HEADER ISOMERASE 10-JAN-22 7TH7 TITLE STRUCTURE OF CYCLOPHILIN D PEPTIDYL-PROLYL ISOMERASE DOMAIN BOUND TO TITLE 2 MACROCYCLIC INHIBITOR B23 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE F, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPIASE F,CYCLOPHILIN D,CYP-D,CYPD,CYCLOPHILIN F, COMPND 5 MITOCHONDRIAL CYCLOPHILIN,CYP-M,ROTAMASE F; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIF, CYP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS OXIDATIVE STRESS, NECROSIS, MITOCHONDRIAL PERMEABILITY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.RANGWALA,M.K.THAKUR,M.A.SEELIGER,A.A.PETERSON,D.R.LIU REVDAT 4 18-OCT-23 7TH7 1 REMARK REVDAT 3 02-NOV-22 7TH7 1 JRNL REVDAT 2 12-OCT-22 7TH7 1 JRNL REVDAT 1 24-AUG-22 7TH7 0 JRNL AUTH A.A.PETERSON,A.M.RANGWALA,M.K.THAKUR,P.S.WARD,C.HUNG, JRNL AUTH 2 I.R.OUTHWAITE,A.I.CHAN,D.L.USANOV,V.K.MOOTHA,M.A.SEELIGER, JRNL AUTH 3 D.R.LIU JRNL TITL DISCOVERY AND MOLECULAR BASIS OF SUBTYPE-SELECTIVE JRNL TITL 2 CYCLOPHILIN INHIBITORS. JRNL REF NAT.CHEM.BIOL. V. 18 1184 2022 JRNL REFN ESSN 1552-4469 JRNL PMID 36163383 JRNL DOI 10.1038/S41589-022-01116-1 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 42114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.147 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.350 REMARK 3 FREE R VALUE TEST SET COUNT : 1831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.7200 - 3.0600 1.00 3518 162 0.1507 0.1592 REMARK 3 2 3.0600 - 2.4300 1.00 3366 151 0.1414 0.1445 REMARK 3 3 2.4300 - 2.1200 1.00 3339 147 0.1253 0.1361 REMARK 3 4 2.1200 - 1.9300 1.00 3282 152 0.1246 0.1386 REMARK 3 5 1.9300 - 1.7900 1.00 3322 149 0.1232 0.1702 REMARK 3 6 1.7900 - 1.6800 1.00 3264 155 0.1264 0.1389 REMARK 3 7 1.6800 - 1.6000 1.00 3293 145 0.1216 0.1274 REMARK 3 8 1.6000 - 1.5300 1.00 3264 151 0.1166 0.1152 REMARK 3 9 1.5300 - 1.4700 0.99 3243 146 0.1180 0.1252 REMARK 3 10 1.4700 - 1.4200 0.97 3158 142 0.1253 0.1387 REMARK 3 11 1.4200 - 1.3700 0.88 2868 132 0.1347 0.1599 REMARK 3 12 1.3700 - 1.3400 0.74 2404 112 0.1562 0.2074 REMARK 3 13 1.3400 - 1.3000 0.60 1962 87 0.1873 0.1866 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.077 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.391 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1374 REMARK 3 ANGLE : 1.200 1857 REMARK 3 CHIRALITY : 0.085 195 REMARK 3 PLANARITY : 0.009 240 REMARK 3 DIHEDRAL : 32.824 204 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4137 3.3085 17.1057 REMARK 3 T TENSOR REMARK 3 T11: 0.0856 T22: 0.0833 REMARK 3 T33: 0.1022 T12: 0.0034 REMARK 3 T13: 0.0011 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.0355 L22: 0.4041 REMARK 3 L33: 0.2666 L12: 0.0715 REMARK 3 L13: -0.0378 L23: 0.0164 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: 0.0345 S13: -0.1055 REMARK 3 S21: 0.0494 S22: 0.0164 S23: 0.0471 REMARK 3 S31: 0.0163 S32: -0.0095 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5485 9.5200 24.6505 REMARK 3 T TENSOR REMARK 3 T11: 0.0706 T22: 0.0931 REMARK 3 T33: 0.0894 T12: 0.0058 REMARK 3 T13: -0.0037 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.2005 L22: 0.2546 REMARK 3 L33: 0.1836 L12: 0.0444 REMARK 3 L13: -0.0506 L23: -0.0195 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: -0.0550 S13: -0.1224 REMARK 3 S21: 0.0826 S22: -0.0128 S23: -0.1583 REMARK 3 S31: 0.1019 S32: 0.1330 S33: 0.0018 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3368 14.6422 18.3679 REMARK 3 T TENSOR REMARK 3 T11: 0.0733 T22: 0.0812 REMARK 3 T33: 0.0659 T12: -0.0023 REMARK 3 T13: 0.0010 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.0980 L22: 0.2447 REMARK 3 L33: 0.0895 L12: 0.1246 REMARK 3 L13: 0.0661 L23: 0.1376 REMARK 3 S TENSOR REMARK 3 S11: 0.0225 S12: -0.0025 S13: 0.0154 REMARK 3 S21: 0.0115 S22: -0.0146 S23: 0.0395 REMARK 3 S31: 0.0136 S32: -0.0066 S33: 0.0042 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4001 20.5582 23.9320 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.0909 REMARK 3 T33: 0.0906 T12: -0.0013 REMARK 3 T13: 0.0065 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.2160 L22: 0.3045 REMARK 3 L33: 0.4349 L12: 0.2166 REMARK 3 L13: -0.2566 L23: -0.3490 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: -0.1436 S13: 0.1001 REMARK 3 S21: 0.2064 S22: 0.0508 S23: 0.2204 REMARK 3 S31: -0.0628 S32: -0.1212 S33: 0.0012 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2523 20.5980 29.4262 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.0895 REMARK 3 T33: 0.0720 T12: 0.0038 REMARK 3 T13: -0.0028 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.0530 L22: 0.0085 REMARK 3 L33: 0.0913 L12: 0.0151 REMARK 3 L13: 0.0375 L23: 0.0038 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: -0.0613 S13: 0.0660 REMARK 3 S21: 0.0812 S22: 0.0100 S23: -0.0428 REMARK 3 S31: -0.1030 S32: 0.0414 S33: 0.0004 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3031 16.5311 13.7083 REMARK 3 T TENSOR REMARK 3 T11: 0.0666 T22: 0.0757 REMARK 3 T33: 0.0671 T12: -0.0079 REMARK 3 T13: 0.0037 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.5595 L22: 0.8836 REMARK 3 L33: 0.8722 L12: -0.1269 REMARK 3 L13: 0.1132 L23: 0.5674 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: 0.0672 S13: 0.0349 REMARK 3 S21: -0.0821 S22: 0.0385 S23: -0.0803 REMARK 3 S31: -0.0856 S32: 0.1166 S33: 0.1486 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8695 7.7632 7.0413 REMARK 3 T TENSOR REMARK 3 T11: 0.0951 T22: 0.0864 REMARK 3 T33: 0.0983 T12: 0.0010 REMARK 3 T13: -0.0049 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0432 L22: 0.1507 REMARK 3 L33: 0.0781 L12: 0.0337 REMARK 3 L13: 0.0142 L23: -0.0302 REMARK 3 S TENSOR REMARK 3 S11: 0.1287 S12: 0.0818 S13: 0.0390 REMARK 3 S21: -0.1015 S22: -0.0919 S23: -0.1088 REMARK 3 S31: 0.0497 S32: 0.0236 S33: 0.0012 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0045 18.4467 9.2971 REMARK 3 T TENSOR REMARK 3 T11: 0.0859 T22: 0.0974 REMARK 3 T33: 0.1122 T12: 0.0184 REMARK 3 T13: -0.0081 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.6550 L22: 0.4306 REMARK 3 L33: 1.2396 L12: 0.3147 REMARK 3 L13: -0.5186 L23: 0.2322 REMARK 3 S TENSOR REMARK 3 S11: 0.0728 S12: -0.0351 S13: 0.1614 REMARK 3 S21: -0.0905 S22: 0.0188 S23: 0.1981 REMARK 3 S31: -0.2408 S32: -0.0830 S33: -0.0020 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0665 3.7608 22.0260 REMARK 3 T TENSOR REMARK 3 T11: 0.1075 T22: 0.0910 REMARK 3 T33: 0.1008 T12: 0.0019 REMARK 3 T13: -0.0074 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.1196 L22: 0.1227 REMARK 3 L33: 0.2295 L12: 0.1096 REMARK 3 L13: -0.0721 L23: -0.0209 REMARK 3 S TENSOR REMARK 3 S11: 0.0635 S12: -0.0231 S13: -0.1892 REMARK 3 S21: 0.0627 S22: -0.0537 S23: 0.0549 REMARK 3 S31: 0.1945 S32: 0.0340 S33: -0.0051 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TH7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR; REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BIT REMARK 200 REMARK 200 REMARK: BLADED, TABULAR, ROUGHLY 0.3-0.5 MM IN LENGTH REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 3350 0.5 M KH2PO4 PROTEIN AND REMARK 280 INHIBITOR WERE MIXED IN RATIO 1:3 1 UL OF PROTEIN:INHIBITOR REMARK 280 COMPLEX WAS MIXED WITH 1 UL MOTHER LIQUOR, PH 8.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.58850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.53550 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.58850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.53550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 560 O HOH A 583 2.14 REMARK 500 OD1 ASP A 53 O HOH A 401 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 102 -84.11 -150.81 REMARK 500 THR A 161 63.48 -106.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 620 DISTANCE = 6.18 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7TGS RELATED DB: PDB REMARK 900 7TGS CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TGT RELATED DB: PDB REMARK 900 7TGT CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TGU RELATED DB: PDB REMARK 900 7TGU CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TGV RELATED DB: PDB REMARK 900 7TGV CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TH1 RELATED DB: PDB REMARK 900 7TH1 CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TH6 RELATED DB: PDB REMARK 900 7TH6 CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. DBREF 7TH7 A 45 207 UNP P30405 PPIF_HUMAN 45 207 SEQADV 7TH7 ILE A 175 UNP P30405 LYS 175 ENGINEERED MUTATION SEQRES 1 A 163 ASN PRO LEU VAL TYR LEU ASP VAL ASP ALA ASN GLY LYS SEQRES 2 A 163 PRO LEU GLY ARG VAL VAL LEU GLU LEU LYS ALA ASP VAL SEQRES 3 A 163 VAL PRO LYS THR ALA GLU ASN PHE ARG ALA LEU CYS THR SEQRES 4 A 163 GLY GLU LYS GLY PHE GLY TYR LYS GLY SER THR PHE HIS SEQRES 5 A 163 ARG VAL ILE PRO SER PHE MET CYS GLN ALA GLY ASP PHE SEQRES 6 A 163 THR ASN HIS ASN GLY THR GLY GLY LYS SER ILE TYR GLY SEQRES 7 A 163 SER ARG PHE PRO ASP GLU ASN PHE THR LEU LYS HIS VAL SEQRES 8 A 163 GLY PRO GLY VAL LEU SER MET ALA ASN ALA GLY PRO ASN SEQRES 9 A 163 THR ASN GLY SER GLN PHE PHE ILE CYS THR ILE LYS THR SEQRES 10 A 163 ASP TRP LEU ASP GLY LYS HIS VAL VAL PHE GLY HIS VAL SEQRES 11 A 163 ILE GLU GLY MET ASP VAL VAL LYS LYS ILE GLU SER PHE SEQRES 12 A 163 GLY SER LYS SER GLY ARG THR SER LYS LYS ILE VAL ILE SEQRES 13 A 163 THR ASP CYS GLY GLN LEU SER HET I5E A 301 128 HETNAM I5E 3-(4'-{[(4S,7S,11R,19S)-19-{[2-(2-AMINOETHOXY) HETNAM 2 I5E ETHYL]CARBAMOYL}-7-BENZYL-3,6,12,15,21-PENTAOXO-1,3,4, HETNAM 3 I5E 5,6,7,8,9,10,12,13,14,15,16,17,18,19,20,21,22- HETNAM 4 I5E ICOSAHYDRO-2H-7,11-METHANO-2,5,11,16,20- HETNAM 5 I5E BENZOPENTAAZACYCLOTETRACOSIN-4-YL]METHYL}[1,1'- HETNAM 6 I5E BIPHENYL]-4-YL)PROPANOIC ACID FORMUL 2 I5E C52 H63 N7 O9 FORMUL 3 HOH *220(H2 O) HELIX 1 AA1 VAL A 71 GLY A 84 1 14 HELIX 2 AA2 THR A 161 ASP A 165 5 5 HELIX 3 AA3 GLY A 177 PHE A 187 1 11 SHEET 1 AA1 8 PHE A 95 ILE A 99 0 SHEET 2 AA1 8 MET A 103 ALA A 106 -1 O GLN A 105 N ARG A 97 SHEET 3 AA1 8 PHE A 154 CYS A 157 -1 O PHE A 154 N ALA A 106 SHEET 4 AA1 8 VAL A 139 MET A 142 -1 N VAL A 139 O CYS A 157 SHEET 5 AA1 8 VAL A 170 GLU A 176 -1 O PHE A 171 N LEU A 140 SHEET 6 AA1 8 LYS A 57 LEU A 66 -1 N VAL A 63 O ILE A 175 SHEET 7 AA1 8 LEU A 47 ALA A 54 -1 N VAL A 52 O LEU A 59 SHEET 8 AA1 8 ILE A 198 GLN A 205 -1 O ASP A 202 N ASP A 51 CRYST1 38.542 67.177 69.071 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025946 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014478 0.00000