HEADER VIRUS LIKE PARTICLE 16-JAN-22 7TJG TITLE BACTERIOPHAGE Q BETA CAPSID PROTEIN, A38K/A40C/D102C IN T1 SYMMETRY COMPND MOL_ID: 1; COMPND 2 MOLECULE: MINOR CAPSID PROTEIN A1; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: A1 READ-THROUGH PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTERIOPHAGE SP.; SOURCE 3 ORGANISM_TAXID: 38018; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIOPHAGE Q BETA CAPSID, VIRUS LIKE PARTICLE, T1 SYMMETRY EXPDTA X-RAY DIFFRACTION AUTHOR X.JIN REVDAT 2 25-OCT-23 7TJG 1 REMARK REVDAT 1 25-JAN-23 7TJG 0 JRNL AUTH V.SHAW,S.SUNGSUWAN,H.MCFALL-BOEGEMAN,X.HUANG,X.JIN JRNL TITL ALTERNATIVE ASSEMBLY OF Q BETA VIRUS-LIKE PARTICLES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.SUNGSUWAN,X.WU,V.SHAW,H.MCFALL-BOEGEMAN, REMARK 1 AUTH 2 Z.RASHIDIJAHANABAD,Z.TAN,S.LANG,S.TAHMASEBI NICK,P.LIN, REMARK 1 AUTH 3 Z.YIN,S.RAMADAN,X.JIN,X.HUANG REMARK 1 TITL STRUCTURE GUIDED DESIGN OF BACTERIOPHAGE Q BETA MUTANTS AS REMARK 1 TITL 2 NEXT GENERATION CARRIERS FOR CONJUGATE VACCINES REMARK 1 REF ACS CHEMICAL BIOLOGY 2022 REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 10704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.3000 - 6.1845 0.97 2523 143 0.1960 0.2833 REMARK 3 2 6.1845 - 4.9146 1.00 2579 112 0.2183 0.2726 REMARK 3 3 4.9146 - 4.2951 1.00 2538 136 0.2106 0.2457 REMARK 3 4 4.2951 - 3.9031 1.00 2541 132 0.2808 0.3526 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 120.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5054 REMARK 3 ANGLE : 0.728 6883 REMARK 3 CHIRALITY : 0.046 830 REMARK 3 PLANARITY : 0.008 905 REMARK 3 DIHEDRAL : 2.812 3145 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10727 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 30.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1QBE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, L-PROLINE, HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 95.84500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 95.84500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 95.84500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 95.84500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 95.84500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 95.84500 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 95.84500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 95.84500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 95.84500 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 95.84500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 95.84500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 95.84500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 95.84500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 95.84500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 95.84500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 95.84500 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 95.84500 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 95.84500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 95.84500 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 95.84500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 95.84500 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 95.84500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 95.84500 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 95.84500 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 95.84500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 95.84500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 95.84500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 95.84500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 95.84500 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 95.84500 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 95.84500 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 95.84500 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 95.84500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 95.84500 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 95.84500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 95.84500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 60-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 60-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 306910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 313100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2229.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR B 132 O CG CZ REMARK 480 TYR D 132 CA C REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS B 74 ND2 ASN B 77 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG E 105 O ASP E 126 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 5 82.09 -47.51 REMARK 500 ASN A 10 76.63 43.50 REMARK 500 VAL A 26 -155.53 -149.26 REMARK 500 ASN A 27 70.61 16.84 REMARK 500 THR A 29 12.39 -171.13 REMARK 500 ASN A 30 29.31 -164.66 REMARK 500 PRO A 42 -76.32 -61.64 REMARK 500 ALA A 43 15.75 -58.64 REMARK 500 SER A 56 -142.15 -130.79 REMARK 500 CYS A 74 90.70 -160.83 REMARK 500 THR A 75 -71.42 -5.66 REMARK 500 ALA A 76 -157.09 -148.23 REMARK 500 ASN A 77 -113.74 -178.14 REMARK 500 CYS A 80 -78.55 -106.39 REMARK 500 ALA A 88 76.66 -165.55 REMARK 500 GLN A 98 18.03 -62.89 REMARK 500 LEU A 116 23.15 -73.99 REMARK 500 ALA A 117 25.73 -143.73 REMARK 500 THR B 5 90.88 -64.75 REMARK 500 ARG B 24 48.83 -73.57 REMARK 500 ASN B 27 77.99 52.39 REMARK 500 THR B 29 -23.62 65.97 REMARK 500 LYS B 38 84.07 -57.42 REMARK 500 PRO B 42 -95.06 -65.49 REMARK 500 ALA B 43 -11.81 -37.70 REMARK 500 SER B 56 -156.38 -74.11 REMARK 500 ASN B 77 -72.86 -98.67 REMARK 500 SER B 79 -144.13 177.42 REMARK 500 GLN B 87 -157.75 -102.39 REMARK 500 ALA B 88 76.50 -168.55 REMARK 500 ALA B 90 96.84 -164.80 REMARK 500 ALA B 113 -71.40 -58.43 REMARK 500 PRO B 130 -152.89 -69.69 REMARK 500 LEU C 3 95.72 -62.36 REMARK 500 THR C 5 97.10 -56.57 REMARK 500 PRO C 23 90.74 -59.20 REMARK 500 ASN C 27 -74.44 97.64 REMARK 500 PRO C 28 79.40 22.45 REMARK 500 THR C 29 -62.35 70.00 REMARK 500 ASN C 30 43.46 -108.56 REMARK 500 CYS C 40 -74.65 -62.08 REMARK 500 ALA C 43 27.17 -62.20 REMARK 500 PRO C 71 -158.07 -92.30 REMARK 500 THR C 75 -144.02 -87.13 REMARK 500 ALA C 76 80.11 -54.04 REMARK 500 SER C 79 -149.54 -82.91 REMARK 500 CYS C 80 -35.03 -131.23 REMARK 500 ARG C 86 143.19 -174.47 REMARK 500 ALA C 90 130.01 -171.54 REMARK 500 ILE C 125 -58.01 -133.75 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7TJD RELATED DB: PDB REMARK 900 WILD TYPE IN T=1 SYMMETRY DBREF 7TJG A 1 132 UNP Q8LTE1 A1_BPQBE 2 133 DBREF 7TJG B 1 132 UNP Q8LTE1 A1_BPQBE 2 133 DBREF 7TJG C 1 132 UNP Q8LTE1 A1_BPQBE 2 133 DBREF 7TJG D 1 132 UNP Q8LTE1 A1_BPQBE 2 133 DBREF 7TJG E 1 132 UNP Q8LTE1 A1_BPQBE 2 133 SEQADV 7TJG LYS A 38 UNP Q8LTE1 ALA 39 ENGINEERED MUTATION SEQADV 7TJG CYS A 40 UNP Q8LTE1 ALA 41 ENGINEERED MUTATION SEQADV 7TJG CYS A 102 UNP Q8LTE1 ASP 103 ENGINEERED MUTATION SEQADV 7TJG LYS B 38 UNP Q8LTE1 ALA 39 ENGINEERED MUTATION SEQADV 7TJG CYS B 40 UNP Q8LTE1 ALA 41 ENGINEERED MUTATION SEQADV 7TJG CYS B 102 UNP Q8LTE1 ASP 103 ENGINEERED MUTATION SEQADV 7TJG LYS C 38 UNP Q8LTE1 ALA 39 ENGINEERED MUTATION SEQADV 7TJG CYS C 40 UNP Q8LTE1 ALA 41 ENGINEERED MUTATION SEQADV 7TJG CYS C 102 UNP Q8LTE1 ASP 103 ENGINEERED MUTATION SEQADV 7TJG LYS D 38 UNP Q8LTE1 ALA 39 ENGINEERED MUTATION SEQADV 7TJG CYS D 40 UNP Q8LTE1 ALA 41 ENGINEERED MUTATION SEQADV 7TJG CYS D 102 UNP Q8LTE1 ASP 103 ENGINEERED MUTATION SEQADV 7TJG LYS E 38 UNP Q8LTE1 ALA 39 ENGINEERED MUTATION SEQADV 7TJG CYS E 40 UNP Q8LTE1 ALA 41 ENGINEERED MUTATION SEQADV 7TJG CYS E 102 UNP Q8LTE1 ASP 103 ENGINEERED MUTATION SEQRES 1 A 132 ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY LYS SEQRES 2 A 132 ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY VAL SEQRES 3 A 132 ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN LYS GLY SEQRES 4 A 132 CYS VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER VAL SEQRES 5 A 132 SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL GLN SEQRES 6 A 132 VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN GLY SEQRES 7 A 132 SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA ASP SEQRES 8 A 132 VAL THR PHE SER PHE THR GLN TYR SER THR CYS GLU GLU SEQRES 9 A 132 ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU ALA SEQRES 10 A 132 SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN PRO SEQRES 11 A 132 ALA TYR SEQRES 1 B 132 ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY LYS SEQRES 2 B 132 ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY VAL SEQRES 3 B 132 ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN LYS GLY SEQRES 4 B 132 CYS VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER VAL SEQRES 5 B 132 SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL GLN SEQRES 6 B 132 VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN GLY SEQRES 7 B 132 SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA ASP SEQRES 8 B 132 VAL THR PHE SER PHE THR GLN TYR SER THR CYS GLU GLU SEQRES 9 B 132 ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU ALA SEQRES 10 B 132 SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN PRO SEQRES 11 B 132 ALA TYR SEQRES 1 C 132 ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY LYS SEQRES 2 C 132 ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY VAL SEQRES 3 C 132 ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN LYS GLY SEQRES 4 C 132 CYS VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER VAL SEQRES 5 C 132 SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL GLN SEQRES 6 C 132 VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN GLY SEQRES 7 C 132 SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA ASP SEQRES 8 C 132 VAL THR PHE SER PHE THR GLN TYR SER THR CYS GLU GLU SEQRES 9 C 132 ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU ALA SEQRES 10 C 132 SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN PRO SEQRES 11 C 132 ALA TYR SEQRES 1 D 132 ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY LYS SEQRES 2 D 132 ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY VAL SEQRES 3 D 132 ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN LYS GLY SEQRES 4 D 132 CYS VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER VAL SEQRES 5 D 132 SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL GLN SEQRES 6 D 132 VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN GLY SEQRES 7 D 132 SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA ASP SEQRES 8 D 132 VAL THR PHE SER PHE THR GLN TYR SER THR CYS GLU GLU SEQRES 9 D 132 ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU ALA SEQRES 10 D 132 SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN PRO SEQRES 11 D 132 ALA TYR SEQRES 1 E 132 ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY LYS SEQRES 2 E 132 ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY VAL SEQRES 3 E 132 ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN LYS GLY SEQRES 4 E 132 CYS VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER VAL SEQRES 5 E 132 SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL GLN SEQRES 6 E 132 VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN GLY SEQRES 7 E 132 SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA ASP SEQRES 8 E 132 VAL THR PHE SER PHE THR GLN TYR SER THR CYS GLU GLU SEQRES 9 E 132 ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU ALA SEQRES 10 E 132 SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN PRO SEQRES 11 E 132 ALA TYR HELIX 1 AA1 VAL A 41 GLU A 45 5 5 HELIX 2 AA2 THR A 101 LEU A 116 1 16 HELIX 3 AA3 SER A 118 ASP A 126 1 9 HELIX 4 AA4 THR B 101 LEU B 116 1 16 HELIX 5 AA5 SER B 118 ASP B 126 1 9 HELIX 6 AA6 THR C 101 LEU C 116 1 16 HELIX 7 AA7 SER C 118 ALA C 124 1 7 HELIX 8 AA8 VAL D 41 GLU D 45 5 5 HELIX 9 AA9 THR D 101 ALA D 117 1 17 HELIX 10 AB1 SER D 118 ILE D 125 1 8 HELIX 11 AB2 THR E 101 ALA E 117 1 17 HELIX 12 AB3 SER E 118 ASP E 126 1 9 SHEET 1 AA111 THR A 7 ILE A 11 0 SHEET 2 AA111 GLN A 17 PRO A 23 -1 O LEU A 19 N LEU A 8 SHEET 3 AA111 ALA A 33 GLN A 37 -1 O SER A 36 N ASN A 22 SHEET 4 AA111 ARG A 47 SER A 53 -1 O VAL A 48 N LEU A 35 SHEET 5 AA111 LYS A 63 GLN A 69 -1 O LYS A 67 N THR A 49 SHEET 6 AA111 ALA A 90 PHE A 94 -1 O PHE A 94 N VAL A 64 SHEET 7 AA111 TYR B 89 PHE B 94 -1 O THR B 93 N ASP A 91 SHEET 8 AA111 GLN B 65 GLN B 69 -1 N VAL B 66 O VAL B 92 SHEET 9 AA111 ARG B 47 SER B 51 -1 N ARG B 47 O GLN B 69 SHEET 10 AA111 ALA B 33 SER B 36 -1 N ALA B 33 O VAL B 50 SHEET 11 AA111 ASN B 22 VAL B 26 -1 O ASN B 22 N SER B 36 SHEET 1 AA2 2 THR B 7 ILE B 11 0 SHEET 2 AA2 2 GLN B 17 VAL B 20 -1 O LEU B 19 N LEU B 8 SHEET 1 AA3 2 THR B 72 CYS B 74 0 SHEET 2 AA3 2 SER B 83 ARG B 86 -1 O ARG B 86 N THR B 72 SHEET 1 AA4 2 THR C 7 ILE C 11 0 SHEET 2 AA4 2 GLN C 17 VAL C 20 -1 O GLN C 17 N ILE C 11 SHEET 1 AA5 9 ASN C 22 PRO C 23 0 SHEET 2 AA5 9 ALA C 33 SER C 36 -1 O SER C 36 N ASN C 22 SHEET 3 AA5 9 ARG C 47 SER C 53 -1 O VAL C 50 N ALA C 33 SHEET 4 AA5 9 LYS C 63 ASN C 70 -1 O GLN C 69 N ARG C 47 SHEET 5 AA5 9 ALA C 88 PHE C 94 -1 O PHE C 94 N VAL C 64 SHEET 6 AA5 9 ALA D 90 PHE D 94 -1 O THR D 93 N ASP C 91 SHEET 7 AA5 9 LYS D 63 GLN D 69 -1 N VAL D 64 O PHE D 94 SHEET 8 AA5 9 ARG D 47 SER D 53 -1 N ARG D 47 O GLN D 69 SHEET 9 AA5 9 ALA D 33 SER D 36 -1 N ALA D 33 O VAL D 50 SHEET 1 AA6 2 ALA C 73 CYS C 74 0 SHEET 2 AA6 2 SER C 83 VAL C 84 -1 O SER C 83 N CYS C 74 SHEET 1 AA7 2 VAL D 6 ILE D 11 0 SHEET 2 AA7 2 GLN D 17 LEU D 21 -1 O LEU D 21 N VAL D 6 SHEET 1 AA8 2 ALA D 73 CYS D 74 0 SHEET 2 AA8 2 SER D 83 VAL D 84 -1 O SER D 83 N CYS D 74 SHEET 1 AA9 5 ASN E 22 PRO E 23 0 SHEET 2 AA9 5 LEU E 35 SER E 36 -1 O SER E 36 N ASN E 22 SHEET 3 AA9 5 ARG E 47 SER E 53 -1 O VAL E 48 N LEU E 35 SHEET 4 AA9 5 TYR E 62 THR E 72 -1 O GLN E 69 N ARG E 47 SHEET 5 AA9 5 ARG E 86 PHE E 96 -1 O ALA E 90 N ILE E 68 SSBOND 1 CYS A 40 CYS C 102 1555 1555 2.04 SSBOND 2 CYS A 74 CYS B 80 1555 9555 2.06 SSBOND 3 CYS A 80 CYS D 74 1555 1555 2.03 SSBOND 4 CYS A 102 CYS E 40 1555 1555 2.03 SSBOND 5 CYS B 40 CYS B 102 1555 5555 2.03 SSBOND 6 CYS B 74 CYS E 80 1555 1555 2.04 SSBOND 7 CYS C 74 CYS D 80 1555 7555 2.04 SSBOND 8 CYS D 40 CYS D 102 1555 10555 2.05 CRYST1 191.690 191.690 191.690 90.00 90.00 90.00 I 2 3 120 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005217 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005217 0.00000