HEADER ISOMERASE 10-JAN-22 7THD TITLE STRUCTURE OF CYCLOPHILIN D PEPTIDYL-PROLYL ISOMERASE DOMAIN BOUND TO TITLE 2 MACROCYCLIC INHIBITOR B52 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE F, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPIASE F,CYCLOPHILIN D,CYP-D,CYPD,CYCLOPHILIN F, COMPND 5 MITOCHONDRIAL CYCLOPHILIN,CYP-M,ROTAMASE F; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIF, CYP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS OXIDATIVE STRESS, NECROSIS, MITOCHONDRIAL PERMEABILITY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.RANGWALA,M.K.THAKUR,M.A.SEELIGER,A.A.PETERSON,D.R.LIU REVDAT 4 18-OCT-23 7THD 1 REMARK REVDAT 3 02-NOV-22 7THD 1 JRNL REVDAT 2 12-OCT-22 7THD 1 JRNL REVDAT 1 24-AUG-22 7THD 0 JRNL AUTH A.A.PETERSON,A.M.RANGWALA,M.K.THAKUR,P.S.WARD,C.HUNG, JRNL AUTH 2 I.R.OUTHWAITE,A.I.CHAN,D.L.USANOV,V.K.MOOTHA,M.A.SEELIGER, JRNL AUTH 3 D.R.LIU JRNL TITL DISCOVERY AND MOLECULAR BASIS OF SUBTYPE-SELECTIVE JRNL TITL 2 CYCLOPHILIN INHIBITORS. JRNL REF NAT.CHEM.BIOL. V. 18 1184 2022 JRNL REFN ESSN 1552-4469 JRNL PMID 36163383 JRNL DOI 10.1038/S41589-022-01116-1 REMARK 2 REMARK 2 RESOLUTION. 1.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 62243 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.230 REMARK 3 FREE R VALUE TEST SET COUNT : 2011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.7300 - 2.7900 1.00 4608 156 0.1553 0.1948 REMARK 3 2 2.7900 - 2.2200 1.00 4436 143 0.1303 0.1424 REMARK 3 3 2.2200 - 1.9400 1.00 4377 147 0.1195 0.1315 REMARK 3 4 1.9400 - 1.7600 1.00 4350 145 0.1188 0.1312 REMARK 3 5 1.7600 - 1.6300 1.00 4360 150 0.1190 0.1255 REMARK 3 6 1.6300 - 1.5400 1.00 4321 139 0.1184 0.1116 REMARK 3 7 1.5400 - 1.4600 1.00 4317 147 0.1201 0.1070 REMARK 3 8 1.4600 - 1.4000 1.00 4325 137 0.1270 0.1419 REMARK 3 9 1.4000 - 1.3400 1.00 4279 146 0.1308 0.1486 REMARK 3 10 1.3400 - 1.3000 1.00 4299 150 0.1385 0.1306 REMARK 3 11 1.3000 - 1.2600 1.00 4305 139 0.1440 0.1662 REMARK 3 12 1.2600 - 1.2200 1.00 4241 149 0.1483 0.1760 REMARK 3 13 1.2200 - 1.1900 0.99 4264 134 0.1584 0.1618 REMARK 3 14 1.1900 - 1.1600 0.88 3750 129 0.1869 0.1943 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.071 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1348 REMARK 3 ANGLE : 1.327 1819 REMARK 3 CHIRALITY : 0.091 191 REMARK 3 PLANARITY : 0.012 236 REMARK 3 DIHEDRAL : 19.266 264 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4001 3.2192 17.1263 REMARK 3 T TENSOR REMARK 3 T11: 0.0728 T22: 0.0799 REMARK 3 T33: 0.1004 T12: 0.0033 REMARK 3 T13: 0.0077 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0918 L22: 1.1329 REMARK 3 L33: 0.9917 L12: 0.0248 REMARK 3 L13: -0.1659 L23: 0.0035 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: 0.0295 S13: -0.1195 REMARK 3 S21: 0.0263 S22: -0.0012 S23: 0.0602 REMARK 3 S31: 0.0479 S32: -0.0341 S33: -0.0007 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6325 9.5361 24.6730 REMARK 3 T TENSOR REMARK 3 T11: 0.0753 T22: 0.1016 REMARK 3 T33: 0.1024 T12: 0.0031 REMARK 3 T13: -0.0055 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.2003 L22: 0.4100 REMARK 3 L33: 0.2721 L12: 0.0425 REMARK 3 L13: 0.0294 L23: -0.0356 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: -0.0478 S13: -0.0941 REMARK 3 S21: 0.1080 S22: -0.0037 S23: -0.1766 REMARK 3 S31: 0.0497 S32: 0.1380 S33: 0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3451 14.5888 18.3361 REMARK 3 T TENSOR REMARK 3 T11: 0.0734 T22: 0.0748 REMARK 3 T33: 0.0684 T12: -0.0012 REMARK 3 T13: 0.0058 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.3451 L22: 0.3771 REMARK 3 L33: 0.2558 L12: 0.0033 REMARK 3 L13: 0.0589 L23: 0.2591 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: -0.0091 S13: 0.0203 REMARK 3 S21: 0.0128 S22: -0.0120 S23: 0.0501 REMARK 3 S31: -0.0323 S32: -0.0858 S33: -0.0034 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7525 20.2321 26.9085 REMARK 3 T TENSOR REMARK 3 T11: 0.1062 T22: 0.0919 REMARK 3 T33: 0.0794 T12: -0.0006 REMARK 3 T13: 0.0011 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.0689 L22: 0.3700 REMARK 3 L33: 0.3790 L12: -0.0535 REMARK 3 L13: 0.0712 L23: -0.1062 REMARK 3 S TENSOR REMARK 3 S11: -0.0569 S12: -0.0932 S13: 0.0603 REMARK 3 S21: 0.1329 S22: 0.0243 S23: 0.0203 REMARK 3 S31: -0.0958 S32: -0.0366 S33: -0.0006 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1779 17.9935 13.9972 REMARK 3 T TENSOR REMARK 3 T11: 0.0916 T22: 0.0868 REMARK 3 T33: 0.0846 T12: -0.0189 REMARK 3 T13: 0.0079 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.7330 L22: 0.6166 REMARK 3 L33: 0.4227 L12: -0.0823 REMARK 3 L13: 0.2841 L23: 0.2874 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: 0.0896 S13: 0.0640 REMARK 3 S21: -0.0955 S22: 0.0218 S23: -0.0805 REMARK 3 S31: -0.1696 S32: 0.1367 S33: 0.0005 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5748 12.2005 13.5019 REMARK 3 T TENSOR REMARK 3 T11: 0.0856 T22: 0.0884 REMARK 3 T33: 0.0860 T12: -0.0112 REMARK 3 T13: 0.0137 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.6188 L22: 0.1117 REMARK 3 L33: 0.3230 L12: -0.1592 REMARK 3 L13: 0.0791 L23: 0.0060 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: 0.0713 S13: -0.0705 REMARK 3 S21: -0.1462 S22: 0.0718 S23: -0.1553 REMARK 3 S31: -0.0418 S32: 0.1335 S33: -0.0019 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6513 7.9490 6.9526 REMARK 3 T TENSOR REMARK 3 T11: 0.0879 T22: 0.0983 REMARK 3 T33: 0.1025 T12: -0.0014 REMARK 3 T13: -0.0042 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.4756 L22: 0.5198 REMARK 3 L33: 0.2463 L12: -0.2116 REMARK 3 L13: 0.0289 L23: 0.0934 REMARK 3 S TENSOR REMARK 3 S11: 0.0941 S12: 0.0362 S13: 0.0275 REMARK 3 S21: -0.1164 S22: -0.0632 S23: 0.0068 REMARK 3 S31: 0.0438 S32: -0.0559 S33: -0.0004 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0728 18.3354 9.2881 REMARK 3 T TENSOR REMARK 3 T11: 0.0841 T22: 0.1418 REMARK 3 T33: 0.1349 T12: 0.0514 REMARK 3 T13: -0.0090 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.2225 L22: 0.9132 REMARK 3 L33: 2.3412 L12: 0.6849 REMARK 3 L13: -0.7499 L23: 0.5165 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: -0.0078 S13: 0.2382 REMARK 3 S21: -0.0683 S22: 0.0796 S23: 0.3295 REMARK 3 S31: -0.2982 S32: -0.2029 S33: 0.0125 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0157 3.7187 22.0515 REMARK 3 T TENSOR REMARK 3 T11: 0.1088 T22: 0.0956 REMARK 3 T33: 0.1031 T12: 0.0026 REMARK 3 T13: -0.0018 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.1771 L22: 0.3610 REMARK 3 L33: 0.3459 L12: 0.2335 REMARK 3 L13: -0.0550 L23: 0.0357 REMARK 3 S TENSOR REMARK 3 S11: 0.1168 S12: -0.0189 S13: -0.1471 REMARK 3 S21: 0.0735 S22: -0.0869 S23: 0.0301 REMARK 3 S31: 0.1703 S32: 0.0206 S33: -0.0026 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7THD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92011 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR, REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62319 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.160 REMARK 200 RESOLUTION RANGE LOW (A) : 25.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.03362 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BIT REMARK 200 REMARK 200 REMARK: BLADED, TABULAR, ROUGHLY 0.3-0.5 MM IN LENGTH REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350 0.5 M KH2PO4 1 MM NACL REMARK 280 PROTEIN AND INHIBITOR WERE MIXED IN RATIO 1:2 1 UL OF PROTEIN: REMARK 280 INHIBITOR COMPLEX WAS MIXED WITH 1 UL MOTHER LIQUOR, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.51600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.66200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.51600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.66200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 197 O HOH A 404 1.58 REMARK 500 OE1 GLU A 176 O HOH A 402 1.92 REMARK 500 OD2 ASP A 53 O HOH A 403 2.02 REMARK 500 O HOH A 409 O HOH A 544 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 102 -84.57 -147.33 REMARK 500 THR A 161 61.86 -107.21 REMARK 500 PHE A 171 10.03 -142.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7TGS RELATED DB: PDB REMARK 900 7TGS CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TGT RELATED DB: PDB REMARK 900 7TGT CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TGU RELATED DB: PDB REMARK 900 7TGU CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TGV RELATED DB: PDB REMARK 900 7TGV CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TH1 RELATED DB: PDB REMARK 900 7TH1 CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TH6 RELATED DB: PDB REMARK 900 7TH6 CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TH7 RELATED DB: PDB REMARK 900 7TH7 CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7THC RELATED DB: PDB REMARK 900 7THC CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. DBREF 7THD A 45 207 UNP P30405 PPIF_HUMAN 45 207 SEQADV 7THD ILE A 175 UNP P30405 LYS 175 ENGINEERED MUTATION SEQRES 1 A 163 ASN PRO LEU VAL TYR LEU ASP VAL ASP ALA ASN GLY LYS SEQRES 2 A 163 PRO LEU GLY ARG VAL VAL LEU GLU LEU LYS ALA ASP VAL SEQRES 3 A 163 VAL PRO LYS THR ALA GLU ASN PHE ARG ALA LEU CYS THR SEQRES 4 A 163 GLY GLU LYS GLY PHE GLY TYR LYS GLY SER THR PHE HIS SEQRES 5 A 163 ARG VAL ILE PRO SER PHE MET CYS GLN ALA GLY ASP PHE SEQRES 6 A 163 THR ASN HIS ASN GLY THR GLY GLY LYS SER ILE TYR GLY SEQRES 7 A 163 SER ARG PHE PRO ASP GLU ASN PHE THR LEU LYS HIS VAL SEQRES 8 A 163 GLY PRO GLY VAL LEU SER MET ALA ASN ALA GLY PRO ASN SEQRES 9 A 163 THR ASN GLY SER GLN PHE PHE ILE CYS THR ILE LYS THR SEQRES 10 A 163 ASP TRP LEU ASP GLY LYS HIS VAL VAL PHE GLY HIS VAL SEQRES 11 A 163 ILE GLU GLY MET ASP VAL VAL LYS LYS ILE GLU SER PHE SEQRES 12 A 163 GLY SER LYS SER GLY ARG THR SER LYS LYS ILE VAL ILE SEQRES 13 A 163 THR ASP CYS GLY GLN LEU SER HET I4V A 301 131 HETNAM I4V [(4'-{[(4S,7S,11R,13E,19S)-19-{[2-(2-AMINOETHOXY) HETNAM 2 I4V ETHYL]CARBAMOYL}-7-BENZYL-3,6,12,15,21-PENTAOXO-1,3,4, HETNAM 3 I4V 5,6,7,8,9,10,12,15,16,17,18,19,20,21,22-OCTADECAHYDRO- HETNAM 4 I4V 2H-7,11-METHANO-2,5,11,16,20- HETNAM 5 I4V BENZOPENTAAZACYCLOTETRACOSIN-4-YL]METHYL}[1,1'- HETNAM 6 I4V BIPHENYL]-4-YL)METHYL]PROPANEDIOIC ACID FORMUL 2 I4V C53 H61 N7 O11 FORMUL 3 HOH *163(H2 O) HELIX 1 AA1 VAL A 71 GLY A 84 1 14 HELIX 2 AA2 THR A 161 ASP A 165 5 5 HELIX 3 AA3 GLY A 177 PHE A 187 1 11 SHEET 1 AA1 8 PHE A 95 ILE A 99 0 SHEET 2 AA1 8 MET A 103 ALA A 106 -1 O GLN A 105 N ARG A 97 SHEET 3 AA1 8 PHE A 154 CYS A 157 -1 O PHE A 154 N ALA A 106 SHEET 4 AA1 8 VAL A 139 MET A 142 -1 N VAL A 139 O CYS A 157 SHEET 5 AA1 8 VAL A 170 GLU A 176 -1 O PHE A 171 N LEU A 140 SHEET 6 AA1 8 LYS A 57 LEU A 66 -1 N VAL A 63 O ILE A 175 SHEET 7 AA1 8 LEU A 47 ALA A 54 -1 N VAL A 52 O LEU A 59 SHEET 8 AA1 8 ILE A 198 GLN A 205 -1 O ASP A 202 N ASP A 51 CRYST1 38.408 67.032 69.324 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026036 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014425 0.00000