HEADER NUCLEAR PROTEIN 20-JAN-22 7TMY TITLE STRUCTURE OF MOUSE IMPORTIN ALPHA NEIL3 NLS PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMPORTIN SUBUNIT ALPHA-1; COMPND 3 CHAIN: I; COMPND 4 SYNONYM: IMPORTIN ALPHA P1,KARYOPHERIN SUBUNIT ALPHA-2,PENDULIN,PORE COMPND 5 TARGETING COMPLEX 58 KDA SUBUNIT,PTAC58,RAG COHORT PROTEIN 1,SRP1- COMPND 6 ALPHA; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR LOCALIZATION SIGNAL FROM ENDONUCLEASE 8-LIKE 3; COMPND 10 CHAIN: A; COMPND 11 FRAGMENT: RESIDUES 462-469; COMPND 12 SYNONYM: DNA GLYCOSYLASE FPG2,DNA GLYCOSYLASE/AP LYASE NEIL3, COMPND 13 ENDONUCLEASE VIII-LIKE 3,NEI-LIKE PROTEIN 3; COMPND 14 EC: 3.2.2.-,4.2.99.18; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: KPNA2, RCH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS IMPORTIN-ALPHA, COMPLEX, BER, NLS, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.R.MORAES,H.C.DE OLIVEIRA,M.R.M.FONTES REVDAT 2 27-DEC-23 7TMY 1 JRNL REVDAT 1 02-AUG-23 7TMY 0 JRNL AUTH I.R.MORAES,H.C.DE OLIVEIRA,M.R.M.FONTES JRNL TITL STRUCTURAL BASIS OF NUCLEAR TRANSPORT FOR NEIL DNA JRNL TITL 2 GLYCOSYLASES MEDIATED BY IMPORTIN-ALPHA. JRNL REF BIOCHIM BIOPHYS ACTA V.1872 40974 2023 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1878-1454 JRNL PMID 38065227 JRNL DOI 10.1016/J.BBAPAP.2023.140974 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 67874 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0300 - 6.3600 0.99 2683 138 0.1555 0.1867 REMARK 3 2 6.3600 - 5.0500 1.00 2705 143 0.1758 0.1705 REMARK 3 3 5.0500 - 4.4100 1.00 2701 144 0.1411 0.1581 REMARK 3 4 4.4100 - 4.0100 1.00 2717 139 0.1312 0.1794 REMARK 3 5 4.0100 - 3.7200 1.00 2670 140 0.1397 0.1868 REMARK 3 6 3.7200 - 3.5000 1.00 2736 146 0.1482 0.1793 REMARK 3 7 3.5000 - 3.3300 1.00 2704 141 0.1701 0.2028 REMARK 3 8 3.3300 - 3.1800 1.00 2685 145 0.1763 0.2181 REMARK 3 9 3.1800 - 3.0600 1.00 2709 142 0.1905 0.2131 REMARK 3 10 3.0600 - 2.9500 1.00 2731 140 0.1885 0.2114 REMARK 3 11 2.9500 - 2.8600 1.00 2720 141 0.2049 0.2391 REMARK 3 12 2.8600 - 2.7800 1.00 2691 144 0.2137 0.2787 REMARK 3 13 2.7800 - 2.7100 1.00 2702 142 0.2244 0.2629 REMARK 3 14 2.7100 - 2.6400 1.00 2676 139 0.2283 0.2982 REMARK 3 15 2.6400 - 2.5800 1.00 2736 147 0.2578 0.3039 REMARK 3 16 2.5800 - 2.5300 1.00 2707 142 0.2561 0.2949 REMARK 3 17 2.5300 - 2.4800 1.00 2684 145 0.2669 0.3365 REMARK 3 18 2.4800 - 2.4300 0.99 2695 142 0.2810 0.3134 REMARK 3 19 2.4300 - 2.3900 1.00 2679 142 0.2859 0.3026 REMARK 3 20 2.3900 - 2.3500 1.00 2718 144 0.3012 0.3169 REMARK 3 21 2.3500 - 2.3100 0.99 2667 142 0.3094 0.3006 REMARK 3 22 2.3100 - 2.2700 1.00 2735 143 0.3187 0.2802 REMARK 3 23 2.2700 - 2.2400 0.99 2688 142 0.3554 0.3534 REMARK 3 24 2.2400 - 2.2100 0.86 2339 123 0.3853 0.4180 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3226 REMARK 3 ANGLE : 0.855 4413 REMARK 3 CHIRALITY : 0.047 545 REMARK 3 PLANARITY : 0.005 566 REMARK 3 DIHEDRAL : 4.901 444 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.6260 99.2175 66.0869 REMARK 3 T TENSOR REMARK 3 T11: 0.3685 T22: 0.3520 REMARK 3 T33: 0.4268 T12: 0.0378 REMARK 3 T13: 0.0694 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 4.2037 L22: 5.9985 REMARK 3 L33: 4.1678 L12: 0.5566 REMARK 3 L13: -0.7730 L23: 1.4238 REMARK 3 S TENSOR REMARK 3 S11: 0.1871 S12: -0.0582 S13: 0.4497 REMARK 3 S21: -0.2560 S22: -0.0565 S23: 0.1784 REMARK 3 S31: -0.3240 S32: -0.2016 S33: -0.0815 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 149 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.2698 71.5569 62.3046 REMARK 3 T TENSOR REMARK 3 T11: 0.3063 T22: 0.3084 REMARK 3 T33: 0.3279 T12: 0.0260 REMARK 3 T13: -0.0117 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 2.0629 L22: 3.3526 REMARK 3 L33: 1.0014 L12: 0.9773 REMARK 3 L13: 0.1655 L23: 0.9029 REMARK 3 S TENSOR REMARK 3 S11: 0.0614 S12: -0.0308 S13: -0.2775 REMARK 3 S21: 0.1385 S22: 0.0282 S23: 0.0298 REMARK 3 S31: 0.0670 S32: -0.0282 S33: -0.0748 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 323 THROUGH 496 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0756 51.7912 32.6543 REMARK 3 T TENSOR REMARK 3 T11: 0.3803 T22: 0.5508 REMARK 3 T33: 0.4971 T12: -0.0348 REMARK 3 T13: 0.0728 T23: -0.1158 REMARK 3 L TENSOR REMARK 3 L11: 2.3466 L22: 3.5475 REMARK 3 L33: 2.6775 L12: -0.2191 REMARK 3 L13: 0.5588 L23: 0.4677 REMARK 3 S TENSOR REMARK 3 S11: 0.0384 S12: 0.7807 S13: -0.2959 REMARK 3 S21: -0.4947 S22: 0.0654 S23: -0.5509 REMARK 3 S31: 0.0475 S32: 0.4775 S33: -0.0598 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 462 THROUGH 469 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9464 83.6921 57.1797 REMARK 3 T TENSOR REMARK 3 T11: 0.2782 T22: 0.4276 REMARK 3 T33: 0.5722 T12: 0.0366 REMARK 3 T13: -0.0096 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 7.0149 L22: 8.1321 REMARK 3 L33: 7.5798 L12: 1.4547 REMARK 3 L13: 1.3473 L23: -0.7828 REMARK 3 S TENSOR REMARK 3 S11: 0.2187 S12: 0.0866 S13: -1.9114 REMARK 3 S21: -0.3469 S22: -0.5111 S23: 1.2928 REMARK 3 S31: 0.2972 S32: -0.5362 S33: 0.4188 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.45 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67874 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 42.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.18300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : 2.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3UL1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE BUFFER (PH 6.0), SODIUM REMARK 280 CITRATE AND DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.39450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.69150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.84750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.69150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.39450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.84750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN I 70 REMARK 465 GLN I 71 REMARK 465 SER I 497 REMARK 465 VAL I 498 REMARK 465 GLU I 499 REMARK 465 GLU I 500 REMARK 465 GLU I 501 REMARK 465 GLU I 502 REMARK 465 ASP I 503 REMARK 465 GLN I 504 REMARK 465 ASN I 505 REMARK 465 VAL I 506 REMARK 465 VAL I 507 REMARK 465 PRO I 508 REMARK 465 GLU I 509 REMARK 465 THR I 510 REMARK 465 THR I 511 REMARK 465 SER I 512 REMARK 465 GLU I 513 REMARK 465 GLY I 514 REMARK 465 PHE I 515 REMARK 465 ALA I 516 REMARK 465 PHE I 517 REMARK 465 GLN I 518 REMARK 465 VAL I 519 REMARK 465 GLN I 520 REMARK 465 ASP I 521 REMARK 465 GLY I 522 REMARK 465 ALA I 523 REMARK 465 PRO I 524 REMARK 465 GLY I 525 REMARK 465 THR I 526 REMARK 465 PHE I 527 REMARK 465 ASN I 528 REMARK 465 PHE I 529 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY I 72 N REMARK 470 LYS I 83 NZ REMARK 470 ASN I 88 CG OD1 ND2 REMARK 470 GLN I 95 NE2 REMARK 470 LYS I 108 CG CD CE NZ REMARK 470 GLN I 109 CG CD OE1 NE2 REMARK 470 ARG I 117 NH1 REMARK 470 LYS I 123 CE NZ REMARK 470 VAL I 125 CG1 CG2 REMARK 470 GLU I 153 CG CD OE1 OE2 REMARK 470 ASN I 241 ND2 REMARK 470 ASP I 247 CG OD1 OD2 REMARK 470 LYS I 291 CG CD CE NZ REMARK 470 ARG I 315 NH1 REMARK 470 LYS I 330 CE NZ REMARK 470 LYS I 348 CE NZ REMARK 470 ASN I 350 ND2 REMARK 470 LYS I 392 CD CE REMARK 470 LYS I 395 CG CD CE NZ REMARK 470 GLU I 411 CG CD OE1 OE2 REMARK 470 ALA I 431 CB REMARK 470 LYS I 432 CG CD CE NZ REMARK 470 LYS I 435 CG CD CE NZ REMARK 470 LYS I 453 CG CD CE NZ REMARK 470 GLU I 458 CG CD OE1 OE2 REMARK 470 LYS I 459 CG CD CE NZ REMARK 470 ILE I 462 CD1 REMARK 470 GLU I 465 CG CD OE1 OE2 REMARK 470 GLU I 466 CG CD OE1 OE2 REMARK 470 LYS I 472 CB CG CD CE NZ REMARK 470 GLU I 474 CG CD OE1 OE2 REMARK 470 LEU I 476 CG CD1 CD2 REMARK 470 GLN I 477 OE1 NE2 REMARK 470 ARG I 478 CG CD NE CZ NH1 NH2 REMARK 470 GLU I 480 CG CD OE1 OE2 REMARK 470 GLU I 482 CG CD OE1 OE2 REMARK 470 SER I 483 OG REMARK 470 TYR I 485 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS I 486 CG CD CE NZ REMARK 470 LEU I 489 CG CD1 CD2 REMARK 470 LEU I 491 CG CD1 CD2 REMARK 470 GLU I 493 CG CD OE1 OE2 REMARK 470 LYS I 494 CG CD CE NZ REMARK 470 PHE I 496 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN I 114 O HOH I 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU I 250 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN I 75 38.64 76.45 REMARK 500 GLN I 109 76.05 36.68 REMARK 500 ASN I 239 156.65 82.29 REMARK 500 LYS I 453 4.84 -68.62 REMARK 500 ARG I 478 43.77 -104.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 7TMY I 70 529 UNP P52293 IMA1_MOUSE 70 529 DBREF 7TMY A 462 469 UNP Q8TAT5 NEIL3_HUMAN 462 469 SEQRES 1 I 460 ASN GLN GLY THR VAL ASN TRP SER VAL GLU ASP ILE VAL SEQRES 2 I 460 LYS GLY ILE ASN SER ASN ASN LEU GLU SER GLN LEU GLN SEQRES 3 I 460 ALA THR GLN ALA ALA ARG LYS LEU LEU SER ARG GLU LYS SEQRES 4 I 460 GLN PRO PRO ILE ASP ASN ILE ILE ARG ALA GLY LEU ILE SEQRES 5 I 460 PRO LYS PHE VAL SER PHE LEU GLY LYS THR ASP CYS SER SEQRES 6 I 460 PRO ILE GLN PHE GLU SER ALA TRP ALA LEU THR ASN ILE SEQRES 7 I 460 ALA SER GLY THR SER GLU GLN THR LYS ALA VAL VAL ASP SEQRES 8 I 460 GLY GLY ALA ILE PRO ALA PHE ILE SER LEU LEU ALA SER SEQRES 9 I 460 PRO HIS ALA HIS ILE SER GLU GLN ALA VAL TRP ALA LEU SEQRES 10 I 460 GLY ASN ILE ALA GLY ASP GLY SER ALA PHE ARG ASP LEU SEQRES 11 I 460 VAL ILE LYS HIS GLY ALA ILE ASP PRO LEU LEU ALA LEU SEQRES 12 I 460 LEU ALA VAL PRO ASP LEU SER THR LEU ALA CYS GLY TYR SEQRES 13 I 460 LEU ARG ASN LEU THR TRP THR LEU SER ASN LEU CYS ARG SEQRES 14 I 460 ASN LYS ASN PRO ALA PRO PRO LEU ASP ALA VAL GLU GLN SEQRES 15 I 460 ILE LEU PRO THR LEU VAL ARG LEU LEU HIS HIS ASN ASP SEQRES 16 I 460 PRO GLU VAL LEU ALA ASP SER CYS TRP ALA ILE SER TYR SEQRES 17 I 460 LEU THR ASP GLY PRO ASN GLU ARG ILE GLU MET VAL VAL SEQRES 18 I 460 LYS LYS GLY VAL VAL PRO GLN LEU VAL LYS LEU LEU GLY SEQRES 19 I 460 ALA THR GLU LEU PRO ILE VAL THR PRO ALA LEU ARG ALA SEQRES 20 I 460 ILE GLY ASN ILE VAL THR GLY THR ASP GLU GLN THR GLN SEQRES 21 I 460 LYS VAL ILE ASP ALA GLY ALA LEU ALA VAL PHE PRO SER SEQRES 22 I 460 LEU LEU THR ASN PRO LYS THR ASN ILE GLN LYS GLU ALA SEQRES 23 I 460 THR TRP THR MET SER ASN ILE THR ALA GLY ARG GLN ASP SEQRES 24 I 460 GLN ILE GLN GLN VAL VAL ASN HIS GLY LEU VAL PRO PHE SEQRES 25 I 460 LEU VAL GLY VAL LEU SER LYS ALA ASP PHE LYS THR GLN SEQRES 26 I 460 LYS GLU ALA ALA TRP ALA ILE THR ASN TYR THR SER GLY SEQRES 27 I 460 GLY THR VAL GLU GLN ILE VAL TYR LEU VAL HIS CYS GLY SEQRES 28 I 460 ILE ILE GLU PRO LEU MET ASN LEU LEU SER ALA LYS ASP SEQRES 29 I 460 THR LYS ILE ILE GLN VAL ILE LEU ASP ALA ILE SER ASN SEQRES 30 I 460 ILE PHE GLN ALA ALA GLU LYS LEU GLY GLU THR GLU LYS SEQRES 31 I 460 LEU SER ILE MET ILE GLU GLU CYS GLY GLY LEU ASP LYS SEQRES 32 I 460 ILE GLU ALA LEU GLN ARG HIS GLU ASN GLU SER VAL TYR SEQRES 33 I 460 LYS ALA SER LEU ASN LEU ILE GLU LYS TYR PHE SER VAL SEQRES 34 I 460 GLU GLU GLU GLU ASP GLN ASN VAL VAL PRO GLU THR THR SEQRES 35 I 460 SER GLU GLY PHE ALA PHE GLN VAL GLN ASP GLY ALA PRO SEQRES 36 I 460 GLY THR PHE ASN PHE SEQRES 1 A 8 PRO ALA HIS LYS LYS PRO LYS THR FORMUL 3 HOH *178(H2 O) HELIX 1 AA1 SER I 77 ASN I 86 1 10 HELIX 2 AA2 ASN I 89 SER I 105 1 17 HELIX 3 AA3 PRO I 111 ALA I 118 1 8 HELIX 4 AA4 LEU I 120 GLY I 129 1 10 HELIX 5 AA5 CYS I 133 SER I 149 1 17 HELIX 6 AA6 THR I 151 GLY I 161 1 11 HELIX 7 AA7 GLY I 162 LEU I 171 1 10 HELIX 8 AA8 HIS I 175 GLY I 191 1 17 HELIX 9 AA9 GLY I 193 HIS I 203 1 11 HELIX 10 AB1 ALA I 205 LEU I 213 1 9 HELIX 11 AB2 ASP I 217 LEU I 221 5 5 HELIX 12 AB3 ALA I 222 CYS I 237 1 16 HELIX 13 AB4 PRO I 245 LEU I 260 1 16 HELIX 14 AB5 ASP I 264 THR I 279 1 16 HELIX 15 AB6 PRO I 282 LYS I 291 1 10 HELIX 16 AB7 VAL I 294 GLY I 303 1 10 HELIX 17 AB8 GLU I 306 VAL I 321 1 16 HELIX 18 AB9 THR I 324 ALA I 334 1 11 HELIX 19 AC1 GLY I 335 ALA I 338 5 4 HELIX 20 AC2 VAL I 339 LEU I 344 1 6 HELIX 21 AC3 LYS I 348 THR I 363 1 16 HELIX 22 AC4 ARG I 366 HIS I 376 1 11 HELIX 23 AC5 GLY I 377 LYS I 388 1 12 HELIX 24 AC6 ASP I 390 GLY I 408 1 19 HELIX 25 AC7 THR I 409 CYS I 419 1 11 HELIX 26 AC8 ILE I 421 LEU I 428 1 8 HELIX 27 AC9 LEU I 429 ALA I 431 5 3 HELIX 28 AD1 ASP I 433 LYS I 453 1 21 HELIX 29 AD2 GLU I 456 CYS I 467 1 12 HELIX 30 AD3 GLY I 468 GLN I 477 1 10 HELIX 31 AD4 ASN I 481 PHE I 496 1 16 CISPEP 1 ASN I 241 PRO I 242 0 -2.90 CRYST1 78.789 89.695 99.383 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011149 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010062 0.00000