HEADER IMMUNE SYSTEM/VIRAL PROTEIN 24-JAN-22 7TOW TITLE ANTIBODY DH1058 FAB FRAGMENT BOUND TO SARS-COV-2 FUSION PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DH1058 FAB HEAVY CHAIN; COMPND 3 CHAIN: H, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DH1058 FAB LIGHT CHAIN; COMPND 7 CHAIN: L, B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE PROTEIN S2; COMPND 11 CHAIN: E, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 14 2; SOURCE 15 ORGANISM_TAXID: 2697049 KEYWDS ANTIBODY, FAB FRAGMENT, IMMUNE SYSTEM, IMMUNE SYSTEM-VIRAL PROTEIN KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.GOBEIL,P.ACHARYA REVDAT 3 25-OCT-23 7TOW 1 REMARK REVDAT 2 12-APR-23 7TOW 1 JRNL REVDAT 1 16-FEB-22 7TOW 0 JRNL AUTH S.M.GOBEIL,R.HENDERSON,V.STALLS,K.JANOWSKA,X.HUANG,A.MAY, JRNL AUTH 2 M.SPEAKMAN,E.BEAUDOIN,K.MANNE,D.LI,R.PARKS,M.BARR,M.DEYTON, JRNL AUTH 3 M.MARTIN,K.MANSOURI,R.J.EDWARDS,A.EATON,D.C.MONTEFIORI, JRNL AUTH 4 G.D.SEMPOWSKI,K.O.SAUNDERS,K.WIEHE,W.WILLIAMS,B.KORBER, JRNL AUTH 5 B.F.HAYNES,P.ACHARYA JRNL TITL STRUCTURAL DIVERSITY OF THE SARS-COV-2 OMICRON SPIKE. JRNL REF MOL.CELL V. 82 2050 2022 JRNL REFN ISSN 1097-2765 JRNL PMID 35447081 JRNL DOI 10.1016/J.MOLCEL.2022.03.028 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 48438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2100 - 5.1800 0.92 3371 146 0.1518 0.1702 REMARK 3 2 5.1800 - 4.1200 0.93 3363 143 0.1219 0.1666 REMARK 3 3 4.1200 - 3.6000 0.96 3418 147 0.1448 0.2017 REMARK 3 4 3.6000 - 3.2700 0.96 3489 147 0.1651 0.2583 REMARK 3 5 3.2700 - 3.0300 0.93 3288 149 0.1827 0.2549 REMARK 3 6 3.0300 - 2.8500 0.83 2936 131 0.1857 0.2493 REMARK 3 7 2.8500 - 2.7100 0.91 3234 141 0.2024 0.2646 REMARK 3 8 2.7100 - 2.5900 0.93 3313 135 0.2057 0.3086 REMARK 3 9 2.5900 - 2.4900 0.93 3336 148 0.1998 0.2987 REMARK 3 10 2.4900 - 2.4100 0.94 3323 141 0.1906 0.2813 REMARK 3 11 2.4100 - 2.3300 0.95 3378 144 0.1866 0.2748 REMARK 3 12 2.3300 - 2.2700 0.94 3377 145 0.1790 0.2604 REMARK 3 13 2.2700 - 2.2100 0.94 3365 139 0.1732 0.2677 REMARK 3 14 2.2100 - 2.1500 0.92 3249 142 0.1676 0.2504 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.264 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.199 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7392 REMARK 3 ANGLE : 0.943 10038 REMARK 3 CHIRALITY : 0.059 1112 REMARK 3 PLANARITY : 0.008 1294 REMARK 3 DIHEDRAL : 15.202 2666 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TOW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48438 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 39.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 5.590 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 22.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GGU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3000, 100MM TRIS BASE/HCL PH REMARK 280 7.0, 200MM CALCIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.39400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 237 REMARK 465 CYS L 215 REMARK 465 ASP A 236 REMARK 465 LYS A 237 REMARK 465 CYS B 215 REMARK 465 ASP E 808 REMARK 465 PRO E 809 REMARK 465 SER E 810 REMARK 465 LYS E 811 REMARK 465 THR E 827 REMARK 465 LEU E 828 REMARK 465 ALA E 829 REMARK 465 ASP E 830 REMARK 465 ALA E 831 REMARK 465 GLY E 832 REMARK 465 PHE E 833 REMARK 465 ASP D 808 REMARK 465 PRO D 809 REMARK 465 SER D 810 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 88 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 54 O HOH A 401 2.06 REMARK 500 OE1 GLU L 106 OH TYR L 174 2.11 REMARK 500 OG SER L 12 OE2 GLU L 106 2.17 REMARK 500 O HOH H 600 O HOH H 617 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG H 16 -167.57 -78.07 REMARK 500 ALA H 110 -139.64 48.86 REMARK 500 TYR H 115 -42.16 79.90 REMARK 500 SER H 149 11.94 -61.20 REMARK 500 THR H 150 172.18 -54.69 REMARK 500 SER H 151 -76.47 63.85 REMARK 500 THR H 179 -31.89 -131.73 REMARK 500 ASP L 30 -117.36 59.51 REMARK 500 ALA L 51 -39.19 69.48 REMARK 500 GLU L 68 -88.49 57.85 REMARK 500 ALA L 84 178.44 174.00 REMARK 500 ALA A 110 -139.90 53.73 REMARK 500 TYR A 115 -47.79 69.68 REMARK 500 SER A 149 -46.54 -130.13 REMARK 500 THR A 150 179.65 51.00 REMARK 500 SER A 151 -63.48 36.09 REMARK 500 ASP A 163 65.44 63.28 REMARK 500 ILE B 2 97.62 55.36 REMARK 500 ASP B 30 -114.92 52.70 REMARK 500 ALA B 51 -35.37 73.37 REMARK 500 GLU B 68 -95.87 66.33 REMARK 500 ALA B 84 -178.04 177.36 REMARK 500 SER E 813 130.50 -171.19 REMARK 500 SER E 813 133.78 -171.19 REMARK 500 PRO D 812 163.09 -45.44 REMARK 500 LYS D 814 107.92 26.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG H 67 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L 460 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH E 915 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH D 933 DISTANCE = 5.82 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA H 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER H 52 OG REMARK 620 2 HOH E 903 O 66.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 431 O REMARK 620 2 HOH A 517 O 112.7 REMARK 620 N 1 DBREF 7TOW H 1 237 PDB 7TOW 7TOW 1 237 DBREF 7TOW L 1 215 PDB 7TOW 7TOW 1 215 DBREF 7TOW A 1 237 PDB 7TOW 7TOW 1 237 DBREF 7TOW B 1 215 PDB 7TOW 7TOW 1 215 DBREF 7TOW E 808 833 UNP P0DTC2 SPIKE_SARS2 808 833 DBREF 7TOW D 808 833 UNP P0DTC2 SPIKE_SARS2 808 833 SEQRES 1 H 237 GLN VAL GLN LEU VAL GLN SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 237 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 237 PHE ASN PHE GLY ASP PHE GLY MET HIS TRP VAL ARG GLN SEQRES 4 H 237 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA VAL ILE SER SEQRES 5 H 237 TYR GLU GLY ARG ASN LYS ASN HIS ALA ASP SER VAL ARG SEQRES 6 H 237 GLY ARG PHE THR ILE SER ARG ASP ASN SER ARG ASN MET SEQRES 7 H 237 LEU TYR LEU GLN MET ASN SER LEU ARG ARG GLY ASP THR SEQRES 8 H 237 ALA VAL TYR TYR CYS ALA LYS GLU ASN ARG ASP ARG ASN SEQRES 9 H 237 TYR ASP SER TRP SER ALA SER TYR SER ASP TYR TYR TYR SEQRES 10 H 237 GLY MET ASP VAL TRP GLY GLN GLY THR THR VAL THR VAL SEQRES 11 H 237 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 H 237 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 H 237 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 H 237 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 H 237 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 H 237 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 H 237 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 H 237 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 19 H 237 CYS ASP LYS SEQRES 1 L 215 ASP ILE VAL MET THR GLN SER PRO SER PHE LEU SER ALA SEQRES 2 L 215 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 215 GLN GLY ILE ASP ARG TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 215 PRO GLY SER ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 L 215 THR LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 215 GLY SER GLU THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 215 GLN PRO ASP ASP PHE ALA THR TYR TYR CYS GLN GLN LEU SEQRES 8 L 215 SER THR TYR PRO THR ILE THR PHE GLY GLN GLY THR ARG SEQRES 9 L 215 LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 A 237 GLN VAL GLN LEU VAL GLN SER GLY GLY GLY VAL VAL GLN SEQRES 2 A 237 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 237 PHE ASN PHE GLY ASP PHE GLY MET HIS TRP VAL ARG GLN SEQRES 4 A 237 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA VAL ILE SER SEQRES 5 A 237 TYR GLU GLY ARG ASN LYS ASN HIS ALA ASP SER VAL ARG SEQRES 6 A 237 GLY ARG PHE THR ILE SER ARG ASP ASN SER ARG ASN MET SEQRES 7 A 237 LEU TYR LEU GLN MET ASN SER LEU ARG ARG GLY ASP THR SEQRES 8 A 237 ALA VAL TYR TYR CYS ALA LYS GLU ASN ARG ASP ARG ASN SEQRES 9 A 237 TYR ASP SER TRP SER ALA SER TYR SER ASP TYR TYR TYR SEQRES 10 A 237 GLY MET ASP VAL TRP GLY GLN GLY THR THR VAL THR VAL SEQRES 11 A 237 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 A 237 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 A 237 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 A 237 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 A 237 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 A 237 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 A 237 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 A 237 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 19 A 237 CYS ASP LYS SEQRES 1 B 215 ASP ILE VAL MET THR GLN SER PRO SER PHE LEU SER ALA SEQRES 2 B 215 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 B 215 GLN GLY ILE ASP ARG TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 B 215 PRO GLY SER ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 B 215 THR LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 B 215 GLY SER GLU THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 B 215 GLN PRO ASP ASP PHE ALA THR TYR TYR CYS GLN GLN LEU SEQRES 8 B 215 SER THR TYR PRO THR ILE THR PHE GLY GLN GLY THR ARG SEQRES 9 B 215 LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 B 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 B 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 B 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 B 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 B 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 B 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 B 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 B 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 E 26 ASP PRO SER LYS PRO SER LYS ARG SER PHE ILE GLU ASP SEQRES 2 E 26 LEU LEU PHE ASN LYS VAL THR LEU ALA ASP ALA GLY PHE SEQRES 1 D 26 ASP PRO SER LYS PRO SER LYS ARG SER PHE ILE GLU ASP SEQRES 2 D 26 LEU LEU PHE ASN LYS VAL THR LEU ALA ASP ALA GLY PHE HET CA H 301 1 HET CA H 302 1 HET PO4 H 303 5 HET CA A 301 1 HET PO4 A 302 5 HETNAM CA CALCIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 7 CA 3(CA 2+) FORMUL 9 PO4 2(O4 P 3-) FORMUL 12 HOH *793(H2 O) HELIX 1 AA1 ASN H 28 PHE H 32 5 5 HELIX 2 AA2 ASN H 74 ARG H 76 5 3 HELIX 3 AA3 ARG H 87 THR H 91 5 5 HELIX 4 AA4 SER H 109 SER H 113 5 5 HELIX 5 AA5 SER H 175 ALA H 177 5 3 HELIX 6 AA6 SER H 206 LEU H 208 5 3 HELIX 7 AA7 GLN L 79 PHE L 83 5 5 HELIX 8 AA8 SER L 122 LYS L 127 1 6 HELIX 9 AA9 LYS L 184 LYS L 189 1 6 HELIX 10 AB1 ASN A 28 PHE A 32 5 5 HELIX 11 AB2 ARG A 87 THR A 91 5 5 HELIX 12 AB3 SER A 109 SER A 113 5 5 HELIX 13 AB4 SER A 175 ALA A 177 5 3 HELIX 14 AB5 SER A 206 LEU A 208 5 3 HELIX 15 AB6 LYS A 220 ASN A 223 5 4 HELIX 16 AB7 GLN B 79 PHE B 83 5 5 HELIX 17 AB8 SER B 122 LYS B 127 1 6 HELIX 18 AB9 LYS B 184 GLU B 188 1 5 HELIX 19 AC1 LYS E 814 ASN E 824 1 11 HELIX 20 AC2 LYS D 814 ALA D 831 1 18 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA1 4 MET H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA1 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 126 VAL H 130 1 O THR H 127 N GLY H 10 SHEET 3 AA2 6 ALA H 92 GLU H 99 -1 N TYR H 94 O THR H 126 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 LYS H 58 HIS H 60 -1 O ASN H 59 N VAL H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 126 VAL H 130 1 O THR H 127 N GLY H 10 SHEET 3 AA3 4 ALA H 92 GLU H 99 -1 N TYR H 94 O THR H 126 SHEET 4 AA3 4 MET H 119 TRP H 122 -1 O VAL H 121 N LYS H 98 SHEET 1 AA4 4 SER H 139 LEU H 143 0 SHEET 2 AA4 4 THR H 154 TYR H 164 -1 O LEU H 160 N PHE H 141 SHEET 3 AA4 4 TYR H 195 PRO H 204 -1 O LEU H 197 N VAL H 161 SHEET 4 AA4 4 VAL H 182 THR H 184 -1 N HIS H 183 O VAL H 200 SHEET 1 AA5 4 SER H 139 LEU H 143 0 SHEET 2 AA5 4 THR H 154 TYR H 164 -1 O LEU H 160 N PHE H 141 SHEET 3 AA5 4 TYR H 195 PRO H 204 -1 O LEU H 197 N VAL H 161 SHEET 4 AA5 4 VAL H 188 LEU H 189 -1 N VAL H 188 O SER H 196 SHEET 1 AA6 3 THR H 170 TRP H 173 0 SHEET 2 AA6 3 TYR H 213 HIS H 219 -1 O ASN H 216 N SER H 172 SHEET 3 AA6 3 THR H 224 VAL H 230 -1 O VAL H 226 N VAL H 217 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 PHE L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 11 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 105 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA9 4 PHE L 10 ALA L 13 0 SHEET 2 AA9 4 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 11 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 105 SHEET 4 AA9 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 90 SHEET 1 AB1 4 SER L 115 PHE L 119 0 SHEET 2 AB1 4 THR L 130 PHE L 140 -1 O LEU L 136 N PHE L 117 SHEET 3 AB1 4 TYR L 174 SER L 183 -1 O LEU L 182 N ALA L 131 SHEET 4 AB1 4 SER L 160 VAL L 164 -1 N SER L 163 O SER L 177 SHEET 1 AB2 4 ALA L 154 LEU L 155 0 SHEET 2 AB2 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AB2 4 VAL L 192 THR L 198 -1 O THR L 198 N LYS L 146 SHEET 4 AB2 4 VAL L 206 ASN L 211 -1 O VAL L 206 N VAL L 197 SHEET 1 AB3 4 GLN A 3 SER A 7 0 SHEET 2 AB3 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 AB3 4 MET A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AB3 4 PHE A 68 ASP A 73 -1 N SER A 71 O TYR A 80 SHEET 1 AB4 6 GLY A 10 VAL A 12 0 SHEET 2 AB4 6 THR A 126 VAL A 130 1 O THR A 129 N GLY A 10 SHEET 3 AB4 6 ALA A 92 GLU A 99 -1 N TYR A 94 O THR A 126 SHEET 4 AB4 6 MET A 34 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AB4 6 LEU A 45 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AB4 6 LYS A 58 HIS A 60 -1 O ASN A 59 N VAL A 50 SHEET 1 AB5 4 GLY A 10 VAL A 12 0 SHEET 2 AB5 4 THR A 126 VAL A 130 1 O THR A 129 N GLY A 10 SHEET 3 AB5 4 ALA A 92 GLU A 99 -1 N TYR A 94 O THR A 126 SHEET 4 AB5 4 MET A 119 TRP A 122 -1 O VAL A 121 N LYS A 98 SHEET 1 AB6 4 SER A 139 LEU A 143 0 SHEET 2 AB6 4 THR A 154 TYR A 164 -1 O LEU A 160 N PHE A 141 SHEET 3 AB6 4 TYR A 195 PRO A 204 -1 O LEU A 197 N VAL A 161 SHEET 4 AB6 4 VAL A 182 THR A 184 -1 N HIS A 183 O VAL A 200 SHEET 1 AB7 4 SER A 139 LEU A 143 0 SHEET 2 AB7 4 THR A 154 TYR A 164 -1 O LEU A 160 N PHE A 141 SHEET 3 AB7 4 TYR A 195 PRO A 204 -1 O LEU A 197 N VAL A 161 SHEET 4 AB7 4 VAL A 188 LEU A 189 -1 N VAL A 188 O SER A 196 SHEET 1 AB8 3 THR A 170 TRP A 173 0 SHEET 2 AB8 3 ILE A 214 HIS A 219 -1 O ASN A 216 N SER A 172 SHEET 3 AB8 3 THR A 224 LYS A 229 -1 O VAL A 226 N VAL A 217 SHEET 1 AB9 4 MET B 4 SER B 7 0 SHEET 2 AB9 4 VAL B 19 ALA B 25 -1 O THR B 22 N SER B 7 SHEET 3 AB9 4 ASP B 70 ILE B 75 -1 O ILE B 75 N VAL B 19 SHEET 4 AB9 4 PHE B 62 SER B 67 -1 N SER B 63 O THR B 74 SHEET 1 AC1 6 PHE B 10 ALA B 13 0 SHEET 2 AC1 6 THR B 103 ILE B 107 1 O ARG B 104 N LEU B 11 SHEET 3 AC1 6 ALA B 84 GLN B 90 -1 N ALA B 84 O LEU B 105 SHEET 4 AC1 6 LEU B 33 GLN B 38 -1 N GLN B 38 O THR B 85 SHEET 5 AC1 6 LYS B 45 TYR B 49 -1 O LYS B 45 N GLN B 37 SHEET 6 AC1 6 THR B 53 LEU B 54 -1 O THR B 53 N TYR B 49 SHEET 1 AC2 4 PHE B 10 ALA B 13 0 SHEET 2 AC2 4 THR B 103 ILE B 107 1 O ARG B 104 N LEU B 11 SHEET 3 AC2 4 ALA B 84 GLN B 90 -1 N ALA B 84 O LEU B 105 SHEET 4 AC2 4 THR B 98 PHE B 99 -1 O THR B 98 N GLN B 90 SHEET 1 AC3 4 SER B 115 PHE B 119 0 SHEET 2 AC3 4 THR B 130 PHE B 140 -1 O LEU B 136 N PHE B 117 SHEET 3 AC3 4 TYR B 174 SER B 183 -1 O LEU B 182 N ALA B 131 SHEET 4 AC3 4 SER B 160 VAL B 164 -1 N SER B 163 O SER B 177 SHEET 1 AC4 4 ALA B 154 LEU B 155 0 SHEET 2 AC4 4 LYS B 146 VAL B 151 -1 N VAL B 151 O ALA B 154 SHEET 3 AC4 4 VAL B 192 THR B 198 -1 O GLU B 196 N GLN B 148 SHEET 4 AC4 4 VAL B 206 ASN B 211 -1 O LYS B 208 N CYS B 195 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.07 SSBOND 2 CYS H 159 CYS H 215 1555 1555 2.06 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.06 SSBOND 4 CYS L 135 CYS L 195 1555 1555 2.02 SSBOND 5 CYS A 22 CYS A 96 1555 1555 2.06 SSBOND 6 CYS A 159 CYS A 215 1555 1555 2.05 SSBOND 7 CYS B 23 CYS B 88 1555 1555 2.08 SSBOND 8 CYS B 135 CYS B 195 1555 1555 2.02 LINK OG SER H 52 CA CA H 301 1555 1555 3.06 LINK CA CA H 301 O HOH E 903 1555 1555 3.00 LINK CA CA H 302 O HOH H 499 1555 1555 3.08 LINK CA CA A 301 O HOH A 431 1555 1555 3.17 LINK CA CA A 301 O HOH A 517 1555 1555 3.19 CISPEP 1 PHE H 165 PRO H 166 0 -9.30 CISPEP 2 GLU H 167 PRO H 168 0 -3.35 CISPEP 3 SER L 7 PRO L 8 0 -5.78 CISPEP 4 TYR L 94 PRO L 95 0 11.93 CISPEP 5 TYR L 141 PRO L 142 0 0.06 CISPEP 6 PHE A 165 PRO A 166 0 -5.31 CISPEP 7 GLU A 167 PRO A 168 0 0.10 CISPEP 8 SER B 7 PRO B 8 0 -7.32 CISPEP 9 TYR B 94 PRO B 95 0 8.62 CISPEP 10 TYR B 141 PRO B 142 0 3.75 CRYST1 53.916 76.788 119.786 90.00 100.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018547 0.000000 0.003556 0.00000 SCALE2 0.000000 0.013023 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008500 0.00000