HEADER VIRAL PROTEIN 11-JAN-22 7THH TITLE SUD-C AND UBL2 DOMAINS OF SARS COV-2 NSP3 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAPAIN-LIKE PROTEASE NSP3; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: SUD-C AND UBL2 DOMAINS, RESIDUES 1496-1623; COMPND 5 SYNONYM: NON-STRUCTURAL PROTEIN 3,NSP3,PL2-PRO,PAPAIN-LIKE COMPND 6 PROTEINASE,PL-PRO; COMPND 7 EC: 3.4.19.12,3.4.22.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS COVID-19, CORONAVIRUS, SARS, COV-2, NSP3, SARS CORONAVIRUS-UNIQUE KEYWDS 2 DOMAIN, SUD-C, UBIQUITIN-LIKE DOMAIN, UBL2, CSGID-IDP51000, CSGID- KEYWDS 3 IDP52003, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 4 CSGID, HYDROLASE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,R.JEDRZEJCZAK,M.ENDRES,P.WYDORSKI,L.JOACHIMIAK, AUTHOR 2 A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 2 18-OCT-23 7THH 1 REMARK REVDAT 1 19-JAN-22 7THH 0 JRNL AUTH J.OSIPIUK,R.JEDRZEJCZAK,M.ENDRES,P.WYDORSKI,L.JOACHIMIAK, JRNL AUTH 2 A.JOACHIMIAK, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL SUD-C AND UBL2 DOMAINS OF SARS COV-2 NSP3 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 161093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 8728 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10245 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 528 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6255 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.794 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6662 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6143 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9073 ; 1.450 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14255 ; 1.422 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 839 ; 6.467 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 333 ;33.867 ;23.844 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1128 ;12.343 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;22.303 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 902 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7544 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1510 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 12805 ; 2.561 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7THH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 169862 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 49.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 1.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 6WRH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM IODIDE, 20% PEG 3350, REMARK 280 PH 7.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.84650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 675 REMARK 465 SER E 675 REMARK 465 ASN F 805 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1072 O HOH A 1094 2.02 REMARK 500 OG SER C 743 O HOH C 1001 2.03 REMARK 500 OH TYR B 780 O HOH B 1001 2.12 REMARK 500 O HOH F 1013 O HOH F 1032 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 694 -120.54 55.10 REMARK 500 SER A 699 -70.22 -106.28 REMARK 500 PHE A 709 -62.71 -94.95 REMARK 500 ASP A 757 -7.69 -147.38 REMARK 500 LYS B 694 -119.65 57.52 REMARK 500 PHE B 709 -63.44 -98.19 REMARK 500 ASN B 722 65.06 68.33 REMARK 500 ASP B 757 -3.01 -144.80 REMARK 500 ILE B 759 -53.07 -122.93 REMARK 500 LYS C 694 -120.07 53.47 REMARK 500 SER C 699 -74.40 -107.28 REMARK 500 PHE C 709 -61.75 -98.07 REMARK 500 ASP C 757 -6.90 -144.44 REMARK 500 LYS D 694 -123.99 55.24 REMARK 500 SER D 699 -71.10 -110.22 REMARK 500 PHE D 709 -62.20 -98.88 REMARK 500 ASN D 722 60.53 71.81 REMARK 500 ASP D 757 -3.19 -146.67 REMARK 500 ILE D 759 -51.07 -123.09 REMARK 500 LYS E 694 -119.33 55.15 REMARK 500 PHE E 709 -60.09 -98.40 REMARK 500 ASP E 757 -5.14 -144.16 REMARK 500 LYS F 694 -123.10 56.08 REMARK 500 SER F 699 -71.45 -107.90 REMARK 500 PHE F 709 -60.78 -100.31 REMARK 500 ASP F 757 -6.06 -147.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1181 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1182 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B1170 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH C1186 DISTANCE = 5.98 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP52003 RELATED DB: TARGETTRACK DBREF 7THH A 678 805 UNP P0DTD1 R1AB_SARS2 1496 1623 DBREF 7THH B 678 805 UNP P0DTD1 R1AB_SARS2 1496 1623 DBREF 7THH C 678 805 UNP P0DTD1 R1AB_SARS2 1496 1623 DBREF 7THH D 678 805 UNP P0DTD1 R1AB_SARS2 1496 1623 DBREF 7THH E 678 805 UNP P0DTD1 R1AB_SARS2 1496 1623 DBREF 7THH F 678 805 UNP P0DTD1 R1AB_SARS2 1496 1623 SEQADV 7THH SER A 675 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH ASN A 676 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH ALA A 677 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH SER B 675 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH ASN B 676 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH ALA B 677 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH SER C 675 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH ASN C 676 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH ALA C 677 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH SER D 675 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH ASN D 676 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH ALA D 677 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH SER E 675 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH ASN E 676 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH ALA E 677 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH SER F 675 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH ASN F 676 UNP P0DTD1 EXPRESSION TAG SEQADV 7THH ALA F 677 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 131 SER ASN ALA THR PRO GLU GLU HIS PHE ILE GLU THR ILE SEQRES 2 A 131 SER LEU ALA GLY SER TYR LYS ASP TRP SER TYR SER GLY SEQRES 3 A 131 GLN SER THR GLN LEU GLY ILE GLU PHE LEU LYS ARG GLY SEQRES 4 A 131 ASP LYS SER VAL TYR TYR THR SER ASN PRO THR THR PHE SEQRES 5 A 131 HIS LEU ASP GLY GLU VAL ILE THR PHE ASP ASN LEU LYS SEQRES 6 A 131 THR LEU LEU SER LEU ARG GLU VAL ARG THR ILE LYS VAL SEQRES 7 A 131 PHE THR THR VAL ASP ASN ILE ASN LEU HIS THR GLN VAL SEQRES 8 A 131 VAL ASP MET SER MET THR TYR GLY GLN GLN PHE GLY PRO SEQRES 9 A 131 THR TYR LEU ASP GLY ALA ASP VAL THR LYS ILE LYS PRO SEQRES 10 A 131 HIS ASN SER HIS GLU GLY LYS THR PHE TYR VAL LEU PRO SEQRES 11 A 131 ASN SEQRES 1 B 131 SER ASN ALA THR PRO GLU GLU HIS PHE ILE GLU THR ILE SEQRES 2 B 131 SER LEU ALA GLY SER TYR LYS ASP TRP SER TYR SER GLY SEQRES 3 B 131 GLN SER THR GLN LEU GLY ILE GLU PHE LEU LYS ARG GLY SEQRES 4 B 131 ASP LYS SER VAL TYR TYR THR SER ASN PRO THR THR PHE SEQRES 5 B 131 HIS LEU ASP GLY GLU VAL ILE THR PHE ASP ASN LEU LYS SEQRES 6 B 131 THR LEU LEU SER LEU ARG GLU VAL ARG THR ILE LYS VAL SEQRES 7 B 131 PHE THR THR VAL ASP ASN ILE ASN LEU HIS THR GLN VAL SEQRES 8 B 131 VAL ASP MET SER MET THR TYR GLY GLN GLN PHE GLY PRO SEQRES 9 B 131 THR TYR LEU ASP GLY ALA ASP VAL THR LYS ILE LYS PRO SEQRES 10 B 131 HIS ASN SER HIS GLU GLY LYS THR PHE TYR VAL LEU PRO SEQRES 11 B 131 ASN SEQRES 1 C 131 SER ASN ALA THR PRO GLU GLU HIS PHE ILE GLU THR ILE SEQRES 2 C 131 SER LEU ALA GLY SER TYR LYS ASP TRP SER TYR SER GLY SEQRES 3 C 131 GLN SER THR GLN LEU GLY ILE GLU PHE LEU LYS ARG GLY SEQRES 4 C 131 ASP LYS SER VAL TYR TYR THR SER ASN PRO THR THR PHE SEQRES 5 C 131 HIS LEU ASP GLY GLU VAL ILE THR PHE ASP ASN LEU LYS SEQRES 6 C 131 THR LEU LEU SER LEU ARG GLU VAL ARG THR ILE LYS VAL SEQRES 7 C 131 PHE THR THR VAL ASP ASN ILE ASN LEU HIS THR GLN VAL SEQRES 8 C 131 VAL ASP MET SER MET THR TYR GLY GLN GLN PHE GLY PRO SEQRES 9 C 131 THR TYR LEU ASP GLY ALA ASP VAL THR LYS ILE LYS PRO SEQRES 10 C 131 HIS ASN SER HIS GLU GLY LYS THR PHE TYR VAL LEU PRO SEQRES 11 C 131 ASN SEQRES 1 D 131 SER ASN ALA THR PRO GLU GLU HIS PHE ILE GLU THR ILE SEQRES 2 D 131 SER LEU ALA GLY SER TYR LYS ASP TRP SER TYR SER GLY SEQRES 3 D 131 GLN SER THR GLN LEU GLY ILE GLU PHE LEU LYS ARG GLY SEQRES 4 D 131 ASP LYS SER VAL TYR TYR THR SER ASN PRO THR THR PHE SEQRES 5 D 131 HIS LEU ASP GLY GLU VAL ILE THR PHE ASP ASN LEU LYS SEQRES 6 D 131 THR LEU LEU SER LEU ARG GLU VAL ARG THR ILE LYS VAL SEQRES 7 D 131 PHE THR THR VAL ASP ASN ILE ASN LEU HIS THR GLN VAL SEQRES 8 D 131 VAL ASP MET SER MET THR TYR GLY GLN GLN PHE GLY PRO SEQRES 9 D 131 THR TYR LEU ASP GLY ALA ASP VAL THR LYS ILE LYS PRO SEQRES 10 D 131 HIS ASN SER HIS GLU GLY LYS THR PHE TYR VAL LEU PRO SEQRES 11 D 131 ASN SEQRES 1 E 131 SER ASN ALA THR PRO GLU GLU HIS PHE ILE GLU THR ILE SEQRES 2 E 131 SER LEU ALA GLY SER TYR LYS ASP TRP SER TYR SER GLY SEQRES 3 E 131 GLN SER THR GLN LEU GLY ILE GLU PHE LEU LYS ARG GLY SEQRES 4 E 131 ASP LYS SER VAL TYR TYR THR SER ASN PRO THR THR PHE SEQRES 5 E 131 HIS LEU ASP GLY GLU VAL ILE THR PHE ASP ASN LEU LYS SEQRES 6 E 131 THR LEU LEU SER LEU ARG GLU VAL ARG THR ILE LYS VAL SEQRES 7 E 131 PHE THR THR VAL ASP ASN ILE ASN LEU HIS THR GLN VAL SEQRES 8 E 131 VAL ASP MET SER MET THR TYR GLY GLN GLN PHE GLY PRO SEQRES 9 E 131 THR TYR LEU ASP GLY ALA ASP VAL THR LYS ILE LYS PRO SEQRES 10 E 131 HIS ASN SER HIS GLU GLY LYS THR PHE TYR VAL LEU PRO SEQRES 11 E 131 ASN SEQRES 1 F 131 SER ASN ALA THR PRO GLU GLU HIS PHE ILE GLU THR ILE SEQRES 2 F 131 SER LEU ALA GLY SER TYR LYS ASP TRP SER TYR SER GLY SEQRES 3 F 131 GLN SER THR GLN LEU GLY ILE GLU PHE LEU LYS ARG GLY SEQRES 4 F 131 ASP LYS SER VAL TYR TYR THR SER ASN PRO THR THR PHE SEQRES 5 F 131 HIS LEU ASP GLY GLU VAL ILE THR PHE ASP ASN LEU LYS SEQRES 6 F 131 THR LEU LEU SER LEU ARG GLU VAL ARG THR ILE LYS VAL SEQRES 7 F 131 PHE THR THR VAL ASP ASN ILE ASN LEU HIS THR GLN VAL SEQRES 8 F 131 VAL ASP MET SER MET THR TYR GLY GLN GLN PHE GLY PRO SEQRES 9 F 131 THR TYR LEU ASP GLY ALA ASP VAL THR LYS ILE LYS PRO SEQRES 10 F 131 HIS ASN SER HIS GLU GLY LYS THR PHE TYR VAL LEU PRO SEQRES 11 F 131 ASN HET CL A 901 1 HET P6G A 902 19 HET EDO A 903 4 HET CL A 904 1 HET IOD B 901 1 HET P6G B 902 19 HET IOD C 901 1 HET IOD C 902 1 HET P6G C 903 19 HET CL E 901 1 HET CL E 902 1 HET EDO E 903 4 HET CL F 901 1 HET CL F 902 1 HETNAM CL CHLORIDE ION HETNAM P6G HEXAETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM IOD IODIDE ION HETSYN P6G POLYETHYLENE GLYCOL PEG400 HETSYN EDO ETHYLENE GLYCOL FORMUL 7 CL 6(CL 1-) FORMUL 8 P6G 3(C12 H26 O7) FORMUL 9 EDO 2(C2 H6 O2) FORMUL 11 IOD 3(I 1-) FORMUL 21 HOH *880(H2 O) HELIX 1 AA1 THR A 678 GLY A 691 1 14 HELIX 2 AA2 THR A 734 LEU A 744 1 11 HELIX 3 AA3 THR A 771 GLY A 777 1 7 HELIX 4 AA4 HIS A 792 GLU A 796 5 5 HELIX 5 AA5 THR B 678 GLY B 691 1 14 HELIX 6 AA6 THR B 734 LEU B 744 1 11 HELIX 7 AA7 THR B 771 GLY B 777 1 7 HELIX 8 AA8 HIS B 792 GLU B 796 5 5 HELIX 9 AA9 THR C 678 GLY C 691 1 14 HELIX 10 AB1 THR C 734 LEU C 744 1 11 HELIX 11 AB2 THR C 771 GLY C 777 1 7 HELIX 12 AB3 HIS C 792 GLU C 796 5 5 HELIX 13 AB4 THR D 678 GLY D 691 1 14 HELIX 14 AB5 THR D 734 LEU D 744 1 11 HELIX 15 AB6 THR D 771 GLY D 777 1 7 HELIX 16 AB7 HIS D 792 GLU D 796 5 5 HELIX 17 AB8 THR E 678 GLY E 691 1 14 HELIX 18 AB9 THR E 734 LEU E 744 1 11 HELIX 19 AC1 THR E 771 GLY E 777 1 7 HELIX 20 AC2 HIS E 792 GLU E 796 5 5 HELIX 21 AC3 THR F 678 GLY F 691 1 14 HELIX 22 AC4 THR F 734 LEU F 744 1 11 HELIX 23 AC5 THR F 771 GLY F 777 1 7 HELIX 24 AC6 HIS F 792 GLU F 796 5 5 SHEET 1 AA1 4 SER A 692 TYR A 693 0 SHEET 2 AA1 4 TRP A 696 TYR A 698 -1 O TRP A 696 N TYR A 693 SHEET 3 AA1 4 GLY A 706 ARG A 712 -1 O LYS A 711 N SER A 697 SHEET 4 AA1 4 SER A 702 THR A 703 -1 N THR A 703 O GLY A 706 SHEET 1 AA2 6 SER A 692 TYR A 693 0 SHEET 2 AA2 6 TRP A 696 TYR A 698 -1 O TRP A 696 N TYR A 693 SHEET 3 AA2 6 GLY A 706 ARG A 712 -1 O LYS A 711 N SER A 697 SHEET 4 AA2 6 LYS A 715 THR A 720 -1 O VAL A 717 N LEU A 710 SHEET 5 AA2 6 THR A 725 LEU A 728 -1 O HIS A 727 N TYR A 718 SHEET 6 AA2 6 GLU A 731 ILE A 733 -1 O GLU A 731 N LEU A 728 SHEET 1 AA3 5 HIS A 762 ASP A 767 0 SHEET 2 AA3 5 THR A 749 THR A 755 -1 N VAL A 752 O GLN A 764 SHEET 3 AA3 5 THR A 799 VAL A 802 1 O PHE A 800 N PHE A 753 SHEET 4 AA3 5 THR A 779 LEU A 781 -1 N TYR A 780 O TYR A 801 SHEET 5 AA3 5 ALA A 784 ASP A 785 -1 O ALA A 784 N LEU A 781 SHEET 1 AA4 4 SER B 692 TYR B 693 0 SHEET 2 AA4 4 TRP B 696 TYR B 698 -1 O TRP B 696 N TYR B 693 SHEET 3 AA4 4 GLY B 706 ARG B 712 -1 O LYS B 711 N SER B 697 SHEET 4 AA4 4 SER B 702 THR B 703 -1 N THR B 703 O GLY B 706 SHEET 1 AA5 6 SER B 692 TYR B 693 0 SHEET 2 AA5 6 TRP B 696 TYR B 698 -1 O TRP B 696 N TYR B 693 SHEET 3 AA5 6 GLY B 706 ARG B 712 -1 O LYS B 711 N SER B 697 SHEET 4 AA5 6 LYS B 715 THR B 720 -1 O VAL B 717 N LEU B 710 SHEET 5 AA5 6 THR B 725 LEU B 728 -1 O HIS B 727 N TYR B 718 SHEET 6 AA5 6 GLU B 731 ILE B 733 -1 O GLU B 731 N LEU B 728 SHEET 1 AA6 5 HIS B 762 ASP B 767 0 SHEET 2 AA6 5 THR B 749 THR B 755 -1 N VAL B 752 O GLN B 764 SHEET 3 AA6 5 THR B 799 VAL B 802 1 O PHE B 800 N PHE B 753 SHEET 4 AA6 5 THR B 779 LEU B 781 -1 N TYR B 780 O TYR B 801 SHEET 5 AA6 5 ALA B 784 ASP B 785 -1 O ALA B 784 N LEU B 781 SHEET 1 AA7 4 SER C 692 TYR C 693 0 SHEET 2 AA7 4 TRP C 696 TYR C 698 -1 O TRP C 696 N TYR C 693 SHEET 3 AA7 4 GLY C 706 ARG C 712 -1 O LYS C 711 N SER C 697 SHEET 4 AA7 4 SER C 702 THR C 703 -1 N THR C 703 O GLY C 706 SHEET 1 AA8 6 SER C 692 TYR C 693 0 SHEET 2 AA8 6 TRP C 696 TYR C 698 -1 O TRP C 696 N TYR C 693 SHEET 3 AA8 6 GLY C 706 ARG C 712 -1 O LYS C 711 N SER C 697 SHEET 4 AA8 6 LYS C 715 THR C 720 -1 O TYR C 719 N ILE C 707 SHEET 5 AA8 6 THR C 725 LEU C 728 -1 O HIS C 727 N TYR C 718 SHEET 6 AA8 6 GLU C 731 ILE C 733 -1 O GLU C 731 N LEU C 728 SHEET 1 AA9 5 HIS C 762 ASP C 767 0 SHEET 2 AA9 5 THR C 749 THR C 755 -1 N VAL C 752 O GLN C 764 SHEET 3 AA9 5 THR C 799 VAL C 802 1 O PHE C 800 N PHE C 753 SHEET 4 AA9 5 THR C 779 LEU C 781 -1 N TYR C 780 O TYR C 801 SHEET 5 AA9 5 ALA C 784 ASP C 785 -1 O ALA C 784 N LEU C 781 SHEET 1 AB1 4 SER D 692 TYR D 693 0 SHEET 2 AB1 4 TRP D 696 TYR D 698 -1 O TRP D 696 N TYR D 693 SHEET 3 AB1 4 GLY D 706 ARG D 712 -1 O LYS D 711 N SER D 697 SHEET 4 AB1 4 SER D 702 THR D 703 -1 N THR D 703 O GLY D 706 SHEET 1 AB2 6 SER D 692 TYR D 693 0 SHEET 2 AB2 6 TRP D 696 TYR D 698 -1 O TRP D 696 N TYR D 693 SHEET 3 AB2 6 GLY D 706 ARG D 712 -1 O LYS D 711 N SER D 697 SHEET 4 AB2 6 LYS D 715 THR D 720 -1 O VAL D 717 N PHE D 709 SHEET 5 AB2 6 THR D 725 LEU D 728 -1 O HIS D 727 N TYR D 718 SHEET 6 AB2 6 GLU D 731 ILE D 733 -1 O GLU D 731 N LEU D 728 SHEET 1 AB3 5 HIS D 762 ASP D 767 0 SHEET 2 AB3 5 THR D 749 THR D 755 -1 N VAL D 752 O GLN D 764 SHEET 3 AB3 5 THR D 799 VAL D 802 1 O PHE D 800 N PHE D 753 SHEET 4 AB3 5 THR D 779 LEU D 781 -1 N TYR D 780 O TYR D 801 SHEET 5 AB3 5 ALA D 784 ASP D 785 -1 O ALA D 784 N LEU D 781 SHEET 1 AB4 6 SER E 692 TYR E 693 0 SHEET 2 AB4 6 TRP E 696 THR E 703 -1 O TRP E 696 N TYR E 693 SHEET 3 AB4 6 GLY E 706 ARG E 712 -1 O GLU E 708 N GLN E 701 SHEET 4 AB4 6 LYS E 715 THR E 720 -1 O VAL E 717 N LEU E 710 SHEET 5 AB4 6 THR E 725 LEU E 728 -1 O HIS E 727 N TYR E 718 SHEET 6 AB4 6 GLU E 731 ILE E 733 -1 O GLU E 731 N LEU E 728 SHEET 1 AB5 5 HIS E 762 ASP E 767 0 SHEET 2 AB5 5 THR E 749 THR E 755 -1 N VAL E 752 O GLN E 764 SHEET 3 AB5 5 THR E 799 VAL E 802 1 O PHE E 800 N PHE E 753 SHEET 4 AB5 5 THR E 779 LEU E 781 -1 N TYR E 780 O TYR E 801 SHEET 5 AB5 5 ALA E 784 ASP E 785 -1 O ALA E 784 N LEU E 781 SHEET 1 AB6 6 SER F 692 TYR F 693 0 SHEET 2 AB6 6 TRP F 696 THR F 703 -1 O TRP F 696 N TYR F 693 SHEET 3 AB6 6 GLY F 706 ARG F 712 -1 O GLU F 708 N GLY F 700 SHEET 4 AB6 6 LYS F 715 THR F 720 -1 O VAL F 717 N LEU F 710 SHEET 5 AB6 6 THR F 725 LEU F 728 -1 O HIS F 727 N TYR F 718 SHEET 6 AB6 6 GLU F 731 ILE F 733 -1 O GLU F 731 N LEU F 728 SHEET 1 AB7 5 HIS F 762 ASP F 767 0 SHEET 2 AB7 5 THR F 749 THR F 755 -1 N VAL F 752 O GLN F 764 SHEET 3 AB7 5 THR F 799 VAL F 802 1 O PHE F 800 N PHE F 753 SHEET 4 AB7 5 THR F 779 LEU F 781 -1 N TYR F 780 O TYR F 801 SHEET 5 AB7 5 ALA F 784 ASP F 785 -1 O ALA F 784 N LEU F 781 CISPEP 1 ASN A 722 PRO A 723 0 -0.68 CISPEP 2 ASN B 722 PRO B 723 0 -7.38 CISPEP 3 ASN C 722 PRO C 723 0 1.83 CISPEP 4 ASN D 722 PRO D 723 0 -6.17 CISPEP 5 ASN E 722 PRO E 723 0 -0.63 CISPEP 6 ASN F 722 PRO F 723 0 -1.26 CISPEP 7 ASN F 722 PRO F 723 0 -0.49 CRYST1 30.173 113.693 109.688 90.00 93.02 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033142 0.000000 0.001749 0.00000 SCALE2 0.000000 0.008796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009129 0.00000