HEADER OXIDOREDUCTASE 24-JAN-22 7TOL TITLE X-RAY CRYSTAL STRUCTURE OF GLYCEROL DIBIPHYTANYL GLYCEROL TETRAETHER - TITLE 2 MACROCYCLIC ARCHAEOL SYNTHASE (GDGT-MAS) FROM METHANOCALDOCOCCUS TITLE 3 JANNASCHII WITH ARCHAEAL LIPID, 5'DEOXYADENOSINE, AND METHIONINE TITLE 4 BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL DIBIPHYTANYL GLYCEROL TETRAETHER - MACROCYCLIC COMPND 3 ARCHAEOL SYNTHASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: 7,8-DIHYDRO-6-HYDROXYMETHYLPTERIN DIMETHYLTRANSFERASE, 6- COMPND 6 HYDROXYMETHYL-H(2)PTERIN DIMETHYLTRANSFERASE; COMPND 7 EC: 2.1.1.-; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE FIRST 20 RESIDUES ARE FROM A TAG AND ARE DENOTED COMPND 10 WITH NEGATIVE NUMBERS. THE 21ST RESIDUE, METHIONINE, IS THE START OF COMPND 11 THE NATIVE PROTEIN AND HAS SEQUENCE NUMBER 1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: MJ0619; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A KEYWDS RADICAL SAM ENZYME, BIPHYTANYL CHAIN, GLYCEROL DIBIPHYTANYL GLYCEROL KEYWDS 2 TETRAETHER, ARCHAEAL LIPID MODIFICATION, [4FE-4S] CLUSTER, KEYWDS 3 RUBREDOXIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.T.LLOYD,S.J.BOOKER,A.K.BOAL REVDAT 3 18-OCT-23 7TOL 1 REMARK REVDAT 2 14-SEP-22 7TOL 1 JRNL REVDAT 1 31-AUG-22 7TOL 0 JRNL AUTH C.T.LLOYD,D.F.IWIG,B.WANG,M.COSSU,W.W.METCALF,A.K.BOAL, JRNL AUTH 2 S.J.BOOKER JRNL TITL DISCOVERY, STRUCTURE AND MECHANISM OF A TETRAETHER LIPID JRNL TITL 2 SYNTHASE. JRNL REF NATURE V. 609 197 2022 JRNL REFN ESSN 1476-4687 JRNL PMID 35882349 JRNL DOI 10.1038/S41586-022-05120-2 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.7 REMARK 3 NUMBER OF REFLECTIONS : 53752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.260 REMARK 3 FREE R VALUE TEST SET COUNT : 3363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8400 - 5.8600 0.97 2461 168 0.1833 0.2305 REMARK 3 2 5.8500 - 4.6500 0.96 2446 164 0.1591 0.1836 REMARK 3 3 4.6500 - 4.0600 0.89 2231 145 0.1515 0.1797 REMARK 3 4 4.0600 - 3.6900 0.92 2334 153 0.1606 0.2041 REMARK 3 5 3.6900 - 3.4300 0.92 2334 162 0.1734 0.2140 REMARK 3 6 3.4300 - 3.2200 0.95 2406 157 0.1839 0.2553 REMARK 3 7 3.2200 - 3.0600 0.95 2440 166 0.1881 0.2611 REMARK 3 8 3.0600 - 2.9300 0.97 2432 166 0.1997 0.2341 REMARK 3 9 2.9300 - 2.8200 0.96 2426 163 0.1994 0.2247 REMARK 3 10 2.8200 - 2.7200 0.97 2474 168 0.1924 0.2001 REMARK 3 11 2.7200 - 2.6300 0.97 2494 162 0.1937 0.2772 REMARK 3 12 2.6300 - 2.5600 0.95 2404 160 0.1996 0.2597 REMARK 3 13 2.5600 - 2.4900 0.93 2377 156 0.2026 0.2183 REMARK 3 14 2.4900 - 2.4300 0.93 2368 154 0.2057 0.2794 REMARK 3 15 2.4300 - 2.3800 0.93 2311 157 0.2057 0.2543 REMARK 3 16 2.3800 - 2.3200 0.90 2335 146 0.2156 0.2417 REMARK 3 17 2.3200 - 2.2800 0.86 2164 144 0.2203 0.2764 REMARK 3 18 2.2800 - 2.2400 0.79 2008 128 0.2220 0.2623 REMARK 3 19 2.2400 - 2.2000 0.74 1883 131 0.2091 0.2454 REMARK 3 20 2.2000 - 2.1600 0.66 1673 107 0.2282 0.2402 REMARK 3 21 2.1600 - 2.1200 0.59 1491 106 0.2196 0.2803 REMARK 3 22 2.1200 - 2.0900 0.45 1132 76 0.2353 0.2601 REMARK 3 23 2.0900 - 2.0600 0.38 975 68 0.2296 0.2540 REMARK 3 24 2.0600 - 2.0300 0.31 790 56 0.2163 0.3215 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 440:499 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.210 59.264 33.013 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.0999 REMARK 3 T33: 0.1484 T12: 0.0022 REMARK 3 T13: -0.0125 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.3044 L22: 0.0691 REMARK 3 L33: 0.1520 L12: -0.1033 REMARK 3 L13: 0.1695 L23: -0.0289 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.0298 S13: 0.0847 REMARK 3 S21: 0.0328 S22: -0.0236 S23: 0.0725 REMARK 3 S31: 0.0054 S32: 0.0004 S33: -0.0022 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 606:606 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.993 59.003 35.481 REMARK 3 T TENSOR REMARK 3 T11: 0.4035 T22: 0.4709 REMARK 3 T33: 0.3706 T12: 0.0482 REMARK 3 T13: -0.1725 T23: 0.0415 REMARK 3 L TENSOR REMARK 3 L11: 8.7866 L22: 6.9063 REMARK 3 L33: 7.1971 L12: -3.0591 REMARK 3 L13: 7.4666 L23: -4.8306 REMARK 3 S TENSOR REMARK 3 S11: 0.3422 S12: -0.2456 S13: -0.2350 REMARK 3 S21: 0.0858 S22: -0.0694 S23: -0.0621 REMARK 3 S31: 0.3814 S32: -0.0934 S33: -0.2737 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID -1:86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.497 40.411 25.865 REMARK 3 T TENSOR REMARK 3 T11: 0.1901 T22: 0.1014 REMARK 3 T33: 0.2024 T12: 0.0125 REMARK 3 T13: 0.0137 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.4105 L22: 0.4217 REMARK 3 L33: 0.1691 L12: 0.1543 REMARK 3 L13: 0.1574 L23: 0.0860 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.1114 S13: -0.3009 REMARK 3 S21: -0.1526 S22: -0.0227 S23: 0.3115 REMARK 3 S31: 0.2077 S32: -0.0523 S33: -0.0019 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 87:325 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.168 53.400 39.572 REMARK 3 T TENSOR REMARK 3 T11: 0.0719 T22: 0.2062 REMARK 3 T33: 0.0818 T12: 0.0346 REMARK 3 T13: -0.0581 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 0.9644 L22: 1.2945 REMARK 3 L33: 0.5975 L12: 0.1164 REMARK 3 L13: 0.4701 L23: 0.0264 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: 0.0630 S13: 0.0106 REMARK 3 S21: 0.4202 S22: -0.0640 S23: -0.3411 REMARK 3 S31: 0.0031 S32: 0.2918 S33: -0.0700 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 326:439 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.965 32.750 51.272 REMARK 3 T TENSOR REMARK 3 T11: 0.7341 T22: 0.2863 REMARK 3 T33: 0.3148 T12: 0.1131 REMARK 3 T13: -0.3227 T23: 0.4030 REMARK 3 L TENSOR REMARK 3 L11: 0.1684 L22: 0.0909 REMARK 3 L33: 0.1992 L12: -0.0078 REMARK 3 L13: 0.2105 L23: 0.0019 REMARK 3 S TENSOR REMARK 3 S11: 0.4255 S12: -0.7091 S13: -0.7686 REMARK 3 S21: 0.9037 S22: -0.1000 S23: -0.3037 REMARK 3 S31: 0.6386 S32: 0.1586 S33: 0.3304 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000259558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53752 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7TOM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, PEG 300, 5'DEOXYADENOSINE AND REMARK 280 METHIONINE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.49950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.76000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.79900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.76000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.49950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.79900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 GLY A 376 REMARK 465 LYS A 377 REMARK 465 SER A 378 REMARK 465 LYS A 379 REMARK 465 ASP A 398 REMARK 465 LEU A 399 REMARK 465 ASP A 400 REMARK 465 LYS A 401 REMARK 465 GLU A 500 REMARK 465 ASP A 501 REMARK 465 ASP A 502 REMARK 465 ARG A 503 REMARK 465 GLU A 504 REMARK 465 ASP A 505 REMARK 465 TYR A 506 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 375 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 0 113.77 -168.62 REMARK 500 LYS A 70 -50.98 -141.23 REMARK 500 PRO A 74 41.29 -99.66 REMARK 500 VAL A 243 -57.14 -123.00 REMARK 500 PRO A 312 4.05 -68.72 REMARK 500 CYS A 438 118.44 -163.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 892 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 893 DISTANCE = 6.27 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 601 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 9 SG REMARK 620 2 CYS A 12 SG 109.1 REMARK 620 3 CYS A 33 SG 106.1 112.2 REMARK 620 4 HIS A 36 ND1 109.5 110.8 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 603 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 73 SG REMARK 620 2 SF4 A 603 S1 119.3 REMARK 620 3 SF4 A 603 S2 114.4 103.9 REMARK 620 4 SF4 A 603 S4 109.4 104.1 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 603 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 77 SG REMARK 620 2 SF4 A 603 S2 113.2 REMARK 620 3 SF4 A 603 S3 124.0 104.0 REMARK 620 4 SF4 A 603 S4 105.4 104.3 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 603 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 80 SG REMARK 620 2 SF4 A 603 S1 102.1 REMARK 620 3 SF4 A 603 S2 123.1 103.8 REMARK 620 4 SF4 A 603 S3 116.9 104.7 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 603 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 ND1 REMARK 620 2 SF4 A 603 S1 113.8 REMARK 620 3 SF4 A 603 S3 109.1 104.8 REMARK 620 4 SF4 A 603 S4 119.7 104.1 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 602 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 98 SG REMARK 620 2 SF4 A 602 S2 122.4 REMARK 620 3 SF4 A 602 S3 98.7 104.1 REMARK 620 4 SF4 A 602 S4 120.4 104.0 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 602 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 102 SG REMARK 620 2 SF4 A 602 S1 127.0 REMARK 620 3 SF4 A 602 S3 113.4 103.8 REMARK 620 4 SF4 A 602 S4 101.5 104.3 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 602 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 105 SG REMARK 620 2 SF4 A 602 S1 106.7 REMARK 620 3 SF4 A 602 S2 120.3 104.4 REMARK 620 4 SF4 A 602 S4 115.7 104.3 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 604 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 338 SG REMARK 620 2 SF4 A 604 S1 125.1 REMARK 620 3 SF4 A 604 S3 111.4 103.5 REMARK 620 4 SF4 A 604 S4 106.4 103.9 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 604 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 439 SD REMARK 620 2 SF4 A 604 S2 133.9 REMARK 620 3 SF4 A 604 S3 110.4 103.9 REMARK 620 4 SF4 A 604 S4 96.5 103.8 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 604 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 455 SG REMARK 620 2 SF4 A 604 S1 107.7 REMARK 620 3 SF4 A 604 S2 104.3 105.0 REMARK 620 4 SF4 A 604 S3 130.2 103.5 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 604 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 470 SG REMARK 620 2 SF4 A 604 S1 109.5 REMARK 620 3 SF4 A 604 S2 110.9 105.0 REMARK 620 4 SF4 A 604 S4 122.4 104.0 103.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 602 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 606 O REMARK 620 2 SF4 A 602 S1 103.9 REMARK 620 3 SF4 A 602 S2 144.6 104.2 REMARK 620 4 SF4 A 602 S3 89.8 103.8 103.9 REMARK 620 5 MET A 606 N 62.4 162.9 85.5 87.0 REMARK 620 N 1 2 3 4 DBREF 7TOL A 1 506 UNP Q58036 HMPTM_METJA 1 506 SEQADV 7TOL MET A -19 UNP Q58036 INITIATING METHIONINE SEQADV 7TOL GLY A -18 UNP Q58036 EXPRESSION TAG SEQADV 7TOL SER A -17 UNP Q58036 EXPRESSION TAG SEQADV 7TOL SER A -16 UNP Q58036 EXPRESSION TAG SEQADV 7TOL HIS A -15 UNP Q58036 EXPRESSION TAG SEQADV 7TOL HIS A -14 UNP Q58036 EXPRESSION TAG SEQADV 7TOL HIS A -13 UNP Q58036 EXPRESSION TAG SEQADV 7TOL HIS A -12 UNP Q58036 EXPRESSION TAG SEQADV 7TOL HIS A -11 UNP Q58036 EXPRESSION TAG SEQADV 7TOL HIS A -10 UNP Q58036 EXPRESSION TAG SEQADV 7TOL SER A -9 UNP Q58036 EXPRESSION TAG SEQADV 7TOL SER A -8 UNP Q58036 EXPRESSION TAG SEQADV 7TOL GLY A -7 UNP Q58036 EXPRESSION TAG SEQADV 7TOL LEU A -6 UNP Q58036 EXPRESSION TAG SEQADV 7TOL VAL A -5 UNP Q58036 EXPRESSION TAG SEQADV 7TOL PRO A -4 UNP Q58036 EXPRESSION TAG SEQADV 7TOL ARG A -3 UNP Q58036 EXPRESSION TAG SEQADV 7TOL GLY A -2 UNP Q58036 EXPRESSION TAG SEQADV 7TOL SER A -1 UNP Q58036 EXPRESSION TAG SEQADV 7TOL HIS A 0 UNP Q58036 EXPRESSION TAG SEQRES 1 A 526 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 526 LEU VAL PRO ARG GLY SER HIS MET GLU LYS LYS THR LEU SEQRES 3 A 526 SER LEU CYS PRO ILE CYS LEU LYS ARG ILE PRO ALA THR SEQRES 4 A 526 ILE LEU GLU GLU ASP GLY LYS ILE ILE ILE LYS LYS THR SEQRES 5 A 526 CYS PRO GLU HIS GLY GLU PHE LYS ASP ILE TYR TRP GLY SEQRES 6 A 526 ASP ALA GLU LEU TYR LYS LYS PHE ASP LYS TYR GLU PHE SEQRES 7 A 526 ILE GLY LYS ILE GLU VAL THR ASN THR LYS VAL LYS ASN SEQRES 8 A 526 GLY CYS PRO TYR ASP CYS GLY LEU CYS PRO ASN HIS LYS SEQRES 9 A 526 SER THR THR ILE LEU ALA ASN ILE ASP VAL THR ASN ARG SEQRES 10 A 526 CYS ASN LEU ASN CYS PRO ILE CYS PHE ALA ASN ALA ASN SEQRES 11 A 526 LYS SER GLY LYS VAL TYR GLU PRO SER PHE GLU ASP ILE SEQRES 12 A 526 LYS ARG MET MET GLU ASN LEU ARG LYS GLU ILE PRO PRO SEQRES 13 A 526 THR PRO ALA ILE GLN PHE ALA GLY GLY GLU PRO THR VAL SEQRES 14 A 526 ARG SER ASP LEU PRO GLU LEU ILE LYS LEU ALA ARG ASP SEQRES 15 A 526 MET GLY PHE LEU HIS VAL GLN LEU ALA THR ASN GLY ILE SEQRES 16 A 526 LYS LEU LYS ASN ILE ASN TYR LEU LYS LYS LEU LYS GLU SEQRES 17 A 526 ALA GLY LEU SER THR ILE TYR LEU GLN PHE ASP GLY ILE SEQRES 18 A 526 SER GLU LYS PRO TYR LEU VAL ALA ARG GLY LYS ASN LEU SEQRES 19 A 526 LEU PRO ILE LYS GLN LYS VAL ILE GLU ASN CYS LYS LYS SEQRES 20 A 526 VAL GLY PHE ASP SER VAL VAL LEU VAL PRO THR LEU VAL SEQRES 21 A 526 ARG GLY VAL ASN ASP ASN GLU VAL GLY GLY ILE ILE ARG SEQRES 22 A 526 TYR ALA ALA GLU ASN VAL ASP VAL VAL ARG GLY ILE ASN SEQRES 23 A 526 PHE GLN PRO VAL SER PHE THR GLY ARG VAL ASP GLU LYS SEQRES 24 A 526 THR LEU LEU GLU GLY ARG ILE THR ILE PRO ASP PHE ILE SEQRES 25 A 526 LYS LEU VAL GLU GLU GLN THR ASP GLY GLU ILE THR GLU SEQRES 26 A 526 GLU ASP PHE TYR PRO VAL PRO SER VAL ALA PRO ILE SER SEQRES 27 A 526 VAL LEU VAL GLU LYS LEU THR ASN ASP ARG LYS PRO THR SEQRES 28 A 526 LEU SER SER HIS GLN HIS CYS GLY THR SER THR TYR VAL SEQRES 29 A 526 PHE VAL ASP GLU ASP GLY LYS LEU ILE PRO ILE THR ARG SEQRES 30 A 526 PHE ILE ASP VAL GLU GLY PHE LEU GLU ILE VAL LYS GLU SEQRES 31 A 526 LYS ILE GLU GLU ILE GLY LYS SER LYS MET HIS ASP VAL SEQRES 32 A 526 LYS VAL LEU GLY GLU ILE ALA LEU LYS LEU PRO SER LEU SEQRES 33 A 526 ILE ASP LEU ASP LYS ALA PRO LYS SER VAL ASN ILE LYS SEQRES 34 A 526 LYS ILE ILE ASP LEU ILE LEU SER VAL LEU LYS SER ASP SEQRES 35 A 526 TYR SER ALA LEU ALA GLU LEU HIS TYR HIS MET LEU MET SEQRES 36 A 526 ILE SER CYS MET HIS PHE MET ASP ALA TYR ASN PHE ASP SEQRES 37 A 526 VAL LYS ARG VAL MET ARG CYS CYS ILE HIS TYR ALA THR SEQRES 38 A 526 PRO ASP ASP ARG ILE ILE PRO PHE CYS THR TYR ASN THR SEQRES 39 A 526 LEU HIS ARG GLN GLU VAL GLU GLU LYS PHE SER ILE PRO SEQRES 40 A 526 LEU GLU GLU TRP LYS ARG MET HIS LYS ILE GLY GLY GLU SEQRES 41 A 526 ASP ASP ARG GLU ASP TYR HET FE A 601 1 HET SF4 A 602 8 HET SF4 A 603 8 HET SF4 A 604 8 HET 5AD A 605 18 HET MET A 606 9 HET L1P A 607 50 HET PGE A 608 10 HET L4P A 609 55 HETNAM FE FE (III) ION HETNAM SF4 IRON/SULFUR CLUSTER HETNAM 5AD 5'-DEOXYADENOSINE HETNAM MET METHIONINE HETNAM L1P 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETNAM L4P 3-[GLYCEROLYLPHOSPHONYL]-[1,2-DI-PHYTANYL]GLYCEROL HETSYN L1P 1,2-DI-1-(3,7,11,15-TETRAMETHYL-HEXADECANE)-SN-GLYCERO- HETSYN 2 L1P 3-PHOSPHATE HETSYN L4P 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN- HETSYN 2 L4P GLYCEROL FORMUL 2 FE FE 3+ FORMUL 3 SF4 3(FE4 S4) FORMUL 6 5AD C10 H13 N5 O3 FORMUL 7 MET C5 H11 N O2 S FORMUL 8 L1P C43 H89 O6 P FORMUL 9 PGE C6 H14 O4 FORMUL 10 L4P C46 H95 O8 P FORMUL 11 HOH *193(H2 O) HELIX 1 AA1 ASP A 46 ASP A 54 1 9 HELIX 2 AA2 LYS A 55 GLU A 57 5 3 HELIX 3 AA3 SER A 119 LYS A 132 1 14 HELIX 4 AA4 GLU A 146 ARG A 150 5 5 HELIX 5 AA5 ASP A 152 MET A 163 1 12 HELIX 6 AA6 GLY A 174 LYS A 178 5 5 HELIX 7 AA7 ASN A 179 GLY A 190 1 12 HELIX 8 AA8 SER A 202 GLY A 211 1 10 HELIX 9 AA9 LEU A 214 GLY A 229 1 16 HELIX 10 AB1 ASN A 244 ASN A 246 5 3 HELIX 11 AB2 GLU A 247 ASN A 258 1 12 HELIX 12 AB3 ASP A 277 GLY A 284 1 8 HELIX 13 AB4 THR A 287 THR A 299 1 13 HELIX 14 AB5 THR A 304 PHE A 308 5 5 HELIX 15 AB6 VAL A 314 ASN A 326 1 13 HELIX 16 AB7 ILE A 355 ILE A 359 1 5 HELIX 17 AB8 ASP A 360 ILE A 375 1 16 HELIX 18 AB9 HIS A 381 LEU A 393 1 13 HELIX 19 AC1 PRO A 394 ILE A 397 5 4 HELIX 20 AC2 ASN A 407 LEU A 419 1 13 HELIX 21 AC3 ASP A 422 TYR A 431 1 10 HELIX 22 AC4 ASP A 448 MET A 453 1 6 HELIX 23 AC5 PHE A 469 HIS A 476 1 8 HELIX 24 AC6 HIS A 476 PHE A 484 1 9 HELIX 25 AC7 LEU A 488 ARG A 493 1 6 SHEET 1 AA1 4 HIS A 0 LEU A 8 0 SHEET 2 AA1 4 ARG A 15 GLU A 23 -1 O GLU A 22 N HIS A 0 SHEET 3 AA1 4 LYS A 26 CYS A 33 -1 O LYS A 30 N THR A 19 SHEET 4 AA1 4 GLY A 37 TRP A 44 -1 O GLY A 37 N CYS A 33 SHEET 1 AA2 5 THR A 238 LEU A 239 0 SHEET 2 AA2 5 VAL A 262 PRO A 269 1 O GLN A 268 N LEU A 239 SHEET 3 AA2 5 LEU A 434 MET A 439 1 O SER A 437 N ILE A 265 SHEET 4 AA2 5 GLY A 339 VAL A 346 -1 N THR A 342 O ILE A 436 SHEET 5 AA2 5 LEU A 352 PRO A 354 -1 O ILE A 353 N PHE A 345 SHEET 1 AA311 TYR A 309 PRO A 310 0 SHEET 2 AA311 GLY A 339 VAL A 346 -1 O SER A 341 N TYR A 309 SHEET 3 AA311 LEU A 434 MET A 439 -1 O ILE A 436 N THR A 342 SHEET 4 AA311 VAL A 262 PRO A 269 1 N ILE A 265 O SER A 437 SHEET 5 AA311 VAL A 233 VAL A 236 1 N VAL A 233 O ARG A 263 SHEET 6 AA311 THR A 193 GLN A 197 1 N LEU A 196 O VAL A 236 SHEET 7 AA311 HIS A 167 THR A 172 1 N LEU A 170 O TYR A 195 SHEET 8 AA311 ALA A 139 ALA A 143 1 N ILE A 140 O GLN A 169 SHEET 9 AA311 LEU A 89 ASP A 93 1 N ALA A 90 O GLN A 141 SHEET 10 AA311 ILE A 457 ALA A 460 1 O HIS A 458 N ASN A 91 SHEET 11 AA311 ILE A 466 PRO A 468 -1 O ILE A 467 N TYR A 459 SHEET 1 AA4 2 LYS A 114 VAL A 115 0 SHEET 2 AA4 2 ILE A 486 PRO A 487 -1 O ILE A 486 N VAL A 115 LINK SG CYS A 9 FE FE A 601 1555 1555 2.29 LINK SG CYS A 12 FE FE A 601 1555 1555 2.25 LINK SG CYS A 33 FE FE A 601 1555 1555 2.33 LINK ND1 HIS A 36 FE FE A 601 1555 1555 2.21 LINK SG CYS A 73 FE3 SF4 A 603 1555 1555 2.26 LINK SG CYS A 77 FE1 SF4 A 603 1555 1555 2.27 LINK SG CYS A 80 FE4 SF4 A 603 1555 1555 2.27 LINK ND1 HIS A 83 FE2 SF4 A 603 1555 1555 2.04 LINK SG CYS A 98 FE1 SF4 A 602 1555 1555 2.27 LINK SG CYS A 102 FE2 SF4 A 602 1555 1555 2.27 LINK SG CYS A 105 FE3 SF4 A 602 1555 1555 2.27 LINK SG CYS A 338 FE2 SF4 A 604 1555 1555 2.28 LINK SD MET A 439 FE1 SF4 A 604 1555 1555 2.31 LINK SG CYS A 455 FE4 SF4 A 604 1555 1555 2.25 LINK SG CYS A 470 FE3 SF4 A 604 1555 1555 2.26 LINK FE4 SF4 A 602 O MET A 606 1555 1555 2.63 LINK FE4 SF4 A 602 N MET A 606 1555 1555 2.70 CISPEP 1 CYS A 73 PRO A 74 0 0.62 CISPEP 2 CYS A 77 GLY A 78 0 -1.44 CISPEP 3 GLY A 78 LEU A 79 0 -2.60 CISPEP 4 ILE A 134 PRO A 135 0 -2.43 CISPEP 5 GLY A 144 GLY A 145 0 3.40 CRYST1 56.999 77.598 117.520 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017544 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008509 0.00000