HEADER LIPID BINDING PROTEIN 24-JAN-22 7TOD TITLE SOLUTION STRUCTURE OF THE PHOSPHATIDYLINOSITOL 3-PHOSPHATE BINDING TITLE 2 DOMAIN FROM THE LEGIONELLA EFFECTOR SETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBVERSION OF EUKARYOTIC TRAFFIC PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 522-629; COMPND 5 SYNONYM: SETA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: C3927_09165; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PHOSPHATIDYLINOSITOL-3-PHOSPHATE, SETA MEMBRANE INTERACTING MOTIF, KEYWDS 2 LIPID BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.H.J.BECK,T.A.ENOKI,G.W.FEIGENSON,L.NICHOLSON,R.OSWALD,Y.MAO REVDAT 2 15-MAY-24 7TOD 1 REMARK REVDAT 1 08-FEB-23 7TOD 0 JRNL AUTH W.H.J.BECK,T.A.ENOKI,G.W.FEIGENSON,L.NICHOLSON,R.OSWALD, JRNL AUTH 2 Y.MAO JRNL TITL SOLUTION STRUCTURE OF THE PHOSPHATIDYLINOSITOL 3-PHOSPHATE JRNL TITL 2 BINDING DOMAIN FROM THE LEGIONELLA EFFECTOR SETA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PONDEROSA-C/S REMARK 3 AUTHORS : WOONGHEE LEE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TOD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262082. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 20 MM SODIUM PHOSPHATE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 6 MG/ML [U-100% 13C; U-100% 15N; REMARK 210 U-80% 2H] PROTEIN, 20 MM SODIUM REMARK 210 PHOSPHATE BUFFER, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HN(CO)CA; 3D HNCA; REMARK 210 3D HNCACB; 3D HCACO; 3D CBCA(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N- REMARK 210 NOESYHSQC; 3D 1H-13C-NOESYHSQC REMARK 210 (AROMATIC); 3D 1H-13C-NOESYHSQC REMARK 210 (ALIPHATIC) REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, PONDEROSA-C/S, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 101 O ALA A 104 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 4 -132.67 59.81 REMARK 500 1 ILE A 5 117.08 -163.30 REMARK 500 1 HIS A 85 176.21 -58.45 REMARK 500 2 THR A 86 -158.57 -92.56 REMARK 500 2 ASP A 106 100.19 -161.07 REMARK 500 3 ASP A 106 110.85 -168.75 REMARK 500 4 ILE A 5 35.56 -153.86 REMARK 500 4 HIS A 85 -58.30 -141.60 REMARK 500 4 THR A 86 -89.70 -63.19 REMARK 500 7 LYS A 6 -70.15 -136.63 REMARK 500 8 ILE A 105 141.22 -39.26 REMARK 500 9 PRO A 45 162.79 -49.86 REMARK 500 10 THR A 86 58.03 -91.80 REMARK 500 10 PHE A 88 -14.78 -38.99 REMARK 500 11 LEU A 26 21.84 39.19 REMARK 500 11 ASP A 106 79.84 -160.44 REMARK 500 12 LEU A 26 -60.56 -136.40 REMARK 500 12 PHE A 88 -19.21 -49.99 REMARK 500 12 ASP A 106 98.44 -160.33 REMARK 500 13 ASP A 2 -130.38 53.19 REMARK 500 13 PRO A 45 162.50 -49.44 REMARK 500 13 ILE A 105 124.17 -29.21 REMARK 500 13 ASP A 106 98.49 -161.93 REMARK 500 14 ILE A 5 19.80 -145.56 REMARK 500 15 ASP A 23 164.26 -49.82 REMARK 500 16 LYS A 4 77.42 56.17 REMARK 500 16 ASP A 106 79.06 -154.56 REMARK 500 17 ASP A 23 152.38 -48.55 REMARK 500 17 LEU A 26 16.71 43.05 REMARK 500 17 HIS A 85 169.35 -43.29 REMARK 500 18 LYS A 6 -67.93 -133.67 REMARK 500 19 PRO A 45 161.82 -48.16 REMARK 500 19 ILE A 105 123.79 -26.41 REMARK 500 20 ASP A 106 109.73 -173.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30985 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE PHOSPHATIDYLINOSITOL 3-PHOSPHATE BINDING REMARK 900 DOMAIN FROM THE LEGIONELLA EFFECTOR SETA DBREF1 7TOD A 1 108 UNP A0A2S6F4N3_LEGPN DBREF2 7TOD A A0A2S6F4N3 522 629 SEQRES 1 A 108 SER ASP GLU LYS ILE LYS THR ALA HIS ASP LEU ILE ASP SEQRES 2 A 108 GLU ILE ILE GLN ASP VAL ILE GLN LEU ASP GLY LYS LEU SEQRES 3 A 108 GLY LEU LEU GLY GLY ASN THR ARG GLN LEU GLU ASP GLY SEQRES 4 A 108 ARG VAL ILE ASN ILE PRO ASN GLY ALA ALA MET ILE PHE SEQRES 5 A 108 ASP ASP TYR LYS LYS TYR LYS GLN GLY GLU LEU THR ALA SEQRES 6 A 108 GLU SER ALA LEU GLU SER MET ILE LYS ILE ALA LYS LEU SEQRES 7 A 108 SER ASN GLN LEU ASN ARG HIS THR PHE PHE ASN GLN ARG SEQRES 8 A 108 GLN PRO GLU THR GLY GLN PHE TYR LYS LYS VAL ALA ALA SEQRES 9 A 108 ILE ASP LEU GLN HELIX 1 AA1 THR A 7 ASP A 23 1 17 HELIX 2 AA2 PRO A 45 GLY A 61 1 17 HELIX 3 AA3 THR A 64 HIS A 85 1 22 HELIX 4 AA4 PHE A 87 ARG A 91 5 5 HELIX 5 AA5 GLN A 92 ALA A 104 1 13 SHEET 1 AA1 2 ASN A 32 GLN A 35 0 SHEET 2 AA1 2 VAL A 41 ILE A 44 -1 O ILE A 44 N ASN A 32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1