HEADER LIGASE 24-JAN-22 7TOT TITLE CRYSTAL STRUCTURE OF PANTOTHENATE SYNTHETASE FROM BARTONELLA HENSELAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTOTHENATE SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BAHEA.00498.A.B1; COMPND 5 SYNONYM: PS,PANTOATE--BETA-ALANINE LIGASE,PANTOATE-ACTIVATING ENZYME; COMPND 6 EC: 6.3.2.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BARTONELLA HENSELAE (STRAIN ATCC 49882 / DSM SOURCE 3 28221 / HOUSTON 1); SOURCE 4 ORGANISM_TAXID: 283166; SOURCE 5 STRAIN: ATCC 49882 / DSM 28221 / HOUSTON 1; SOURCE 6 GENE: PANC, BH05120; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, PANTOTHENATE SYNTHETASE, PANTOATE--BETA-ALANINE LIGASE, ATP KEYWDS 2 BINDING, NUCLEOTIDE BINDING, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 3 GENOMICS CENTER FOR INFECTIOUS DISEASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 18-OCT-23 7TOT 1 REMARK REVDAT 1 13-APR-22 7TOT 0 JRNL AUTH M.J.BOLEJACK,D.M.DRANOW,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF PANTOTHENATE SYNTHETASE FROM BARTONELLA JRNL TITL 2 HENSELAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 4438 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 58669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.560 REMARK 3 FREE R VALUE TEST SET COUNT : 2089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3500 - 4.4400 0.95 3834 100 0.1481 0.1445 REMARK 3 2 4.4400 - 3.5200 0.96 3842 119 0.1470 0.1978 REMARK 3 3 3.5200 - 3.0800 0.96 3819 130 0.1720 0.2717 REMARK 3 4 3.0800 - 2.8000 0.95 3761 184 0.1904 0.1857 REMARK 3 5 2.8000 - 2.6000 0.95 3781 147 0.1980 0.2178 REMARK 3 6 2.6000 - 2.4400 0.95 3730 145 0.1961 0.2378 REMARK 3 7 2.4400 - 2.3200 0.95 3770 132 0.1955 0.2633 REMARK 3 8 2.3200 - 2.2200 0.95 3771 128 0.2010 0.2442 REMARK 3 9 2.2200 - 2.1300 0.95 3817 117 0.1966 0.2151 REMARK 3 10 2.1300 - 2.0600 0.94 3726 162 0.2006 0.2399 REMARK 3 11 2.0600 - 2.0000 0.94 3750 141 0.2101 0.2250 REMARK 3 12 2.0000 - 1.9400 0.95 3776 145 0.2325 0.2564 REMARK 3 13 1.9400 - 1.8900 0.94 3750 123 0.2372 0.2486 REMARK 3 14 1.8900 - 1.8400 0.94 3696 155 0.2614 0.3308 REMARK 3 15 1.8400 - 1.8000 0.94 3757 161 0.2769 0.3220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3539 -1.4212 0.4709 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.2404 REMARK 3 T33: 0.1764 T12: -0.0092 REMARK 3 T13: 0.0162 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.5996 L22: 2.4180 REMARK 3 L33: 3.8596 L12: 0.2813 REMARK 3 L13: -0.1752 L23: -0.1685 REMARK 3 S TENSOR REMARK 3 S11: -0.0778 S12: 0.1770 S13: 0.0161 REMARK 3 S21: -0.2616 S22: -0.0285 S23: -0.2300 REMARK 3 S31: -0.0671 S32: 0.4496 S33: 0.0818 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4507 -13.2372 -26.2224 REMARK 3 T TENSOR REMARK 3 T11: 0.5795 T22: 0.5615 REMARK 3 T33: 0.2677 T12: -0.0400 REMARK 3 T13: 0.0266 T23: -0.1111 REMARK 3 L TENSOR REMARK 3 L11: 3.2842 L22: 5.0457 REMARK 3 L33: 6.8370 L12: 0.1080 REMARK 3 L13: -0.2337 L23: 3.1698 REMARK 3 S TENSOR REMARK 3 S11: 0.0913 S12: 0.3897 S13: -0.2623 REMARK 3 S21: -0.4586 S22: -0.3369 S23: 0.1652 REMARK 3 S31: 0.0236 S32: -0.7843 S33: 0.2108 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4989 -16.5858 -18.9746 REMARK 3 T TENSOR REMARK 3 T11: 0.5757 T22: 0.7820 REMARK 3 T33: 0.3883 T12: -0.1160 REMARK 3 T13: 0.0424 T23: -0.2267 REMARK 3 L TENSOR REMARK 3 L11: 1.6631 L22: 1.6379 REMARK 3 L33: 4.2075 L12: 1.7040 REMARK 3 L13: -0.1162 L23: -0.2503 REMARK 3 S TENSOR REMARK 3 S11: -0.0941 S12: -0.3542 S13: 0.0918 REMARK 3 S21: 0.0592 S22: -0.4816 S23: 0.5173 REMARK 3 S31: 0.8616 S32: -1.2334 S33: 0.5120 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9976 6.6306 20.8306 REMARK 3 T TENSOR REMARK 3 T11: 0.2680 T22: 0.3100 REMARK 3 T33: 0.2648 T12: 0.0840 REMARK 3 T13: -0.0053 T23: -0.0712 REMARK 3 L TENSOR REMARK 3 L11: 2.8330 L22: 2.8500 REMARK 3 L33: 3.9943 L12: -0.1334 REMARK 3 L13: -0.0469 L23: 0.0973 REMARK 3 S TENSOR REMARK 3 S11: -0.0491 S12: -0.1843 S13: 0.3342 REMARK 3 S21: 0.3216 S22: -0.1209 S23: 0.2239 REMARK 3 S31: -0.5798 S32: -0.6325 S33: 0.1355 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.5124 -5.2559 23.9722 REMARK 3 T TENSOR REMARK 3 T11: 0.3496 T22: 0.7996 REMARK 3 T33: 0.4578 T12: -0.0562 REMARK 3 T13: 0.1615 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 3.5246 L22: 2.8378 REMARK 3 L33: 4.2017 L12: -0.3788 REMARK 3 L13: -0.4038 L23: 0.2648 REMARK 3 S TENSOR REMARK 3 S11: -0.1432 S12: -0.3509 S13: -0.4188 REMARK 3 S21: 0.5053 S22: -0.0527 S23: 0.8267 REMARK 3 S31: 0.4591 S32: -1.1850 S33: 0.2124 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1212 -5.8531 18.8999 REMARK 3 T TENSOR REMARK 3 T11: 0.1721 T22: 0.2073 REMARK 3 T33: 0.1714 T12: -0.0286 REMARK 3 T13: 0.0309 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.7599 L22: 3.3039 REMARK 3 L33: 4.2999 L12: -0.4843 REMARK 3 L13: 0.0539 L23: 0.3692 REMARK 3 S TENSOR REMARK 3 S11: -0.0914 S12: -0.1857 S13: -0.1591 REMARK 3 S21: 0.3299 S22: -0.0595 S23: 0.1120 REMARK 3 S31: 0.3101 S32: -0.1948 S33: 0.1072 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 174 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1313 -13.1771 46.9519 REMARK 3 T TENSOR REMARK 3 T11: 0.5520 T22: 0.5239 REMARK 3 T33: 0.2719 T12: 0.0461 REMARK 3 T13: 0.0351 T23: 0.1166 REMARK 3 L TENSOR REMARK 3 L11: 3.3764 L22: 4.3136 REMARK 3 L33: 8.4242 L12: -0.1160 REMARK 3 L13: -0.9960 L23: -2.8309 REMARK 3 S TENSOR REMARK 3 S11: 0.1136 S12: -0.4262 S13: -0.2900 REMARK 3 S21: 0.2334 S22: -0.4253 S23: -0.2466 REMARK 3 S31: 0.3385 S32: 0.9590 S33: 0.1889 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 234 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8610 -17.8318 38.6578 REMARK 3 T TENSOR REMARK 3 T11: 0.7339 T22: 0.9942 REMARK 3 T33: 0.5015 T12: 0.2577 REMARK 3 T13: 0.1543 T23: 0.3241 REMARK 3 L TENSOR REMARK 3 L11: 1.5036 L22: 0.6932 REMARK 3 L33: 1.4412 L12: -0.5685 REMARK 3 L13: 1.1963 L23: 0.0514 REMARK 3 S TENSOR REMARK 3 S11: -0.1859 S12: 0.3617 S13: -0.0199 REMARK 3 S21: -0.0599 S22: -0.6498 S23: -0.5225 REMARK 3 S31: 1.0138 S32: 1.6286 S33: 0.4816 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 261 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4270 -15.3065 40.6744 REMARK 3 T TENSOR REMARK 3 T11: 0.6595 T22: 0.5384 REMARK 3 T33: 0.3087 T12: 0.0442 REMARK 3 T13: 0.0381 T23: 0.1062 REMARK 3 L TENSOR REMARK 3 L11: 3.1729 L22: 3.4492 REMARK 3 L33: 7.0734 L12: -0.9188 REMARK 3 L13: -0.9451 L23: -1.4941 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: 0.1324 S13: -0.2542 REMARK 3 S21: -0.2399 S22: -0.4357 S23: -0.4080 REMARK 3 S31: 1.0756 S32: 1.0119 S33: 0.6409 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58720 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 2.193 REMARK 200 R MERGE (I) : 0.02300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.21 REMARK 200 R MERGE FOR SHELL (I) : 0.34900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 2EJC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 21 MG/ML WAS MIXED 1:1 (0.4 REMARK 280 UL PROTEIN AND 0.4 UL PRECIPITANT) WITH 12.5% W/V PEG 1000, 12.5% REMARK 280 W/V PEG3350, 12.5% V/V MPD, 0.03 M EACH SODIUM NITRATE, REMARK 280 DISODIUM HYDROGEN PHOSPHATE, AND AMMONIUM SULFATE, AND 0.1 M MES/ REMARK 280 IMIDAZOLE PH 7.5 (MORPHEUS C8). CRYO: DIRECT. TRAY: 320104C8: REMARK 280 PIN: IFL7-5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 ALA A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 LYS A 283 REMARK 465 GLY A 284 REMARK 465 MET B -9 REMARK 465 ALA B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 MET B -1 REMARK 465 LYS B 283 REMARK 465 GLY B 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 65 CG OD1 OD2 REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 LEU A 120 CG CD1 CD2 REMARK 470 LEU A 193 CG CD1 CD2 REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 215 CG CD OE1 NE2 REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ASP A 258 CG OD1 OD2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 GLU A 271 CG CD OE1 OE2 REMARK 470 ARG B 2 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 65 CG OD1 OD2 REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 LEU B 120 CG CD1 CD2 REMARK 470 ARG B 187 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 193 CG CD1 CD2 REMARK 470 LYS B 197 CG CD CE NZ REMARK 470 LYS B 200 CG CD CE NZ REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 ARG B 214 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 215 CG CD OE1 NE2 REMARK 470 LYS B 222 CG CD CE NZ REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 GLU B 248 CG CD OE1 OE2 REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 ASP B 258 CG OD1 OD2 REMARK 470 LYS B 259 CG CD CE NZ REMARK 470 GLU B 271 CG CD OE1 OE2 REMARK 470 GLN B 281 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 110 O HOH A 401 2.09 REMARK 500 O HOH A 573 O HOH B 549 2.12 REMARK 500 OE1 GLU B 110 O HOH B 401 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 72.70 -153.40 REMARK 500 GLU A 104 15.38 -149.84 REMARK 500 LEU A 116 -120.49 58.67 REMARK 500 ASP B 65 -0.99 63.03 REMARK 500 ASP B 74 72.18 -152.89 REMARK 500 GLU B 104 18.07 -152.84 REMARK 500 LEU B 116 -116.41 58.00 REMARK 500 LEU B 250 13.87 58.29 REMARK 500 REMARK 500 REMARK: NULL DBREF 7TOT A 1 284 UNP Q6G456 PANC_BARHE 1 284 DBREF 7TOT B 1 284 UNP Q6G456 PANC_BARHE 1 284 SEQADV 7TOT MET A -9 UNP Q6G456 INITIATING METHIONINE SEQADV 7TOT ALA A -8 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT HIS A -7 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT HIS A -6 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT HIS A -5 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT HIS A -4 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT HIS A -3 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT HIS A -2 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT MET A -1 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT LYS A 0 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT MET B -9 UNP Q6G456 INITIATING METHIONINE SEQADV 7TOT ALA B -8 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT HIS B -7 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT HIS B -6 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT HIS B -5 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT HIS B -4 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT HIS B -3 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT HIS B -2 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT MET B -1 UNP Q6G456 EXPRESSION TAG SEQADV 7TOT LYS B 0 UNP Q6G456 EXPRESSION TAG SEQRES 1 A 294 MET ALA HIS HIS HIS HIS HIS HIS MET LYS MET ARG VAL SEQRES 2 A 294 LEU LYS THR ILE PRO GLU VAL ARG GLN SER ILE THR GLU SEQRES 3 A 294 GLU ARG ARG LEU GLY PHE SER ILE GLY LEU VAL PRO THR SEQRES 4 A 294 MET GLY ALA LEU HIS ASN GLY HIS ILE ALA LEU VAL ARG SEQRES 5 A 294 ARG ALA ARG ALA MET CYS ASP ARG VAL LEU VAL SER ILE SEQRES 6 A 294 PHE VAL ASN PRO LYS GLN PHE GLY PRO ASP GLU ASP PHE SEQRES 7 A 294 ASP LYS TYR PRO ARG ASP LEU LYS GLY ASP CYS ALA LEU SEQRES 8 A 294 LEU GLU GLU ALA GLY VAL GLU TYR LEU PHE THR PRO SER SEQRES 9 A 294 VAL GLU GLU MET TRP PRO PRO GLY ASN GLU THR ILE VAL SEQRES 10 A 294 ASN VAL GLU LYS LEU SER ARG MET LEU ILE GLY LYS LEU SEQRES 11 A 294 ARG PRO GLY HIS PHE CYS GLY VAL THR SER VAL VAL ALA SEQRES 12 A 294 LYS LEU PHE ASN ILE VAL GLN PRO ASP LYS ALA PHE PHE SEQRES 13 A 294 GLY GLU LYS ASP PHE GLN GLN ILE LEU ILE VAL ARG ARG SEQRES 14 A 294 MET VAL GLU ASP LEU ALA PHE PRO ILE GLU VAL VAL GLY SEQRES 15 A 294 VAL PRO VAL LEU ARG GLU ALA ASP GLY VAL ALA SER SER SEQRES 16 A 294 SER ARG ASN GLN PHE LEU THR LEU GLU ASP ARG LYS ALA SEQRES 17 A 294 ALA LYS ILE ILE PRO GLU SER GLY LYS ALA ALA GLU ASN SEQRES 18 A 294 LEU TYR ARG GLN GLY GLU ARG SER VAL ASP LYS LEU CYS SEQRES 19 A 294 LYS ILE VAL ARG ASP ILE LEU GLN GLN GLU SER ARG ALA SEQRES 20 A 294 ILE ILE GLU SER ILE ASP LEU ARG ASP MET GLU THR LEU SEQRES 21 A 294 SER VAL VAL LYS GLY ARG LEU ASP LYS SER ALA VAL LEU SEQRES 22 A 294 LEU LEU THR VAL ARG PHE GLY GLU ILE ARG LEU ILE ASP SEQRES 23 A 294 GLN TYR ILE LEU GLN GLU LYS GLY SEQRES 1 B 294 MET ALA HIS HIS HIS HIS HIS HIS MET LYS MET ARG VAL SEQRES 2 B 294 LEU LYS THR ILE PRO GLU VAL ARG GLN SER ILE THR GLU SEQRES 3 B 294 GLU ARG ARG LEU GLY PHE SER ILE GLY LEU VAL PRO THR SEQRES 4 B 294 MET GLY ALA LEU HIS ASN GLY HIS ILE ALA LEU VAL ARG SEQRES 5 B 294 ARG ALA ARG ALA MET CYS ASP ARG VAL LEU VAL SER ILE SEQRES 6 B 294 PHE VAL ASN PRO LYS GLN PHE GLY PRO ASP GLU ASP PHE SEQRES 7 B 294 ASP LYS TYR PRO ARG ASP LEU LYS GLY ASP CYS ALA LEU SEQRES 8 B 294 LEU GLU GLU ALA GLY VAL GLU TYR LEU PHE THR PRO SER SEQRES 9 B 294 VAL GLU GLU MET TRP PRO PRO GLY ASN GLU THR ILE VAL SEQRES 10 B 294 ASN VAL GLU LYS LEU SER ARG MET LEU ILE GLY LYS LEU SEQRES 11 B 294 ARG PRO GLY HIS PHE CYS GLY VAL THR SER VAL VAL ALA SEQRES 12 B 294 LYS LEU PHE ASN ILE VAL GLN PRO ASP LYS ALA PHE PHE SEQRES 13 B 294 GLY GLU LYS ASP PHE GLN GLN ILE LEU ILE VAL ARG ARG SEQRES 14 B 294 MET VAL GLU ASP LEU ALA PHE PRO ILE GLU VAL VAL GLY SEQRES 15 B 294 VAL PRO VAL LEU ARG GLU ALA ASP GLY VAL ALA SER SER SEQRES 16 B 294 SER ARG ASN GLN PHE LEU THR LEU GLU ASP ARG LYS ALA SEQRES 17 B 294 ALA LYS ILE ILE PRO GLU SER GLY LYS ALA ALA GLU ASN SEQRES 18 B 294 LEU TYR ARG GLN GLY GLU ARG SER VAL ASP LYS LEU CYS SEQRES 19 B 294 LYS ILE VAL ARG ASP ILE LEU GLN GLN GLU SER ARG ALA SEQRES 20 B 294 ILE ILE GLU SER ILE ASP LEU ARG ASP MET GLU THR LEU SEQRES 21 B 294 SER VAL VAL LYS GLY ARG LEU ASP LYS SER ALA VAL LEU SEQRES 22 B 294 LEU LEU THR VAL ARG PHE GLY GLU ILE ARG LEU ILE ASP SEQRES 23 B 294 GLN TYR ILE LEU GLN GLU LYS GLY HET MPD A 301 8 HET MPD A 302 8 HET NO3 A 303 4 HET SO4 A 304 5 HET NO3 A 305 4 HET NO3 A 306 4 HET NO3 A 307 4 HET MPD B 301 8 HET MPD B 302 8 HET NO3 B 303 4 HET SO4 B 304 5 HET NO3 B 305 4 HET NO3 B 306 4 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM NO3 NITRATE ION HETNAM SO4 SULFATE ION FORMUL 3 MPD 4(C6 H14 O2) FORMUL 5 NO3 7(N O3 1-) FORMUL 6 SO4 2(O4 S 2-) FORMUL 16 HOH *373(H2 O) HELIX 1 AA1 THR A 6 LEU A 20 1 15 HELIX 2 AA2 HIS A 34 CYS A 48 1 15 HELIX 3 AA3 ASN A 58 PHE A 62 5 5 HELIX 4 AA4 ASP A 74 ALA A 85 1 12 HELIX 5 AA5 SER A 94 TRP A 99 1 6 HELIX 6 AA6 LYS A 111 MET A 115 5 5 HELIX 7 AA7 LEU A 116 ARG A 121 1 6 HELIX 8 AA8 GLY A 123 GLN A 140 1 18 HELIX 9 AA9 ASP A 150 ALA A 165 1 16 HELIX 10 AB1 SER A 185 LEU A 191 5 7 HELIX 11 AB2 THR A 192 ALA A 199 1 8 HELIX 12 AB3 LYS A 200 GLN A 215 1 16 HELIX 13 AB4 SER A 219 GLN A 233 1 15 HELIX 14 AB5 THR B 6 LEU B 20 1 15 HELIX 15 AB6 HIS B 34 CYS B 48 1 15 HELIX 16 AB7 ASN B 58 PHE B 62 5 5 HELIX 17 AB8 ASP B 67 TYR B 71 5 5 HELIX 18 AB9 ASP B 74 ALA B 85 1 12 HELIX 19 AC1 SER B 94 TRP B 99 1 6 HELIX 20 AC2 LYS B 111 MET B 115 5 5 HELIX 21 AC3 LEU B 116 ARG B 121 1 6 HELIX 22 AC4 GLY B 123 GLN B 140 1 18 HELIX 23 AC5 ASP B 150 ALA B 165 1 16 HELIX 24 AC6 SER B 185 LEU B 191 5 7 HELIX 25 AC7 THR B 192 ALA B 199 1 8 HELIX 26 AC8 LYS B 200 GLN B 215 1 16 HELIX 27 AC9 SER B 219 GLU B 234 1 16 SHEET 1 AA1 6 ARG A 2 LEU A 4 0 SHEET 2 AA1 6 TYR A 89 PHE A 91 1 O LEU A 90 N LEU A 4 SHEET 3 AA1 6 ARG A 50 ILE A 55 1 N VAL A 53 O PHE A 91 SHEET 4 AA1 6 ILE A 24 THR A 29 1 N GLY A 25 O LEU A 52 SHEET 5 AA1 6 LYS A 143 GLY A 147 1 O LYS A 143 N LEU A 26 SHEET 6 AA1 6 GLU A 169 VAL A 173 1 O VAL A 171 N ALA A 144 SHEET 1 AA2 2 THR A 105 VAL A 109 0 SHEET 2 AA2 2 THR B 105 VAL B 109 -1 O ILE B 106 N ASN A 108 SHEET 1 AA3 3 ALA A 237 ASP A 246 0 SHEET 2 AA3 3 ALA A 261 PHE A 269 -1 O VAL A 262 N ARG A 245 SHEET 3 AA3 3 ILE A 272 LEU A 280 -1 O LEU A 280 N ALA A 261 SHEET 1 AA4 6 ARG B 2 LEU B 4 0 SHEET 2 AA4 6 TYR B 89 PHE B 91 1 O LEU B 90 N LEU B 4 SHEET 3 AA4 6 ARG B 50 ILE B 55 1 N VAL B 53 O PHE B 91 SHEET 4 AA4 6 ILE B 24 THR B 29 1 N GLY B 25 O LEU B 52 SHEET 5 AA4 6 LYS B 143 GLY B 147 1 O LYS B 143 N LEU B 26 SHEET 6 AA4 6 GLU B 169 VAL B 173 1 O VAL B 171 N ALA B 144 SHEET 1 AA5 3 ILE B 238 ASP B 246 0 SHEET 2 AA5 3 ALA B 261 PHE B 269 -1 O VAL B 262 N ARG B 245 SHEET 3 AA5 3 ILE B 272 LEU B 280 -1 O TYR B 278 N LEU B 263 CRYST1 45.820 51.260 78.650 108.90 99.37 90.60 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021825 0.000229 0.003895 0.00000 SCALE2 0.000000 0.019509 0.006821 0.00000 SCALE3 0.000000 0.000000 0.013651 0.00000