 - 1.4700 0.99 6148 157 0.1212 0.1389 REMARK 3 5 1.4700 - 1.3700 1.00 6178 154 0.1221 0.1519 REMARK 3 6 1.3700 - 1.2900 1.00 6217 154 0.1253 0.1340 REMARK 3 7 1.2900 - 1.2200 1.00 6215 155 0.1298 0.1463 REMARK 3 8 1.2200 - 1.1700 1.00 6179 153 0.1353 0.1539 REMARK 3 9 1.1700 - 1.1200 1.00 6212 153 0.1431 0.1500 REMARK 3 10 1.1200 - 1.0900 1.00 6235 159 0.1528 0.1437 REMARK 3 11 1.0900 - 1.0500 0.94 5844 145 0.1840 0.1845 REMARK 3 12 1.0500 - 1.0200 0.79 4873 123 0.2259 0.2680 REMARK 3 13 1.0200 - 0.9900 0.69 4257 105 0.2907 0.3010 REMARK 3 14 0.9900 - 0.9700 0.51 3179 72 0.3412 0.3526 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.101 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.614 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1382 REMARK 3 ANGLE : 1.280 1872 REMARK 3 CHIRALITY : 0.109 194 REMARK 3 PLANARITY : 0.014 246 REMARK 3 DIHEDRAL : 12.174 264 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4456 -16.0731 5.2356 REMARK 3 T TENSOR REMARK 3 T11: 0.0673 T22: 0.0728 REMARK 3 T33: 0.0749 T12: 0.0021 REMARK 3 T13: -0.0035 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.2045 L22: 0.4711 REMARK 3 L33: 0.6636 L12: -0.2212 REMARK 3 L13: 0.0364 L23: 0.1557 REMARK 3 S TENSOR REMARK 3 S11: -0.0361 S12: 0.0470 S13: -0.0159 REMARK 3 S21: -0.0442 S22: -0.0078 S23: 0.0282 REMARK 3 S31: 0.0041 S32: -0.0413 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2127 -12.6822 13.9756 REMARK 3 T TENSOR REMARK 3 T11: 0.0576 T22: 0.0703 REMARK 3 T33: 0.0779 T12: -0.0008 REMARK 3 T13: -0.0018 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.3454 L22: 0.2157 REMARK 3 L33: 0.2219 L12: -0.0990 REMARK 3 L13: -0.0399 L23: 0.1178 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: 0.0283 S13: -0.0377 REMARK 3 S21: -0.0017 S22: 0.0225 S23: -0.0494 REMARK 3 S31: 0.0079 S32: 0.0583 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0371 -12.6329 15.6567 REMARK 3 T TENSOR REMARK 3 T11: 0.0628 T22: 0.0698 REMARK 3 T33: 0.0682 T12: -0.0017 REMARK 3 T13: -0.0033 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.6016 L22: 0.5333 REMARK 3 L33: 0.5490 L12: 0.4592 REMARK 3 L13: -0.1333 L23: 0.2063 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.0016 S13: -0.0597 REMARK 3 S21: 0.0394 S22: -0.0290 S23: 0.0388 REMARK 3 S31: 0.0359 S32: -0.0239 S33: 0.0027 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0945 -14.9847 24.7526 REMARK 3 T TENSOR REMARK 3 T11: 0.0798 T22: 0.0947 REMARK 3 T33: 0.0858 T12: 0.0013 REMARK 3 T13: -0.0008 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.1116 L22: 0.1457 REMARK 3 L33: 0.1593 L12: -0.1250 REMARK 3 L13: -0.0255 L23: -0.0009 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: -0.1327 S13: -0.1101 REMARK 3 S21: 0.0819 S22: -0.0252 S23: -0.0083 REMARK 3 S31: 0.0663 S32: 0.0247 S33: 0.0013 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0251 -2.0829 16.5082 REMARK 3 T TENSOR REMARK 3 T11: 0.0620 T22: 0.0594 REMARK 3 T33: 0.0551 T12: 0.0027 REMARK 3 T13: 0.0020 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.4388 L22: 0.3043 REMARK 3 L33: 0.3716 L12: 0.0854 REMARK 3 L13: -0.0629 L23: 0.1493 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: -0.0073 S13: 0.0416 REMARK 3 S21: -0.0110 S22: -0.0044 S23: -0.0058 REMARK 3 S31: -0.0972 S32: -0.0053 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8101 -3.8969 10.8563 REMARK 3 T TENSOR REMARK 3 T11: 0.0597 T22: 0.0553 REMARK 3 T33: 0.0590 T12: 0.0024 REMARK 3 T13: -0.0023 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.4117 L22: 0.5696 REMARK 3 L33: 0.3472 L12: 0.1182 REMARK 3 L13: 0.0377 L23: -0.1902 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: 0.0292 S13: -0.0069 REMARK 3 S21: -0.0476 S22: 0.0257 S23: -0.0039 REMARK 3 S31: -0.0745 S32: 0.0426 S33: 0.0082 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2941 -8.3118 4.3041 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.1096 REMARK 3 T33: 0.1024 T12: 0.0011 REMARK 3 T13: -0.0125 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.1119 L22: 0.0453 REMARK 3 L33: 0.2921 L12: 0.0043 REMARK 3 L13: 0.1023 L23: 0.0402 REMARK 3 S TENSOR REMARK 3 S11: 0.0712 S12: 0.1449 S13: 0.0956 REMARK 3 S21: -0.0568 S22: -0.0004 S23: 0.1036 REMARK 3 S31: -0.0876 S32: -0.1375 S33: -0.0014 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3644 -9.2801 14.6101 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.1108 REMARK 3 T33: 0.1517 T12: 0.0017 REMARK 3 T13: 0.0051 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.2687 L22: 0.0656 REMARK 3 L33: 0.1994 L12: -0.1166 REMARK 3 L13: 0.1646 L23: -0.1099 REMARK 3 S TENSOR REMARK 3 S11: 0.0218 S12: -0.0149 S13: 0.0103 REMARK 3 S21: 0.0839 S22: -0.0763 S23: 0.2097 REMARK 3 S31: -0.0083 S32: -0.0712 S33: -0.0163 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7547 -19.6875 7.8666 REMARK 3 T TENSOR REMARK 3 T11: 0.0799 T22: 0.0822 REMARK 3 T33: 0.0941 T12: 0.0019 REMARK 3 T13: 0.0017 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.0507 L22: 0.1180 REMARK 3 L33: 0.1696 L12: -0.0158 REMARK 3 L13: 0.0689 L23: 0.0714 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: 0.0127 S13: 0.0005 REMARK 3 S21: -0.0346 S22: 0.0194 S23: -0.0278 REMARK 3 S31: 0.0372 S32: 0.0240 S33: -0.0058 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262288. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92016 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR; REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82203 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.970 REMARK 200 RESOLUTION RANGE LOW (A) : 30.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 1.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BIT REMARK 200 REMARK 200 REMARK: BLADED, TABULAR, ROUGHLY 0.3-0.5 MM IN LENGTH REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350 0.5 M KH2PO4 PROTEIN AND REMARK 280 INHIBITOR WERE MIXED IN RATIO 1:2 1 UL OF PROTEIN:INHIBITOR REMARK 280 COMPLEX WAS MIXED WITH 1 UL MOTHER LIQUOR, PH 7.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.75450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.63175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.87725 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 44 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 123 O HOH A 401 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 193 CZ ARG A 193 NH2 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 72 CB - CA - C ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG A 193 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 193 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 102 -79.84 -140.86 REMARK 500 THR A 161 60.22 -106.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 594 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 595 DISTANCE = 5.94 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7TGS RELATED DB: PDB REMARK 900 7TGS CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TGT RELATED DB: PDB REMARK 900 7TGT CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TGU RELATED DB: PDB REMARK 900 7TGU CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TGV RELATED DB: PDB REMARK 900 7TGC CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TH1 RELATED DB: PDB REMARK 900 7TH1 CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. DBREF 7TH6 A 44 207 UNP P30405 PPIF_HUMAN 44 207 SEQADV 7TH6 ILE A 175 UNP P30405 LYS 175 ENGINEERED MUTATION SEQRES 1 A 164 GLY ASN PRO LEU VAL TYR LEU ASP VAL ASP ALA ASN GLY SEQRES 2 A 164 LYS PRO LEU GLY ARG VAL VAL LEU GLU LEU LYS ALA ASP SEQRES 3 A 164 VAL VAL PRO LYS THR ALA GLU ASN PHE ARG ALA LEU CYS SEQRES 4 A 164 THR GLY GLU LYS GLY PHE GLY TYR LYS GLY SER THR PHE SEQRES 5 A 164 HIS ARG VAL ILE PRO SER PHE MET CYS GLN ALA GLY ASP SEQRES 6 A 164 PHE THR ASN HIS ASN GLY THR GLY GLY LYS SER ILE TYR SEQRES 7 A 164 GLY SER ARG PHE PRO ASP GLU ASN PHE THR LEU LYS HIS SEQRES 8 A 164 VAL GLY PRO GLY VAL LEU SER MET ALA ASN ALA GLY PRO SEQRES 9 A 164 ASN THR ASN GLY SER GLN PHE PHE ILE CYS THR ILE LYS SEQRES 10 A 164 THR ASP TRP LEU ASP GLY LYS HIS VAL VAL PHE GLY HIS SEQRES 11 A 164 VAL ILE GLU GLY MET ASP VAL VAL LYS LYS ILE GLU SER SEQRES 12 A 164 PHE GLY SER LYS SER GLY ARG THR SER LYS LYS ILE VAL SEQRES 13 A 164 ILE THR ASP CYS GLY GLN LEU SER HET I56 A 301 126 HETNAM I56 4'-{[(4S,7S,11R,13E,19S)-19-{[2-(2-AMINOETHOXY) HETNAM 2 I56 ETHYL]CARBAMOYL}-7-BENZYL-3,6,12,15,21-PENTAOXO-1,3,4, HETNAM 3 I56 5,6,7,8,9,10,12,15,16,17,18,19,20,21,22-OCTADECAHYDRO- HETNAM 4 I56 2H-7,11-METHANO-2,5,11,16,20- HETNAM 5 I56 BENZOPENTAAZACYCLOTETRACOSIN-4-YL]METHYL}-2-METHYL[1, HETNAM 6 I56 1'-BIPHENYL]-4-CARBOXYLIC ACID FORMUL 2 I56 C51 H59 N7 O9 FORMUL 3 HOH *195(H2 O) HELIX 1 AA1 VAL A 71 GLY A 84 1 14 HELIX 2 AA2 THR A 161 ASP A 165 5 5 HELIX 3 AA3 GLY A 177 PHE A 187 1 11 SHEET 1 AA1 8 PHE A 95 ILE A 99 0 SHEET 2 AA1 8 MET A 103 ALA A 106 -1 O GLN A 105 N ARG A 97 SHEET 3 AA1 8 PHE A 154 CYS A 157 -1 O PHE A 154 N ALA A 106 SHEET 4 AA1 8 VAL A 139 MET A 142 -1 N VAL A 139 O CYS A 157 SHEET 5 AA1 8 VAL A 170 GLU A 176 -1 O GLY A 172 N LEU A 140 SHEET 6 AA1 8 LYS A 57 LEU A 66 -1 N VAL A 63 O ILE A 175 SHEET 7 AA1 8 LEU A 47 ALA A 54 -1 N VAL A 52 O LEU A 59 SHEET 8 AA1 8 ILE A 198 GLN A 205 -1 O ASP A 202 N ASP A 51 CRYST1 38.632 38.632 103.509 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025885 0.000000 0.000000 0.00000 SCALE2 0.000000 0.025885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009661 0.00000