HEADER TRANSFERASE 21-JAN-22 7TNH TITLE CRYSTAL STRUCTURE OF CSF1R KINASE DOMAIN IN COMPLEX WITH DP-6233 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE COLONY-STIMULATING FACTOR 1 RECEPTOR,FIBROBLAST COMPND 3 GROWTH FACTOR RECEPTOR 1 CHIMERA; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: CSF-1 RECEPTOR,CSF-1-R,CSF-1R,M-CSF-R,PROTO-ONCOGENE C-FMS, COMPND 6 FGFR-1,BASIC FIBROBLAST GROWTH FACTOR RECEPTOR 1,BFGFR,BFGF-R-1,FMS- COMPND 7 LIKE TYROSINE KINASE 2,FLT-2,N-SAM,PROTO-ONCOGENE C-FGR; COMPND 8 EC: 2.7.10.1; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: CSF1R RESIDUES 549-922 WITH THE NATIVE KID SUBSTITUTED COMPND 11 WITH THE KID OF FGFR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSF1R, FMS, FGFR1, BFGFR, CEK, FGFBR, FLG, FLT2, HBGFR; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: VCID 7143 KEYWDS HUMAN CSR1R KINASE, CANCER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.E.EDWARDS,T.L.ARAKAKI,L.CHUN,D.L.FLYNN REVDAT 3 18-OCT-23 7TNH 1 REMARK REVDAT 2 31-AUG-22 7TNH 1 JRNL REVDAT 1 24-AUG-22 7TNH 0 JRNL AUTH T.M.CALDWELL,M.D.KAUFMAN,S.C.WISE,Y.MI AHN,M.M.HOOD,W.P.LU, JRNL AUTH 2 W.C.PATT,T.SAMARAKOON,L.VOGETI,S.VOGETI,K.M.YATES, JRNL AUTH 3 S.L.BULFER,B.LE BOURDONNEC,B.D.SMITH,D.L.FLYNN JRNL TITL DISCOVERY OF ACYL UREAS AS HIGHLY SELECTIVE SMALL MOLECULE JRNL TITL 2 CSF1R KINASE INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 74 28929 2022 JRNL REFN ESSN 1464-3405 JRNL PMID 35961461 JRNL DOI 10.1016/J.BMCL.2022.128929 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 9749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 471 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 674 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2078 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.89000 REMARK 3 B22 (A**2) : -2.89000 REMARK 3 B33 (A**2) : 9.39000 REMARK 3 B12 (A**2) : -2.89000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.970 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.355 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.316 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.582 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2158 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1954 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2939 ; 1.234 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4437 ; 0.748 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 274 ; 6.980 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;37.610 ;23.690 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 299 ;15.057 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;24.143 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2481 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 516 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 549 A 912 REMARK 3 ORIGIN FOR THE GROUP (A): 14.614 28.356 -0.932 REMARK 3 T TENSOR REMARK 3 T11: 0.1638 T22: 0.1714 REMARK 3 T33: 0.0247 T12: -0.0078 REMARK 3 T13: -0.0441 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.8525 L22: 3.5195 REMARK 3 L33: 0.6488 L12: 1.2751 REMARK 3 L13: -0.4921 L23: -0.6809 REMARK 3 S TENSOR REMARK 3 S11: 0.2064 S12: -0.0548 S13: -0.1359 REMARK 3 S21: 0.0683 S22: -0.2615 S23: -0.1630 REMARK 3 S31: -0.0632 S32: 0.1072 S33: 0.0551 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7TNH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9752 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 40.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2I0Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CSF1R AT 10.7 MG/ML IN 50 MM TRIS PH REMARK 280 7.5, 200 MM NACL, 5% GLYCEROL WITH 5-FOLD EXCESS OF ARYLAMIDE REMARK 280 COMPOUND AGAINST 10% PEG 10,000, 0.1 M MES PH 6.5 AND 0.1 M REMARK 280 MAGNESIUM ACETATE SOAKED OVER TWO NIGHTS WITH 1 MM DP-6233 AND REMARK 280 20% ETHYLENE GLYCOL AS CRYO, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.54000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.40578 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.89000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 40.54000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 23.40578 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.89000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 40.54000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 23.40578 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.89000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.81156 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 97.78000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 46.81156 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 97.78000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 46.81156 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 97.78000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A1002 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 532 REMARK 465 HIS A 533 REMARK 465 HIS A 534 REMARK 465 HIS A 535 REMARK 465 HIS A 536 REMARK 465 HIS A 537 REMARK 465 HIS A 538 REMARK 465 HIS A 539 REMARK 465 HIS A 540 REMARK 465 GLU A 541 REMARK 465 ASN A 542 REMARK 465 LEU A 543 REMARK 465 TYR A 544 REMARK 465 PHE A 545 REMARK 465 GLN A 546 REMARK 465 GLY A 547 REMARK 465 SER A 548 REMARK 465 SER A 555 REMARK 465 TYR A 556 REMARK 465 GLU A 557 REMARK 465 GLY A 558 REMARK 465 ASN A 559 REMARK 465 ILE A 564 REMARK 465 ASP A 565 REMARK 465 PRO A 566 REMARK 465 THR A 567 REMARK 465 GLN A 568 REMARK 465 LYS A 619 REMARK 465 SER A 620 REMARK 465 THR A 621 REMARK 465 ARG A 679 REMARK 465 PRO A 680 REMARK 465 PRO A 681 REMARK 465 GLY A 682 REMARK 465 LEU A 683 REMARK 465 GLU A 684 REMARK 465 TYR A 685 REMARK 465 SER A 686 REMARK 465 TYR A 687 REMARK 465 ASN A 688 REMARK 465 PRO A 689 REMARK 465 SER A 690 REMARK 465 HIS A 691 REMARK 465 ASN A 692 REMARK 465 PRO A 693 REMARK 465 GLU A 694 REMARK 465 GLU A 695 REMARK 465 GLN A 696 REMARK 465 GLN A 913 REMARK 465 ALA A 914 REMARK 465 GLN A 915 REMARK 465 GLU A 916 REMARK 465 ASP A 917 REMARK 465 ARG A 918 REMARK 465 ARG A 919 REMARK 465 GLU A 920 REMARK 465 ARG A 921 REMARK 465 ASP A 922 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 551 CG CD CE NZ REMARK 470 ILE A 553 CG1 CG2 CD1 REMARK 470 ASN A 580 CG OD1 ND2 REMARK 470 LEU A 582 CG CD1 CD2 REMARK 470 GLN A 583 CG CD OE1 NE2 REMARK 470 LYS A 586 CG CD CE NZ REMARK 470 PHE A 593 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 595 CG CD CE NZ REMARK 470 GLU A 598 CG CD OE1 OE2 REMARK 470 LEU A 604 CG CD1 CD2 REMARK 470 LYS A 606 CG CD CE NZ REMARK 470 GLU A 607 CG CD OE1 OE2 REMARK 470 ASP A 608 CG OD1 OD2 REMARK 470 VAL A 610 CG1 CG2 REMARK 470 LEU A 611 CG CD1 CD2 REMARK 470 LYS A 616 CG CD CE NZ REMARK 470 HIS A 623 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 626 CG CD OE1 OE2 REMARK 470 LYS A 627 CG CD CE NZ REMARK 470 GLU A 628 CG CD OE1 OE2 REMARK 470 HIS A 639 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 642 CG CD OE1 NE2 REMARK 470 ARG A 677 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 678 CG CD CE NZ REMARK 470 LEU A 697 CG CD1 CD2 REMARK 470 ARG A 753 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 756 CG CD1 CD2 REMARK 470 ASN A 788 CG OD1 ND2 REMARK 470 LYS A 812 CG CD CE NZ REMARK 470 ASN A 814 CG OD1 ND2 REMARK 470 VAL A 831 CG1 CG2 REMARK 470 SER A 863 OG REMARK 470 LYS A 864 CG CD CE NZ REMARK 470 LYS A 870 CG CD CE NZ REMARK 470 LYS A 883 CG CD CE NZ REMARK 470 GLU A 896 CG CD OE1 OE2 REMARK 470 GLN A 911 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 578 103.75 -58.89 REMARK 500 ASN A 581 57.06 -103.11 REMARK 500 ASN A 645 36.42 -92.33 REMARK 500 HIS A 776 -63.26 -102.14 REMARK 500 ARG A 777 0.49 85.99 REMARK 500 ASP A 778 46.38 -144.62 REMARK 500 ASN A 788 115.74 -36.81 REMARK 500 ASP A 796 107.67 -161.93 REMARK 500 LYS A 812 89.87 -167.07 REMARK 500 CYS A 830 29.86 48.05 REMARK 500 ASN A 862 -153.50 -179.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 803 O REMARK 620 2 MET A 804 O 74.1 REMARK 620 3 ASP A 806 O 81.4 108.1 REMARK 620 4 TYR A 809 O 129.0 156.8 77.9 REMARK 620 5 HOH A1109 O 144.0 79.2 84.4 79.2 REMARK 620 N 1 2 3 4 DBREF 7TNH A 549 678 UNP P07333 CSF1R_HUMAN 549 678 DBREF 7TNH A 679 699 UNP P11362 FGFR1_HUMAN 577 597 DBREF 7TNH A 753 922 UNP P07333 CSF1R_HUMAN 753 922 SEQADV 7TNH MET A 532 UNP P07333 INITIATING METHIONINE SEQADV 7TNH HIS A 533 UNP P07333 EXPRESSION TAG SEQADV 7TNH HIS A 534 UNP P07333 EXPRESSION TAG SEQADV 7TNH HIS A 535 UNP P07333 EXPRESSION TAG SEQADV 7TNH HIS A 536 UNP P07333 EXPRESSION TAG SEQADV 7TNH HIS A 537 UNP P07333 EXPRESSION TAG SEQADV 7TNH HIS A 538 UNP P07333 EXPRESSION TAG SEQADV 7TNH HIS A 539 UNP P07333 EXPRESSION TAG SEQADV 7TNH HIS A 540 UNP P07333 EXPRESSION TAG SEQADV 7TNH GLU A 541 UNP P07333 EXPRESSION TAG SEQADV 7TNH ASN A 542 UNP P07333 EXPRESSION TAG SEQADV 7TNH LEU A 543 UNP P07333 EXPRESSION TAG SEQADV 7TNH TYR A 544 UNP P07333 EXPRESSION TAG SEQADV 7TNH PHE A 545 UNP P07333 EXPRESSION TAG SEQADV 7TNH GLN A 546 UNP P07333 EXPRESSION TAG SEQADV 7TNH GLY A 547 UNP P07333 EXPRESSION TAG SEQADV 7TNH SER A 548 UNP P07333 EXPRESSION TAG SEQADV 7TNH SER A 686 UNP P11362 CYS 584 CONFLICT SEQRES 1 A 338 MET HIS HIS HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR SEQRES 2 A 338 PHE GLN GLY SER ARG TRP LYS ILE ILE GLU SER TYR GLU SEQRES 3 A 338 GLY ASN SER TYR THR PHE ILE ASP PRO THR GLN LEU PRO SEQRES 4 A 338 TYR ASN GLU LYS TRP GLU PHE PRO ARG ASN ASN LEU GLN SEQRES 5 A 338 PHE GLY LYS THR LEU GLY ALA GLY ALA PHE GLY LYS VAL SEQRES 6 A 338 VAL GLU ALA THR ALA PHE GLY LEU GLY LYS GLU ASP ALA SEQRES 7 A 338 VAL LEU LYS VAL ALA VAL LYS MET LEU LYS SER THR ALA SEQRES 8 A 338 HIS ALA ASP GLU LYS GLU ALA LEU MET SER GLU LEU LYS SEQRES 9 A 338 ILE MET SER HIS LEU GLY GLN HIS GLU ASN ILE VAL ASN SEQRES 10 A 338 LEU LEU GLY ALA CYS THR HIS GLY GLY PRO VAL LEU VAL SEQRES 11 A 338 ILE THR GLU TYR CYS CYS TYR GLY ASP LEU LEU ASN PHE SEQRES 12 A 338 LEU ARG ARG LYS ARG PRO PRO GLY LEU GLU TYR SER TYR SEQRES 13 A 338 ASN PRO SER HIS ASN PRO GLU GLU GLN LEU SER SER ARG SEQRES 14 A 338 ASP LEU LEU HIS PHE SER SER GLN VAL ALA GLN GLY MET SEQRES 15 A 338 ALA PHE LEU ALA SER LYS ASN CYS ILE HIS ARG ASP VAL SEQRES 16 A 338 ALA ALA ARG ASN VAL LEU LEU THR ASN GLY HIS VAL ALA SEQRES 17 A 338 LYS ILE GLY ASP PHE GLY LEU ALA ARG ASP ILE MET ASN SEQRES 18 A 338 ASP SER ASN TYR ILE VAL LYS GLY ASN ALA ARG LEU PRO SEQRES 19 A 338 VAL LYS TRP MET ALA PRO GLU SER ILE PHE ASP CYS VAL SEQRES 20 A 338 TYR THR VAL GLN SER ASP VAL TRP SER TYR GLY ILE LEU SEQRES 21 A 338 LEU TRP GLU ILE PHE SER LEU GLY LEU ASN PRO TYR PRO SEQRES 22 A 338 GLY ILE LEU VAL ASN SER LYS PHE TYR LYS LEU VAL LYS SEQRES 23 A 338 ASP GLY TYR GLN MET ALA GLN PRO ALA PHE ALA PRO LYS SEQRES 24 A 338 ASN ILE TYR SER ILE MET GLN ALA CYS TRP ALA LEU GLU SEQRES 25 A 338 PRO THR HIS ARG PRO THR PHE GLN GLN ILE CYS SER PHE SEQRES 26 A 338 LEU GLN GLU GLN ALA GLN GLU ASP ARG ARG GLU ARG ASP HET NA A1001 1 HET CL A1002 1 HET CL A1003 1 HET CL A1004 1 HET CL A1005 1 HET I9W A1006 30 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM I9W 2,2-DIMETHYL-N-[(6-METHYL-5-{[2-(1-METHYL-1H-PYRAZOL-4- HETNAM 2 I9W YL)PYRIDIN-4-YL]OXY}PYRIDIN-2-YL)CARBAMOYL]PROPANAMIDE FORMUL 2 NA NA 1+ FORMUL 3 CL 4(CL 1-) FORMUL 7 I9W C21 H24 N6 O3 FORMUL 8 HOH *9(H2 O) HELIX 1 AA1 ASN A 572 GLU A 576 5 5 HELIX 2 AA2 PRO A 578 ASN A 580 5 3 HELIX 3 AA3 HIS A 623 GLY A 641 1 19 HELIX 4 AA4 LEU A 671 LYS A 678 1 8 HELIX 5 AA5 SER A 698 LYS A 772 1 22 HELIX 6 AA6 ALA A 780 ARG A 782 5 3 HELIX 7 AA7 PHE A 797 ARG A 801 5 5 HELIX 8 AA8 PRO A 818 MET A 822 5 5 HELIX 9 AA9 ALA A 823 CYS A 830 1 8 HELIX 10 AB1 THR A 833 SER A 850 1 18 HELIX 11 AB2 ASN A 862 GLY A 872 1 11 HELIX 12 AB3 PRO A 882 TRP A 893 1 12 HELIX 13 AB4 GLU A 896 ARG A 900 5 5 HELIX 14 AB5 THR A 902 GLU A 912 1 11 SHEET 1 AA1 5 LEU A 582 ALA A 590 0 SHEET 2 AA1 5 LYS A 595 ALA A 601 -1 O GLU A 598 N GLY A 585 SHEET 3 AA1 5 LYS A 612 MET A 617 -1 O VAL A 615 N VAL A 597 SHEET 4 AA1 5 LEU A 660 THR A 663 -1 O VAL A 661 N LYS A 616 SHEET 5 AA1 5 LEU A 649 CYS A 653 -1 N GLY A 651 O ILE A 662 SHEET 1 AA2 3 GLY A 669 ASP A 670 0 SHEET 2 AA2 3 VAL A 784 THR A 787 -1 O LEU A 786 N GLY A 669 SHEET 3 AA2 3 VAL A 791 ILE A 794 -1 O VAL A 791 N THR A 787 SHEET 1 AA3 2 ILE A 810 LYS A 812 0 SHEET 2 AA3 2 ALA A 815 LEU A 817 -1 O LEU A 817 N ILE A 810 LINK O ILE A 803 NA NA A1001 1555 1555 2.52 LINK O MET A 804 NA NA A1001 1555 1555 3.03 LINK O ASP A 806 NA NA A1001 1555 1555 2.79 LINK O TYR A 809 NA NA A1001 1555 1555 2.91 LINK NA NA A1001 O HOH A1109 1555 1555 2.43 CRYST1 81.080 81.080 146.670 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012333 0.007121 0.000000 0.00000 SCALE2 0.000000 0.014241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006818 0.00000