HEADER TRANSFERASE 20-JAN-22 7TN5 TITLE CRYSTAL STRUCTURE OF ZEA MAYS INOSITOL-TETRAKISPHOSPHATE KINASE 1 TITLE 2 (ITPK1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL-TETRAKISPHOSPHATE 1-KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 1,INOSITOL- COMPND 5 TRIPHOSPHATE 5/6-KINASE 1,INS(1,4)P(3) 5/6-KINASE 1,LOW PHYTIC ACID COMPND 6 PROTEIN 2,ZMIPK; COMPND 7 EC: 2.7.1.134,2.7.1.159; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 GENE: ITPK1, LPA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATP-GRASP, INOSITOL PHOSPHATE, INSP6, SIGNAL TRANSDUCTION, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.ZONG,H.WANG,S.B.SHEARS REVDAT 2 21-FEB-24 7TN5 1 REMARK REVDAT 1 15-JUN-22 7TN5 0 JRNL AUTH G.ZONG,S.B.SHEARS,H.WANG JRNL TITL STRUCTURAL AND CATALYTIC ANALYSES OF THE INSP 6 KINASE JRNL TITL 2 ACTIVITIES OF HIGHER PLANT ITPKS. JRNL REF FASEB J. V. 36 22380 2022 JRNL REFN ESSN 1530-6860 JRNL PMID 35635723 JRNL DOI 10.1096/FJ.202200393R REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 13628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 730 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 968 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2107 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : -0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.356 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.270 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.903 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2165 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2063 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2945 ; 1.794 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4759 ; 1.258 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 266 ; 8.569 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;33.034 ;20.811 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 339 ;18.478 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.594 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 269 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2413 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 471 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7TN5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262479. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14458 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.87300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M POTASSIUM SODIUM TARTRATE, 100 MM REMARK 280 IMIDAZOLE, PH 8.0, 200 MM SODIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.97167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 143.94333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.95750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 179.92917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.98583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.97167 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 143.94333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 179.92917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 107.95750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.98583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 49.44150 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 85.63519 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 179.92917 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLU A 8 REMARK 465 PRO A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 THR A 14 REMARK 465 ALA A 119 REMARK 465 ASP A 120 REMARK 465 ASP A 216 REMARK 465 VAL A 217 REMARK 465 SER A 218 REMARK 465 PRO A 219 REMARK 465 GLU A 220 REMARK 465 ASP A 221 REMARK 465 ASP A 222 REMARK 465 ALA A 223 REMARK 465 SER A 224 REMARK 465 ALA A 225 REMARK 465 GLN A 226 REMARK 465 GLY A 227 REMARK 465 SER A 228 REMARK 465 VAL A 229 REMARK 465 SER A 230 REMARK 465 PHE A 231 REMARK 465 SER A 232 REMARK 465 GLN A 233 REMARK 465 VAL A 234 REMARK 465 SER A 235 REMARK 465 ASN A 236 REMARK 465 LEU A 237 REMARK 465 PRO A 238 REMARK 465 THR A 239 REMARK 465 GLU A 240 REMARK 465 ARG A 241 REMARK 465 THR A 242 REMARK 465 ALA A 243 REMARK 465 GLU A 244 REMARK 465 GLU A 245 REMARK 465 TYR A 246 REMARK 465 TYR A 247 REMARK 465 GLY A 248 REMARK 465 GLU A 249 REMARK 465 LYS A 250 REMARK 465 SER A 251 REMARK 465 LEU A 252 REMARK 465 GLU A 253 REMARK 465 ASP A 254 REMARK 465 ALA A 255 REMARK 465 GLY A 326 REMARK 465 VAL A 327 REMARK 465 GLY A 328 REMARK 465 ASN A 329 REMARK 465 GLN A 330 REMARK 465 GLN A 331 REMARK 465 GLU A 332 REMARK 465 GLU A 333 REMARK 465 LYS A 334 REMARK 465 GLY A 335 REMARK 465 ALA A 336 REMARK 465 ASN A 337 REMARK 465 HIS A 338 REMARK 465 VAL A 339 REMARK 465 VAL A 340 REMARK 465 VAL A 341 REMARK 465 LYS A 342 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 66 130.10 -170.40 REMARK 500 HIS A 87 54.56 -146.62 REMARK 500 ARG A 101 -8.41 -51.78 REMARK 500 ALA A 159 -95.12 -135.36 REMARK 500 ASP A 160 -30.81 125.36 REMARK 500 THR A 162 -75.23 -62.81 REMARK 500 SER A 165 41.42 -87.27 REMARK 500 SER A 213 168.55 -42.98 REMARK 500 LEU A 214 66.04 62.15 REMARK 500 ASP A 291 9.48 -164.59 REMARK 500 PHE A 301 66.60 39.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 7TN5 A 1 342 UNP Q84Y01 ITPK1_MAIZE 1 342 SEQRES 1 A 342 MET ALA SER ASP ALA ALA ALA GLU PRO SER SER GLY VAL SEQRES 2 A 342 THR HIS PRO PRO ARG TYR VAL ILE GLY TYR ALA LEU ALA SEQRES 3 A 342 PRO LYS LYS GLN GLN SER PHE ILE GLN PRO SER LEU VAL SEQRES 4 A 342 ALA GLN ALA ALA SER ARG GLY MET ASP LEU VAL PRO VAL SEQRES 5 A 342 ASP ALA SER GLN PRO LEU ALA GLU GLN GLY PRO PHE HIS SEQRES 6 A 342 LEU LEU ILE HIS LYS LEU TYR GLY ASP ASP TRP ARG ALA SEQRES 7 A 342 GLN LEU VAL ALA PHE ALA ALA ARG HIS PRO ALA VAL PRO SEQRES 8 A 342 ILE VAL ASP PRO PRO HIS ALA ILE ASP ARG LEU HIS ASN SEQRES 9 A 342 ARG ILE SER MET LEU GLN VAL VAL SER GLU LEU ASP HIS SEQRES 10 A 342 ALA ALA ASP GLN ASP SER THR PHE GLY ILE PRO SER GLN SEQRES 11 A 342 VAL VAL VAL TYR ASP ALA ALA ALA LEU ALA ASP PHE GLY SEQRES 12 A 342 LEU LEU ALA ALA LEU ARG PHE PRO LEU ILE ALA LYS PRO SEQRES 13 A 342 LEU VAL ALA ASP GLY THR ALA LYS SER HIS LYS MET SER SEQRES 14 A 342 LEU VAL TYR HIS ARG GLU GLY LEU GLY LYS LEU ARG PRO SEQRES 15 A 342 PRO LEU VAL LEU GLN GLU PHE VAL ASN HIS GLY GLY VAL SEQRES 16 A 342 ILE PHE LYS VAL TYR VAL VAL GLY GLY HIS VAL THR CYS SEQRES 17 A 342 VAL LYS ARG ARG SER LEU PRO ASP VAL SER PRO GLU ASP SEQRES 18 A 342 ASP ALA SER ALA GLN GLY SER VAL SER PHE SER GLN VAL SEQRES 19 A 342 SER ASN LEU PRO THR GLU ARG THR ALA GLU GLU TYR TYR SEQRES 20 A 342 GLY GLU LYS SER LEU GLU ASP ALA VAL VAL PRO PRO ALA SEQRES 21 A 342 ALA PHE ILE ASN GLN ILE ALA GLY GLY LEU ARG ARG ALA SEQRES 22 A 342 LEU GLY LEU GLN LEU PHE ASN PHE ASP MET ILE ARG ASP SEQRES 23 A 342 VAL ARG ALA GLY ASP ARG TYR LEU VAL ILE ASP ILE ASN SEQRES 24 A 342 TYR PHE PRO GLY TYR ALA LYS MET PRO GLY TYR GLU THR SEQRES 25 A 342 VAL LEU THR ASP PHE PHE TRP GLU MET VAL HIS LYS ASP SEQRES 26 A 342 GLY VAL GLY ASN GLN GLN GLU GLU LYS GLY ALA ASN HIS SEQRES 27 A 342 VAL VAL VAL LYS HET CL A 601 1 HETNAM CL CHLORIDE ION FORMUL 2 CL CL 1- FORMUL 3 HOH *101(H2 O) HELIX 1 AA1 ALA A 26 ILE A 34 1 9 HELIX 2 AA2 GLN A 35 ARG A 45 1 11 HELIX 3 AA3 GLY A 73 HIS A 87 1 15 HELIX 4 AA4 PRO A 95 ARG A 101 1 7 HELIX 5 AA5 ASN A 104 GLU A 114 1 11 HELIX 6 AA6 ASP A 135 PHE A 142 1 8 HELIX 7 AA7 GLY A 143 LEU A 148 5 6 HELIX 8 AA8 HIS A 173 GLY A 178 1 6 HELIX 9 AA9 PRO A 259 GLY A 275 1 17 HELIX 10 AB1 GLY A 303 MET A 307 5 5 HELIX 11 AB2 GLY A 309 VAL A 322 1 14 SHEET 1 AA1 4 MET A 47 PRO A 51 0 SHEET 2 AA1 4 TYR A 19 LEU A 25 1 N TYR A 19 O ASP A 48 SHEET 3 AA1 4 LEU A 66 LYS A 70 1 O LEU A 66 N GLY A 22 SHEET 4 AA1 4 ILE A 92 VAL A 93 1 O VAL A 93 N LEU A 67 SHEET 1 AA2 5 THR A 124 GLY A 126 0 SHEET 2 AA2 5 ARG A 292 TYR A 300 1 O TYR A 293 N GLY A 126 SHEET 3 AA2 5 LEU A 278 ASP A 286 -1 N ASP A 286 O ARG A 292 SHEET 4 AA2 5 ILE A 196 VAL A 202 -1 N PHE A 197 O MET A 283 SHEET 5 AA2 5 HIS A 205 ARG A 211 -1 O HIS A 205 N VAL A 202 SHEET 1 AA3 4 VAL A 131 VAL A 133 0 SHEET 2 AA3 4 LEU A 184 GLU A 188 -1 O LEU A 186 N VAL A 131 SHEET 3 AA3 4 LEU A 152 PRO A 156 -1 N LYS A 155 O VAL A 185 SHEET 4 AA3 4 SER A 169 VAL A 171 -1 O SER A 169 N ALA A 154 CISPEP 1 VAL A 93 ASP A 94 0 -5.82 CISPEP 2 PHE A 150 PRO A 151 0 -4.30 CISPEP 3 PRO A 182 PRO A 183 0 -4.06 CRYST1 98.883 98.883 215.915 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010113 0.005839 0.000000 0.00000 SCALE2 0.000000 0.011677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004631 0.00000