HEADER ISOMERASE/ISOMERASE INHIBITOR 10-JAN-22 7THF TITLE STRUCTURE OF CYCLOPHILIN D PEPTIDYL-PROLYL ISOMERASE DOMAIN BOUND TO TITLE 2 MACROCYCLIC INHIBITOR B53 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE F, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPIASE F,CYCLOPHILIN D,CYP-D,CYPD,CYCLOPHILIN F, COMPND 5 MITOCHONDRIAL CYCLOPHILIN,CYP-M,ROTAMASE F; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIF, CYP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS OXIDATIVE STRESS, NECROSIS, MITOCHONDRIAL PERMEABILITY, ISOMERASE, KEYWDS 2 ISOMERASE-ISOMERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.M.RANGWALA,M.K.THAKUR,M.A.SEELIGER,A.A.PETERSON,D.R.LIU REVDAT 4 18-OCT-23 7THF 1 REMARK REVDAT 3 02-NOV-22 7THF 1 JRNL REVDAT 2 12-OCT-22 7THF 1 JRNL REVDAT 1 24-AUG-22 7THF 0 JRNL AUTH A.A.PETERSON,A.M.RANGWALA,M.K.THAKUR,P.S.WARD,C.HUNG, JRNL AUTH 2 I.R.OUTHWAITE,A.I.CHAN,D.L.USANOV,V.K.MOOTHA,M.A.SEELIGER, JRNL AUTH 3 D.R.LIU JRNL TITL DISCOVERY AND MOLECULAR BASIS OF SUBTYPE-SELECTIVE JRNL TITL 2 CYCLOPHILIN INHIBITORS. JRNL REF NAT.CHEM.BIOL. V. 18 1184 2022 JRNL REFN ESSN 1552-4469 JRNL PMID 36163383 JRNL DOI 10.1038/S41589-022-01116-1 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 71160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.6800 - 2.6600 1.00 5316 154 0.1543 0.1793 REMARK 3 2 2.6600 - 2.1100 1.00 5106 152 0.1302 0.1307 REMARK 3 3 2.1100 - 1.8400 1.00 5040 150 0.1231 0.1219 REMARK 3 4 1.8400 - 1.6800 1.00 5037 138 0.1220 0.1384 REMARK 3 5 1.6800 - 1.5600 1.00 5025 147 0.1244 0.1317 REMARK 3 6 1.5600 - 1.4600 1.00 4973 145 0.1238 0.1311 REMARK 3 7 1.4600 - 1.3900 1.00 4989 145 0.1287 0.1461 REMARK 3 8 1.3900 - 1.3300 1.00 4949 138 0.1347 0.1481 REMARK 3 9 1.3300 - 1.2800 0.99 4938 139 0.1409 0.1421 REMARK 3 10 1.2800 - 1.2300 0.99 4927 143 0.1339 0.1276 REMARK 3 11 1.2300 - 1.2000 0.98 4894 141 0.1369 0.1535 REMARK 3 12 1.2000 - 1.1600 0.98 4793 141 0.1400 0.1571 REMARK 3 13 1.1600 - 1.1300 0.97 4807 134 0.1491 0.1468 REMARK 3 14 1.1300 - 1.1000 0.88 4368 131 0.1802 0.2003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.067 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.913 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1384 REMARK 3 ANGLE : 1.063 1875 REMARK 3 CHIRALITY : 0.081 196 REMARK 3 PLANARITY : 0.008 244 REMARK 3 DIHEDRAL : 20.081 274 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7064 3.1997 16.9635 REMARK 3 T TENSOR REMARK 3 T11: 0.0880 T22: 0.0833 REMARK 3 T33: 0.1027 T12: 0.0019 REMARK 3 T13: 0.0033 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.2962 L22: 0.6401 REMARK 3 L33: 0.6530 L12: 0.0394 REMARK 3 L13: -0.0426 L23: 0.0817 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: 0.0181 S13: -0.1195 REMARK 3 S21: 0.0341 S22: -0.0053 S23: 0.0460 REMARK 3 S31: 0.0444 S32: -0.0180 S33: 0.0036 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9678 12.4217 20.8831 REMARK 3 T TENSOR REMARK 3 T11: 0.0646 T22: 0.0773 REMARK 3 T33: 0.0671 T12: 0.0002 REMARK 3 T13: 0.0036 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.3065 L22: 0.7722 REMARK 3 L33: 0.6027 L12: 0.0830 REMARK 3 L13: 0.0578 L23: 0.0315 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: -0.0191 S13: -0.0048 REMARK 3 S21: 0.0362 S22: -0.0104 S23: -0.0300 REMARK 3 S31: 0.0222 S32: 0.0209 S33: 0.0005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5829 20.1379 27.0343 REMARK 3 T TENSOR REMARK 3 T11: 0.1028 T22: 0.0987 REMARK 3 T33: 0.0903 T12: 0.0011 REMARK 3 T13: -0.0010 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.2143 L22: 0.1274 REMARK 3 L33: 0.2657 L12: -0.1415 REMARK 3 L13: 0.0127 L23: -0.0563 REMARK 3 S TENSOR REMARK 3 S11: -0.0387 S12: -0.0596 S13: 0.0709 REMARK 3 S21: 0.0919 S22: 0.0130 S23: 0.0243 REMARK 3 S31: -0.0846 S32: -0.0179 S33: -0.0026 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1126 17.9621 14.0016 REMARK 3 T TENSOR REMARK 3 T11: 0.0890 T22: 0.0922 REMARK 3 T33: 0.0879 T12: -0.0092 REMARK 3 T13: 0.0030 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.4828 L22: 0.4260 REMARK 3 L33: 0.2216 L12: -0.0047 REMARK 3 L13: 0.1903 L23: 0.1612 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: 0.0656 S13: 0.0496 REMARK 3 S21: -0.0722 S22: 0.0240 S23: -0.0861 REMARK 3 S31: -0.1016 S32: 0.1175 S33: 0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6260 11.4867 13.1876 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.0929 REMARK 3 T33: 0.0883 T12: -0.0042 REMARK 3 T13: 0.0052 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.3760 L22: 0.3360 REMARK 3 L33: 0.2780 L12: 0.0005 REMARK 3 L13: 0.0431 L23: -0.0019 REMARK 3 S TENSOR REMARK 3 S11: -0.0214 S12: 0.0780 S13: -0.0513 REMARK 3 S21: -0.1576 S22: 0.0675 S23: -0.0766 REMARK 3 S31: -0.0033 S32: 0.0955 S33: 0.0021 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8408 7.7415 6.9260 REMARK 3 T TENSOR REMARK 3 T11: 0.0992 T22: 0.1003 REMARK 3 T33: 0.1015 T12: -0.0039 REMARK 3 T13: -0.0053 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.0804 L22: 0.1326 REMARK 3 L33: 0.1115 L12: 0.0123 REMARK 3 L13: 0.0288 L23: 0.0105 REMARK 3 S TENSOR REMARK 3 S11: 0.0946 S12: 0.0438 S13: -0.0280 REMARK 3 S21: -0.0694 S22: -0.0658 S23: 0.0204 REMARK 3 S31: 0.0564 S32: -0.0366 S33: 0.0034 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0722 18.4039 9.3114 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.1358 REMARK 3 T33: 0.1395 T12: 0.0235 REMARK 3 T13: -0.0080 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.3228 L22: 0.1741 REMARK 3 L33: 0.6166 L12: 0.0233 REMARK 3 L13: -0.2364 L23: 0.0743 REMARK 3 S TENSOR REMARK 3 S11: 0.0501 S12: 0.0187 S13: 0.2115 REMARK 3 S21: 0.0088 S22: 0.0475 S23: 0.2831 REMARK 3 S31: -0.2872 S32: -0.2010 S33: 0.0156 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0467 3.6296 21.9010 REMARK 3 T TENSOR REMARK 3 T11: 0.1151 T22: 0.1024 REMARK 3 T33: 0.1028 T12: 0.0061 REMARK 3 T13: -0.0034 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.3991 L22: 0.4315 REMARK 3 L33: 0.4210 L12: -0.1337 REMARK 3 L13: 0.2479 L23: -0.2744 REMARK 3 S TENSOR REMARK 3 S11: 0.0991 S12: 0.0236 S13: -0.1329 REMARK 3 S21: 0.0064 S22: -0.0873 S23: 0.0461 REMARK 3 S31: 0.1646 S32: 0.0402 S33: 0.0092 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7THF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92011 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR, REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71217 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.59600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BIT REMARK 200 REMARK 200 REMARK: BLADED, TABULAR, ROUGHLY 0.3-0.5 MM IN LENGTH REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5% PEG 3350 0.5 M KH2PO4 1 MM NACL REMARK 280 PROTEIN AND INHIBITOR WERE MIXED IN RATIO 1:2 1 UL OF PROTEIN: REMARK 280 INHIBITOR COMPLEX WAS MIXED WITH 1 UL MOTHER LIQUOR, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.44250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.48400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.44250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.48400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 44 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 565 O HOH A 572 2.02 REMARK 500 OD1 ASP A 179 O HOH A 401 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 418 O HOH A 537 1655 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 102 -84.15 -145.63 REMARK 500 THR A 161 62.64 -105.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7TGS RELATED DB: PDB REMARK 900 7TGS CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TGT RELATED DB: PDB REMARK 900 7TGT CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TGU RELATED DB: PDB REMARK 900 7TGU CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TGV RELATED DB: PDB REMARK 900 7TGV CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TH1 RELATED DB: PDB REMARK 900 7TH1 CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TH6 RELATED DB: PDB REMARK 900 7TH6 CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7TH7 RELATED DB: PDB REMARK 900 7TH7 CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7THC RELATED DB: PDB REMARK 900 7THC CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. REMARK 900 RELATED ID: 7THD RELATED DB: PDB REMARK 900 7THD CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. DBREF 7THF A 44 207 UNP P30405 PPIF_HUMAN 44 207 SEQADV 7THF ILE A 175 UNP P30405 LYS 175 ENGINEERED MUTATION SEQRES 1 A 164 GLY ASN PRO LEU VAL TYR LEU ASP VAL ASP ALA ASN GLY SEQRES 2 A 164 LYS PRO LEU GLY ARG VAL VAL LEU GLU LEU LYS ALA ASP SEQRES 3 A 164 VAL VAL PRO LYS THR ALA GLU ASN PHE ARG ALA LEU CYS SEQRES 4 A 164 THR GLY GLU LYS GLY PHE GLY TYR LYS GLY SER THR PHE SEQRES 5 A 164 HIS ARG VAL ILE PRO SER PHE MET CYS GLN ALA GLY ASP SEQRES 6 A 164 PHE THR ASN HIS ASN GLY THR GLY GLY LYS SER ILE TYR SEQRES 7 A 164 GLY SER ARG PHE PRO ASP GLU ASN PHE THR LEU LYS HIS SEQRES 8 A 164 VAL GLY PRO GLY VAL LEU SER MET ALA ASN ALA GLY PRO SEQRES 9 A 164 ASN THR ASN GLY SER GLN PHE PHE ILE CYS THR ILE LYS SEQRES 10 A 164 THR ASP TRP LEU ASP GLY LYS HIS VAL VAL PHE GLY HIS SEQRES 11 A 164 VAL ILE GLU GLY MET ASP VAL VAL LYS LYS ILE GLU SER SEQRES 12 A 164 PHE GLY SER LYS SER GLY ARG THR SER LYS LYS ILE VAL SEQRES 13 A 164 ILE THR ASP CYS GLY GLN LEU SER HET I4R A 301 134 HETNAM I4R 3-(4'-{[(4S,7S,11R,13E,19S)-19-{[2-(2-AMINOETHOXY) HETNAM 2 I4R ETHYL]CARBAMOYL}-7-BENZYL-3,6,12,15,21-PENTAOXO-1,3,4, HETNAM 3 I4R 5,6,7,8,9,10,12,15,16,17,18,19,20,21,22-OCTADECAHYDRO- HETNAM 4 I4R 2H-7,11-METHANO-2,5,11,16,20- HETNAM 5 I4R BENZOPENTAAZACYCLOTETRACOSIN-4-YL]METHYL}[1,1'- HETNAM 6 I4R BIPHENYL]-4-YL)PENTANEDIOIC ACID FORMUL 2 I4R C54 H63 N7 O11 FORMUL 3 HOH *212(H2 O) HELIX 1 AA1 VAL A 71 GLY A 84 1 14 HELIX 2 AA2 THR A 161 ASP A 165 5 5 HELIX 3 AA3 GLY A 177 PHE A 187 1 11 SHEET 1 AA1 8 PHE A 95 ILE A 99 0 SHEET 2 AA1 8 MET A 103 ALA A 106 -1 O GLN A 105 N ARG A 97 SHEET 3 AA1 8 PHE A 154 CYS A 157 -1 O PHE A 154 N ALA A 106 SHEET 4 AA1 8 VAL A 139 MET A 142 -1 N VAL A 139 O CYS A 157 SHEET 5 AA1 8 VAL A 170 GLU A 176 -1 O PHE A 171 N LEU A 140 SHEET 6 AA1 8 LYS A 57 LEU A 66 -1 N VAL A 63 O ILE A 175 SHEET 7 AA1 8 LEU A 47 ALA A 54 -1 N VAL A 52 O LEU A 59 SHEET 8 AA1 8 ILE A 198 GLN A 205 -1 O ASP A 202 N ASP A 51 CRYST1 38.492 66.885 68.968 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025979 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014499 0.00000