HEADER NUCLEAR PROTEIN 20-JAN-22 7TMX TITLE STRUCTURE OF MOUSE IMPORTIN ALPHA NEIL1 NLS PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMPORTIN SUBUNIT ALPHA-1; COMPND 3 CHAIN: I; COMPND 4 SYNONYM: IMPORTIN ALPHA P1,KARYOPHERIN SUBUNIT ALPHA-2,PENDULIN,PORE COMPND 5 TARGETING COMPLEX 58 KDA SUBUNIT,PTAC58,RAG COHORT PROTEIN 1,SRP1- COMPND 6 ALPHA; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR LOCALIZATION SIGNAL FROM ENDONUCLEASE 8-LIKE 1; COMPND 10 CHAIN: A, B; COMPND 11 FRAGMENT: RESIDUES 359-378; COMPND 12 SYNONYM: DNA GLYCOSYLASE/AP LYASE NEIL1,DNA-(APURINIC OR APYRIMIDINIC COMPND 13 SITE) LYASE NEIL1,ENDONUCLEASE VIII-LIKE 1,FPG1,NEI HOMOLOG 1,NEH1, COMPND 14 NEI-LIKE PROTEIN 1; COMPND 15 EC: 3.2.2.-,4.2.99.18; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: KPNA2, RCH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS IMPORTIN-ALPHA, COMPLEX, BER, NLS, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.R.MORAES,H.C.DE OLIVEIRA,M.R.M.FONTES REVDAT 2 27-DEC-23 7TMX 1 JRNL REVDAT 1 02-AUG-23 7TMX 0 JRNL AUTH I.R.MORAES,H.C.DE OLIVEIRA,M.R.M.FONTES JRNL TITL STRUCTURAL BASIS OF NUCLEAR TRANSPORT FOR NEIL DNA JRNL TITL 2 GLYCOSYLASES MEDIATED BY IMPORTIN-ALPHA. JRNL REF BIOCHIM BIOPHYS ACTA V.1872 40974 2023 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1878-1454 JRNL PMID 38065227 JRNL DOI 10.1016/J.BBAPAP.2023.140974 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 58874 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1700 - 6.3400 0.98 2697 142 0.1473 0.2272 REMARK 3 2 6.3400 - 5.0400 1.00 2721 150 0.1913 0.1937 REMARK 3 3 5.0400 - 4.4000 1.00 2751 146 0.1596 0.1767 REMARK 3 4 4.4000 - 4.0000 0.99 2736 145 0.1757 0.2226 REMARK 3 5 4.0000 - 3.7100 0.85 2321 135 0.2823 0.2849 REMARK 3 6 3.7100 - 3.4900 0.84 2334 116 0.3268 0.3941 REMARK 3 7 3.4900 - 3.3200 0.99 2709 140 0.2354 0.2852 REMARK 3 8 3.3200 - 3.1700 0.99 2749 140 0.2274 0.2340 REMARK 3 9 3.1700 - 3.0500 0.99 2708 140 0.2239 0.2434 REMARK 3 10 3.0500 - 2.9500 0.99 2705 146 0.2404 0.2546 REMARK 3 11 2.9500 - 2.8500 0.98 2720 146 0.2287 0.2756 REMARK 3 12 2.8500 - 2.7700 0.99 2683 144 0.2245 0.2579 REMARK 3 13 2.7700 - 2.7000 0.99 2701 142 0.2290 0.2442 REMARK 3 14 2.7000 - 2.6300 0.98 2710 145 0.2309 0.2363 REMARK 3 15 2.6300 - 2.5700 0.97 2690 141 0.2401 0.2733 REMARK 3 16 2.5700 - 2.5200 0.99 2705 144 0.2489 0.2895 REMARK 3 17 2.5200 - 2.4700 0.97 2709 137 0.2463 0.2949 REMARK 3 18 2.4700 - 2.4200 0.98 2701 138 0.2519 0.3149 REMARK 3 19 2.4200 - 2.3800 0.98 2647 136 0.2693 0.2709 REMARK 3 20 2.3800 - 2.3400 0.97 2721 145 0.2942 0.3533 REMARK 3 21 2.3400 - 2.3000 0.93 2510 128 0.3047 0.3458 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3312 REMARK 3 ANGLE : 0.740 4523 REMARK 3 CHIRALITY : 0.042 554 REMARK 3 PLANARITY : 0.006 581 REMARK 3 DIHEDRAL : 4.826 455 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.0113 92.9637 65.6663 REMARK 3 T TENSOR REMARK 3 T11: 0.2810 T22: 0.2555 REMARK 3 T33: 0.3683 T12: 0.0209 REMARK 3 T13: 0.0256 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.8676 L22: 6.9385 REMARK 3 L33: 3.3189 L12: -0.1083 REMARK 3 L13: -0.9524 L23: 2.7870 REMARK 3 S TENSOR REMARK 3 S11: 0.2741 S12: -0.0149 S13: 0.3167 REMARK 3 S21: -0.1502 S22: -0.1221 S23: 0.0907 REMARK 3 S31: -0.4758 S32: -0.1993 S33: -0.1453 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 203 THROUGH 390 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2455 62.4166 55.3008 REMARK 3 T TENSOR REMARK 3 T11: 0.3116 T22: 0.2437 REMARK 3 T33: 0.5032 T12: -0.0088 REMARK 3 T13: 0.0072 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.8369 L22: 1.2936 REMARK 3 L33: 2.6554 L12: 1.3584 REMARK 3 L13: 2.1292 L23: 1.7113 REMARK 3 S TENSOR REMARK 3 S11: 0.2175 S12: 0.0745 S13: -0.3500 REMARK 3 S21: 0.2145 S22: 0.0022 S23: -0.1109 REMARK 3 S31: 0.2751 S32: 0.0408 S33: -0.2193 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 391 THROUGH 497 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1050 50.6028 24.2643 REMARK 3 T TENSOR REMARK 3 T11: 0.5422 T22: 0.7943 REMARK 3 T33: 0.7244 T12: 0.0059 REMARK 3 T13: 0.1079 T23: -0.2156 REMARK 3 L TENSOR REMARK 3 L11: 3.2785 L22: 3.3939 REMARK 3 L33: 7.6601 L12: -1.7107 REMARK 3 L13: -1.5017 L23: 0.8197 REMARK 3 S TENSOR REMARK 3 S11: 0.1810 S12: 0.9933 S13: -0.3174 REMARK 3 S21: -0.9399 S22: 0.0818 S23: -0.9513 REMARK 3 S31: 0.0425 S32: 0.7678 S33: -0.2355 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3493 86.3346 58.7299 REMARK 3 T TENSOR REMARK 3 T11: 0.5967 T22: 0.8958 REMARK 3 T33: 1.2975 T12: 0.1945 REMARK 3 T13: 0.0779 T23: 0.3190 REMARK 3 L TENSOR REMARK 3 L11: 6.5673 L22: 9.9457 REMARK 3 L33: 4.0248 L12: 1.3872 REMARK 3 L13: -3.1626 L23: 4.2505 REMARK 3 S TENSOR REMARK 3 S11: 0.5229 S12: 1.5184 S13: 0.2257 REMARK 3 S21: -0.7622 S22: -0.8756 S23: 0.3789 REMARK 3 S31: -0.7066 S32: -0.2634 S33: 0.3742 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 921 THROUGH 924 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0142 56.3206 40.5933 REMARK 3 T TENSOR REMARK 3 T11: 0.8453 T22: 1.1195 REMARK 3 T33: 1.1536 T12: 0.0446 REMARK 3 T13: 0.1951 T23: -0.2536 REMARK 3 L TENSOR REMARK 3 L11: 4.0911 L22: 2.0135 REMARK 3 L33: 2.9507 L12: 1.1162 REMARK 3 L13: 3.3092 L23: 0.2185 REMARK 3 S TENSOR REMARK 3 S11: 0.3297 S12: 1.7591 S13: -0.4324 REMARK 3 S21: -1.7842 S22: -0.0191 S23: -1.7634 REMARK 3 S31: -0.1361 S32: 0.8852 S33: -0.3234 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.45 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58874 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 39.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : 1.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3UL1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE BUFFER (PH 6.0), SODIUM REMARK 280 CITRATE AND DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.27050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.78450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.18900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.78450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.27050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.18900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN I -128 REMARK 465 GLN I -127 REMARK 465 VAL I 498 REMARK 465 GLU I 499 REMARK 465 GLU I 500 REMARK 465 GLU I 501 REMARK 465 GLU I 502 REMARK 465 ASP I 503 REMARK 465 GLN I 504 REMARK 465 ASN I 505 REMARK 465 VAL I 506 REMARK 465 VAL I 507 REMARK 465 PRO I 508 REMARK 465 GLU I 509 REMARK 465 THR I 510 REMARK 465 THR I 511 REMARK 465 SER I 512 REMARK 465 GLU I 513 REMARK 465 GLY I 514 REMARK 465 PHE I 515 REMARK 465 ALA I 516 REMARK 465 PHE I 517 REMARK 465 GLN I 518 REMARK 465 VAL I 519 REMARK 465 GLN I 520 REMARK 465 ASP I 521 REMARK 465 GLY I 522 REMARK 465 ALA I 523 REMARK 465 PRO I 524 REMARK 465 GLY I 525 REMARK 465 THR I 526 REMARK 465 PHE I 527 REMARK 465 ASN I 528 REMARK 465 PHE I 529 REMARK 465 ARG A 359 REMARK 465 ARG A 360 REMARK 465 LYS A 361 REMARK 465 GLY A 362 REMARK 465 ARG A 363 REMARK 465 CYS A 364 REMARK 465 ALA A 365 REMARK 465 ALA A 366 REMARK 465 SER A 367 REMARK 465 GLY A 368 REMARK 465 HIS A 369 REMARK 465 CYS A 370 REMARK 465 ARG A 371 REMARK 465 ARG B 359 REMARK 465 CYS B 364 REMARK 465 ALA B 365 REMARK 465 ALA B 366 REMARK 465 SER B 367 REMARK 465 GLY B 368 REMARK 465 HIS B 369 REMARK 465 CYS B 370 REMARK 465 ARG B 371 REMARK 465 PRO B 372 REMARK 465 ARG B 373 REMARK 465 LYS B 374 REMARK 465 VAL B 375 REMARK 465 LYS B 376 REMARK 465 ALA B 377 REMARK 465 ASP B 378 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU I 79 CG CD OE1 OE2 REMARK 470 LYS I 83 CG CD CE NZ REMARK 470 GLU I 107 CG CD OE1 OE2 REMARK 470 LYS I 108 CG CD CE NZ REMARK 470 ASP I 132 CG OD1 OD2 REMARK 470 GLU I 153 CG CD OE1 OE2 REMARK 470 LYS I 348 CG CD CE NZ REMARK 470 LYS I 395 CG CD CE NZ REMARK 470 LYS I 432 CG CD CE NZ REMARK 470 LYS I 435 CG CD CE NZ REMARK 470 GLU I 458 CG CD OE1 OE2 REMARK 470 LYS I 472 CG CD CE NZ REMARK 470 GLU I 474 CG CD OE1 OE2 REMARK 470 LEU I 476 CG CD1 CD2 REMARK 470 GLN I 477 CG CD OE1 NE2 REMARK 470 ARG I 478 CG CD NE CZ NH1 NH2 REMARK 470 ASN I 481 CG OD1 ND2 REMARK 470 GLU I 482 CG CD OE1 OE2 REMARK 470 TYR I 485 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS I 486 CG CD CE NZ REMARK 470 LEU I 489 CG CD1 CD2 REMARK 470 ILE I 492 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP I 333 O HOH I 601 1.95 REMARK 500 O THR I 311 O HOH I 602 2.01 REMARK 500 NH2 ARG A 373 O HOH A 401 2.03 REMARK 500 NH1 ARG I 258 O HOH I 603 2.10 REMARK 500 O LEU I 386 O HOH I 604 2.15 REMARK 500 OD2 ASP I 280 O HOH I 605 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH I 635 O HOH I 673 3646 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU I 266 CD GLU I 266 OE1 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN I 88 41.49 -86.19 REMARK 500 GLN I 109 106.99 65.96 REMARK 500 ASN I 239 155.77 84.88 REMARK 500 GLU I 456 33.96 -93.46 REMARK 500 GLU I 482 -54.05 57.25 REMARK 500 REMARK 500 REMARK: NULL DBREF 7TMX I -128 529 UNP P52293 IMA1_MOUSE 70 529 DBREF 7TMX A 359 378 UNP Q96FI4 NEIL1_HUMAN 359 378 DBREF 7TMX B 359 378 UNP Q96FI4 NEIL1_HUMAN 359 378 SEQADV 7TMX CYS A 364 UNP Q96FI4 GLN 364 CONFLICT SEQADV 7TMX CYS B 364 UNP Q96FI4 GLN 364 CONFLICT SEQRES 1 I 460 ASN GLN GLY THR VAL ASN TRP SER VAL GLU ASP ILE VAL SEQRES 2 I 460 LYS GLY ILE ASN SER ASN ASN LEU GLU SER GLN LEU GLN SEQRES 3 I 460 ALA THR GLN ALA ALA ARG LYS LEU LEU SER ARG GLU LYS SEQRES 4 I 460 GLN PRO PRO ILE ASP ASN ILE ILE ARG ALA GLY LEU ILE SEQRES 5 I 460 PRO LYS PHE VAL SER PHE LEU GLY LYS THR ASP CYS SER SEQRES 6 I 460 PRO ILE GLN PHE GLU SER ALA TRP ALA LEU THR ASN ILE SEQRES 7 I 460 ALA SER GLY THR SER GLU GLN THR LYS ALA VAL VAL ASP SEQRES 8 I 460 GLY GLY ALA ILE PRO ALA PHE ILE SER LEU LEU ALA SER SEQRES 9 I 460 PRO HIS ALA HIS ILE SER GLU GLN ALA VAL TRP ALA LEU SEQRES 10 I 460 GLY ASN ILE ALA GLY ASP GLY SER ALA PHE ARG ASP LEU SEQRES 11 I 460 VAL ILE LYS HIS GLY ALA ILE ASP PRO LEU LEU ALA LEU SEQRES 12 I 460 LEU ALA VAL PRO ASP LEU SER THR LEU ALA CYS GLY TYR SEQRES 13 I 460 LEU ARG ASN LEU THR TRP THR LEU SER ASN LEU CYS ARG SEQRES 14 I 460 ASN LYS ASN PRO ALA PRO PRO LEU ASP ALA VAL GLU GLN SEQRES 15 I 460 ILE LEU PRO THR LEU VAL ARG LEU LEU HIS HIS ASN ASP SEQRES 16 I 460 PRO GLU VAL LEU ALA ASP SER CYS TRP ALA ILE SER TYR SEQRES 17 I 460 LEU THR ASP GLY PRO ASN GLU ARG ILE GLU MET VAL VAL SEQRES 18 I 460 LYS LYS GLY VAL VAL PRO GLN LEU VAL LYS LEU LEU GLY SEQRES 19 I 460 ALA THR GLU LEU PRO ILE VAL THR PRO ALA LEU ARG ALA SEQRES 20 I 460 ILE GLY ASN ILE VAL THR GLY THR ASP GLU GLN THR GLN SEQRES 21 I 460 LYS VAL ILE ASP ALA GLY ALA LEU ALA VAL PHE PRO SER SEQRES 22 I 460 LEU LEU THR ASN PRO LYS THR ASN ILE GLN LYS GLU ALA SEQRES 23 I 460 THR TRP THR MET SER ASN ILE THR ALA GLY ARG GLN ASP SEQRES 24 I 460 GLN ILE GLN GLN VAL VAL ASN HIS GLY LEU VAL PRO PHE SEQRES 25 I 460 LEU VAL GLY VAL LEU SER LYS ALA ASP PHE LYS THR GLN SEQRES 26 I 460 LYS GLU ALA ALA TRP ALA ILE THR ASN TYR THR SER GLY SEQRES 27 I 460 GLY THR VAL GLU GLN ILE VAL TYR LEU VAL HIS CYS GLY SEQRES 28 I 460 ILE ILE GLU PRO LEU MET ASN LEU LEU SER ALA LYS ASP SEQRES 29 I 460 THR LYS ILE ILE GLN VAL ILE LEU ASP ALA ILE SER ASN SEQRES 30 I 460 ILE PHE GLN ALA ALA GLU LYS LEU GLY GLU THR GLU LYS SEQRES 31 I 460 LEU SER ILE MET ILE GLU GLU CYS GLY GLY LEU ASP LYS SEQRES 32 I 460 ILE GLU ALA LEU GLN ARG HIS GLU ASN GLU SER VAL TYR SEQRES 33 I 460 LYS ALA SER LEU ASN LEU ILE GLU LYS TYR PHE SER VAL SEQRES 34 I 460 GLU GLU GLU GLU ASP GLN ASN VAL VAL PRO GLU THR THR SEQRES 35 I 460 SER GLU GLY PHE ALA PHE GLN VAL GLN ASP GLY ALA PRO SEQRES 36 I 460 GLY THR PHE ASN PHE SEQRES 1 A 20 ARG ARG LYS GLY ARG CYS ALA ALA SER GLY HIS CYS ARG SEQRES 2 A 20 PRO ARG LYS VAL LYS ALA ASP SEQRES 1 B 20 ARG ARG LYS GLY ARG CYS ALA ALA SER GLY HIS CYS ARG SEQRES 2 B 20 PRO ARG LYS VAL LYS ALA ASP FORMUL 4 HOH *91(H2 O) HELIX 1 AA1 SER I 77 ASN I 86 1 10 HELIX 2 AA2 ASN I 89 SER I 105 1 17 HELIX 3 AA3 PRO I 111 ALA I 118 1 8 HELIX 4 AA4 LEU I 120 GLY I 129 1 10 HELIX 5 AA5 CYS I 133 SER I 149 1 17 HELIX 6 AA6 THR I 151 GLY I 161 1 11 HELIX 7 AA7 GLY I 162 LEU I 171 1 10 HELIX 8 AA8 HIS I 175 GLY I 191 1 17 HELIX 9 AA9 GLY I 193 HIS I 203 1 11 HELIX 10 AB1 ALA I 205 LEU I 213 1 9 HELIX 11 AB2 ASP I 217 LEU I 221 5 5 HELIX 12 AB3 ALA I 222 CYS I 237 1 16 HELIX 13 AB4 PRO I 245 LEU I 260 1 16 HELIX 14 AB5 ASP I 264 THR I 279 1 16 HELIX 15 AB6 PRO I 282 LYS I 292 1 11 HELIX 16 AB7 VAL I 294 GLY I 303 1 10 HELIX 17 AB8 GLU I 306 VAL I 321 1 16 HELIX 18 AB9 THR I 324 ALA I 334 1 11 HELIX 19 AC1 GLY I 335 ALA I 338 5 4 HELIX 20 AC2 VAL I 339 LEU I 344 1 6 HELIX 21 AC3 LYS I 348 THR I 363 1 16 HELIX 22 AC4 ARG I 366 HIS I 376 1 11 HELIX 23 AC5 LEU I 378 LYS I 388 1 11 HELIX 24 AC6 ASP I 390 GLY I 408 1 19 HELIX 25 AC7 THR I 409 CYS I 419 1 11 HELIX 26 AC8 ILE I 421 LEU I 428 1 8 HELIX 27 AC9 LEU I 429 ALA I 431 5 3 HELIX 28 AD1 ASP I 433 LEU I 454 1 22 HELIX 29 AD2 GLU I 456 CYS I 467 1 12 HELIX 30 AD3 GLY I 468 GLN I 477 1 10 HELIX 31 AD4 GLU I 482 PHE I 496 1 15 CISPEP 1 ASN I 241 PRO I 242 0 -0.69 CRYST1 78.541 90.378 99.569 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012732 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010043 0.00000