HEADER IMMUNE SYSTEM 26-JAN-22 7TPS TITLE CRYSTAL STRUCTURE OF ALPN-202 (ENGINEERED CD80 VIGD) IN COMPLEX WITH TITLE 2 PD-L1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-LYMPHOCYTE ACTIVATION ANTIGEN CD80; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: ACTIVATION B7-1 ANTIGEN,BB1,CTLA-4 COUNTER-RECEPTOR B7.1,B7; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROGRAMMED CELL DEATH 1 LIGAND 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: PD-L1,PDCD1 LIGAND 1,PROGRAMMED DEATH LIGAND 1,HPD-L1,B7 COMPND 11 HOMOLOG 1,B7-H1; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: PROGRAMMED CELL DEATH 1 LIGAND 1; COMPND 15 CHAIN: D; COMPND 16 SYNONYM: PD-L1,PDCD1 LIGAND 1,PROGRAMMED DEATH LIGAND 1,HPD-L1,B7 COMPND 17 HOMOLOG 1,B7-H1; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD80, CD28LG, CD28LG1, LAB7; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CD274, B7H1, PDCD1L1, PDCD1LG1, PDL1; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: CD274, B7H1, PDCD1L1, PDCD1LG1, PDL1; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CO-STIMULATORY, IG-LIKE, V-TYPE, T-CELL, PROLIFERATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.W.DEMONTE,M.F.MAURER,M.AKUTSU,Y.R.KIMBUNG,D.T.LOGAN,B.WALSE REVDAT 3 18-OCT-23 7TPS 1 REMARK REVDAT 2 20-APR-22 7TPS 1 JRNL REVDAT 1 16-MAR-22 7TPS 0 JRNL AUTH M.F.MAURER,K.E.LEWIS,J.L.KUIJPER,D.ARDOUREL,C.J.GUDGEON, JRNL AUTH 2 S.CHANDRASEKARAN,S.L.MUDRI,K.N.KLEIST,C.NAVAS,M.F.WOLFSON, JRNL AUTH 3 M.W.RIXON,R.SWANSON,S.R.DILLON,S.D.LEVIN,Y.R.KIMBUNG, JRNL AUTH 4 M.AKUTSU,D.T.LOGAN,B.WALSE,K.M.SWIDEREK,S.L.PENG JRNL TITL THE ENGINEERED CD80 VARIANT FUSION THERAPEUTIC DAVOCETICEPT JRNL TITL 2 COMBINES CHECKPOINT ANTAGONISM WITH CONDITIONAL CD28 JRNL TITL 3 COSTIMULATION FOR ANTI-TUMOR IMMUNITY. JRNL REF NAT COMMUN V. 13 1790 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35379805 JRNL DOI 10.1038/S41467-022-29286-5 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.8 (11-DEC-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 19859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 991 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.17 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.59 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 406 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3799 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 386 REMARK 3 BIN R VALUE (WORKING SET) : 0.3841 REMARK 3 BIN FREE R VALUE : 0.3005 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.93 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 20 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5021 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 242 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 110.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.20710 REMARK 3 B22 (A**2) : -31.87550 REMARK 3 B33 (A**2) : 15.66840 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.480 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.469 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.895 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5373 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7310 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1973 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 884 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5373 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 781 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3760 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.82 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.44 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|35 - A|140 A|201 - A|201 } REMARK 3 ORIGIN FOR THE GROUP (A): -88.3143 -18.4564 1.2277 REMARK 3 T TENSOR REMARK 3 T11: -0.3637 T22: -0.0016 REMARK 3 T33: -0.0193 T12: 0.0202 REMARK 3 T13: -0.0743 T23: -0.1024 REMARK 3 L TENSOR REMARK 3 L11: 5.1788 L22: 7.0713 REMARK 3 L33: 4.4895 L12: 2.5776 REMARK 3 L13: -2.2527 L23: -2.6600 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: -0.0840 S13: 0.2878 REMARK 3 S21: 0.1323 S22: -0.0667 S23: 0.3889 REMARK 3 S31: 0.0055 S32: -0.2102 S33: 0.0885 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|19 - B|227 B|301 - B|302 } REMARK 3 ORIGIN FOR THE GROUP (A): -51.6804 -2.5749 2.2465 REMARK 3 T TENSOR REMARK 3 T11: -0.2251 T22: -0.1453 REMARK 3 T33: 0.0027 T12: 0.0268 REMARK 3 T13: 0.0601 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 6.6000 L22: 2.2784 REMARK 3 L33: 4.9047 L12: 2.4152 REMARK 3 L13: 4.3178 L23: 1.9620 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: 0.3081 S13: 0.0642 REMARK 3 S21: -0.0570 S22: 0.1003 S23: -0.1910 REMARK 3 S31: -0.1870 S32: 0.4240 S33: -0.0451 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|36 - C|140 C|201 - C|201 } REMARK 3 ORIGIN FOR THE GROUP (A): -84.4392 19.6248 -33.4857 REMARK 3 T TENSOR REMARK 3 T11: 0.2259 T22: -0.3402 REMARK 3 T33: -0.3591 T12: 0.5685 REMARK 3 T13: -0.4670 T23: -0.1388 REMARK 3 L TENSOR REMARK 3 L11: 3.4625 L22: 15.3529 REMARK 3 L33: 6.0600 L12: -1.5917 REMARK 3 L13: 0.8065 L23: -2.1519 REMARK 3 S TENSOR REMARK 3 S11: 0.2304 S12: -0.3809 S13: 0.2758 REMARK 3 S21: -2.5114 S22: -0.3987 S23: 1.2255 REMARK 3 S31: -1.1425 S32: -0.4772 S33: 0.1684 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|19 - D|227 D|301 - D|302 } REMARK 3 ORIGIN FOR THE GROUP (A): -52.3954 -1.6823 -36.0527 REMARK 3 T TENSOR REMARK 3 T11: -0.1034 T22: -0.1014 REMARK 3 T33: -0.0792 T12: -0.0410 REMARK 3 T13: -0.0473 T23: 0.1452 REMARK 3 L TENSOR REMARK 3 L11: 5.6585 L22: 1.2164 REMARK 3 L33: 5.7307 L12: -2.7528 REMARK 3 L13: -4.7777 L23: 2.6583 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: 0.0410 S13: 0.1721 REMARK 3 S21: 0.1793 S22: 0.0311 S23: -0.1527 REMARK 3 S31: -0.2406 S32: -0.0942 S33: -0.0539 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { D|303 - D|303 } REMARK 3 ORIGIN FOR THE GROUP (A): -63.8002 -0.6472 -16.0747 REMARK 3 T TENSOR REMARK 3 T11: -0.4030 T22: 0.3808 REMARK 3 T33: 0.2917 T12: -0.1944 REMARK 3 T13: -0.3645 T23: -0.1607 REMARK 3 L TENSOR REMARK 3 L11: 0.3111 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 1.9181 REMARK 3 L13: -3.3005 L23: 2.2739 REMARK 3 S TENSOR REMARK 3 S11: 0.2051 S12: -0.3306 S13: 0.1655 REMARK 3 S21: -1.1445 S22: 0.5318 S23: -1.3038 REMARK 3 S31: -0.4662 S32: -0.2268 S33: -0.7369 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|301 - A|310 B|401 - B|430 C|301 - C|302 } REMARK 3 ORIGIN FOR THE GROUP (A): -63.9813 -7.2605 -5.2296 REMARK 3 T TENSOR REMARK 3 T11: 0.3783 T22: -0.1966 REMARK 3 T33: 0.4625 T12: 0.0025 REMARK 3 T13: -0.1043 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: -0.6351 REMARK 3 L13: -0.4168 L23: 0.0280 REMARK 3 S TENSOR REMARK 3 S11: -0.1596 S12: -0.0894 S13: 0.0710 REMARK 3 S21: -0.0174 S22: 0.0982 S23: -0.0752 REMARK 3 S31: -0.0215 S32: 0.0213 S33: 0.0613 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TPS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000262743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19918 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 95.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.72200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1DR9, 5JDR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.03 M SODIUM NITRATE, 0.03 M SODIUM REMARK 280 PHOSPHATE DIBASIC, 0.03 M AMMONIUM SULFATE, 0.1 M SODIUM HEPES/ REMARK 280 MOPS (ACID), PH 7.5, 20% V/V GLYCEROL, 10% W/V PEG 4000, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.96400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.33750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.07600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.33750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.96400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.07600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL C 35 REMARK 465 GLU C 58 REMARK 465 LEU C 59 REMARK 465 GLU C 60 REMARK 465 SER C 78 REMARK 465 GLY C 79 REMARK 465 LYS C 123 REMARK 465 GLY C 124 REMARK 465 ALA C 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 123 -82.86 42.40 REMARK 500 LYS B 46 -79.18 62.52 REMARK 500 GLU B 60 -101.55 55.48 REMARK 500 GLN B 83 -7.10 74.22 REMARK 500 TYR B 118 85.23 -161.90 REMARK 500 PRO B 161 -155.38 -80.46 REMARK 500 ASP B 215 81.15 18.69 REMARK 500 ASN C 82 105.81 -160.88 REMARK 500 ASN C 98 28.87 44.03 REMARK 500 LYS D 46 -79.00 62.06 REMARK 500 GLU D 60 -136.79 60.11 REMARK 500 GLN D 83 -10.62 75.55 REMARK 500 TYR D 118 84.05 -161.31 REMARK 500 TYR D 134 54.07 -94.01 REMARK 500 PRO D 161 -154.32 -79.14 REMARK 500 ARG D 186 -71.25 -67.62 REMARK 500 ASP D 215 79.18 23.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 429 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B 430 DISTANCE = 6.58 ANGSTROMS DBREF 7TPS A 35 140 UNP P33681 CD80_HUMAN 35 140 DBREF 7TPS B 19 227 UNP Q9NZQ7 PD1L1_HUMAN 19 227 DBREF 7TPS C 35 140 UNP P33681 CD80_HUMAN 35 140 DBREF 7TPS D 19 227 UNP Q9NZQ7 PD1L1_HUMAN 19 227 SEQADV 7TPS TYR A 52 UNP P33681 HIS 52 ENGINEERED MUTATION SEQADV 7TPS GLU A 60 UNP P33681 ALA 60 ENGINEERED MUTATION SEQADV 7TPS ASP A 69 UNP P33681 GLU 69 ENGINEERED MUTATION SEQADV 7TPS LEU A 81 UNP P33681 MET 81 ENGINEERED MUTATION SEQADV 7TPS MET A 102 UNP P33681 VAL 102 ENGINEERED MUTATION SEQADV 7TPS GLY A 105 UNP P33681 ALA 105 ENGINEERED MUTATION SEQADV 7TPS GLY A 124 UNP P33681 ASP 124 ENGINEERED MUTATION SEQADV 7TPS TYR C 52 UNP P33681 HIS 52 ENGINEERED MUTATION SEQADV 7TPS GLU C 60 UNP P33681 ALA 60 ENGINEERED MUTATION SEQADV 7TPS ASP C 69 UNP P33681 GLU 69 ENGINEERED MUTATION SEQADV 7TPS LEU C 81 UNP P33681 MET 81 ENGINEERED MUTATION SEQADV 7TPS MET C 102 UNP P33681 VAL 102 ENGINEERED MUTATION SEQADV 7TPS GLY C 105 UNP P33681 ALA 105 ENGINEERED MUTATION SEQADV 7TPS GLY C 124 UNP P33681 ASP 124 ENGINEERED MUTATION SEQRES 1 A 106 VAL ILE HIS VAL THR LYS GLU VAL LYS GLU VAL ALA THR SEQRES 2 A 106 LEU SER CYS GLY TYR ASN VAL SER VAL GLU GLU LEU GLU SEQRES 3 A 106 GLN THR ARG ILE TYR TRP GLN LYS ASP LYS LYS MET VAL SEQRES 4 A 106 LEU THR MET MET SER GLY ASP LEU ASN ILE TRP PRO GLU SEQRES 5 A 106 TYR LYS ASN ARG THR ILE PHE ASP ILE THR ASN ASN LEU SEQRES 6 A 106 SER ILE MET ILE LEU GLY LEU ARG PRO SER ASP GLU GLY SEQRES 7 A 106 THR TYR GLU CYS VAL VAL LEU LYS TYR GLU LYS GLY ALA SEQRES 8 A 106 PHE LYS ARG GLU HIS LEU ALA GLU VAL THR LEU SER VAL SEQRES 9 A 106 LYS ALA SEQRES 1 B 209 PHE THR VAL THR VAL PRO LYS ASP LEU TYR VAL VAL GLU SEQRES 2 B 209 TYR GLY SER ASN MET THR ILE GLU CYS LYS PHE PRO VAL SEQRES 3 B 209 GLU LYS GLN LEU ASP LEU ALA ALA LEU ILE VAL TYR TRP SEQRES 4 B 209 GLU MET GLU ASP LYS ASN ILE ILE GLN PHE VAL HIS GLY SEQRES 5 B 209 GLU GLU ASP LEU LYS VAL GLN HIS SER SER TYR ARG GLN SEQRES 6 B 209 ARG ALA ARG LEU LEU LYS ASP GLN LEU SER LEU GLY ASN SEQRES 7 B 209 ALA ALA LEU GLN ILE THR ASP VAL LYS LEU GLN ASP ALA SEQRES 8 B 209 GLY VAL TYR ARG CYS MET ILE SER TYR GLY GLY ALA ASP SEQRES 9 B 209 TYR LYS ARG ILE TPO VAL LYS VAL ASN ALA PRO TYR ASN SEQRES 10 B 209 LYS ILE ASN GLN ARG ILE LEU VAL VAL ASP PRO VAL THR SEQRES 11 B 209 SER GLU HIS GLU LEU THR CYS GLN ALA GLU GLY TYR PRO SEQRES 12 B 209 LYS ALA GLU VAL ILE TRP THR SER SER ASP HIS GLN VAL SEQRES 13 B 209 LEU SER GLY LYS THR THR THR THR ASN SER LYS ARG GLU SEQRES 14 B 209 GLU LYS LEU PHE ASN VAL THR SER THR LEU ARG ILE ASN SEQRES 15 B 209 THR THR THR ASN GLU ILE PHE TYR CYS THR PHE ARG ARG SEQRES 16 B 209 LEU ASP PRO GLU GLU ASN HIS THR ALA GLU LEU VAL ILE SEQRES 17 B 209 PRO SEQRES 1 C 106 VAL ILE HIS VAL THR LYS GLU VAL LYS GLU VAL ALA THR SEQRES 2 C 106 LEU SER CYS GLY TYR ASN VAL SER VAL GLU GLU LEU GLU SEQRES 3 C 106 GLN THR ARG ILE TYR TRP GLN LYS ASP LYS LYS MET VAL SEQRES 4 C 106 LEU THR MET MET SER GLY ASP LEU ASN ILE TRP PRO GLU SEQRES 5 C 106 TYR LYS ASN ARG THR ILE PHE ASP ILE THR ASN ASN LEU SEQRES 6 C 106 SER ILE MET ILE LEU GLY LEU ARG PRO SER ASP GLU GLY SEQRES 7 C 106 THR TYR GLU CYS VAL VAL LEU LYS TYR GLU LYS GLY ALA SEQRES 8 C 106 PHE LYS ARG GLU HIS LEU ALA GLU VAL THR LEU SER VAL SEQRES 9 C 106 LYS ALA SEQRES 1 D 209 PHE THR VAL THR VAL PRO LYS ASP LEU TYR VAL VAL GLU SEQRES 2 D 209 TYR GLY SER ASN MET THR ILE GLU CYS LYS PHE PRO VAL SEQRES 3 D 209 GLU LYS GLN LEU ASP LEU ALA ALA LEU ILE VAL TYR TRP SEQRES 4 D 209 GLU MET GLU ASP LYS ASN ILE ILE GLN PHE VAL HIS GLY SEQRES 5 D 209 GLU GLU ASP LEU LYS VAL GLN HIS SER SER TYR ARG GLN SEQRES 6 D 209 ARG ALA ARG LEU LEU LYS ASP GLN LEU SER LEU GLY ASN SEQRES 7 D 209 ALA ALA LEU GLN ILE THR ASP VAL LYS LEU GLN ASP ALA SEQRES 8 D 209 GLY VAL TYR ARG CYS MET ILE SER TYR GLY GLY ALA ASP SEQRES 9 D 209 TYR LYS ARG ILE THR VAL LYS VAL ASN ALA PRO TYR ASN SEQRES 10 D 209 LYS ILE ASN GLN ARG ILE LEU VAL VAL ASP PRO VAL THR SEQRES 11 D 209 SER GLU HIS GLU LEU THR CYS GLN ALA GLU GLY TYR PRO SEQRES 12 D 209 LYS ALA GLU VAL ILE TRP THR SER SER ASP HIS GLN VAL SEQRES 13 D 209 LEU SER GLY LYS THR THR THR THR ASN SER LYS ARG GLU SEQRES 14 D 209 GLU LYS LEU PHE ASN VAL THR SER THR LEU ARG ILE ASN SEQRES 15 D 209 THR THR THR ASN GLU ILE PHE TYR CYS THR PHE ARG ARG SEQRES 16 D 209 LEU ASP PRO GLU GLU ASN HIS THR ALA GLU LEU VAL ILE SEQRES 17 D 209 PRO MODRES 7TPS TPO B 127 THR MODIFIED RESIDUE HET TPO B 127 11 HET NAG E 1 14 HET NAG E 2 14 HET FUC E 3 10 HET NAG F 1 14 HET NAG F 2 14 HET FUC F 3 10 HET NAG G 1 14 HET NAG G 2 14 HET FUC G 3 10 HET NAG H 1 14 HET NAG H 2 14 HET FUC H 3 10 HET NAG A 201 14 HET NAG B 301 14 HET NAG B 302 14 HET NAG C 201 14 HET NAG D 301 14 HET NAG D 302 14 HET GOL D 303 6 HETNAM TPO PHOSPHOTHREONINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN TPO PHOSPHONOTHREONINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 TPO C4 H10 N O6 P FORMUL 5 NAG 14(C8 H15 N O6) FORMUL 5 FUC 4(C6 H12 O5) FORMUL 15 GOL C3 H8 O3 FORMUL 16 HOH *53(H2 O) HELIX 1 AA1 VAL A 56 GLU A 60 5 5 HELIX 2 AA2 ARG A 107 GLU A 111 5 5 HELIX 3 AA3 ASP B 49 ALA B 52 5 4 HELIX 4 AA4 HIS B 78 ARG B 82 5 5 HELIX 5 AA5 LEU B 88 SER B 93 1 6 HELIX 6 AA6 LYS B 105 ALA B 109 5 5 HELIX 7 AA7 ARG C 107 GLU C 111 5 5 HELIX 8 AA8 ASP D 49 ALA D 52 5 4 HELIX 9 AA9 HIS D 78 ARG D 82 5 5 HELIX 10 AB1 LYS D 105 ALA D 109 5 5 SHEET 1 AA1 6 ILE A 36 GLU A 41 0 SHEET 2 AA1 6 PHE A 126 LYS A 139 1 O SER A 137 N LYS A 40 SHEET 3 AA1 6 GLY A 112 TYR A 121 -1 N GLY A 112 O LEU A 136 SHEET 4 AA1 6 THR A 62 LYS A 68 -1 N GLN A 67 O GLU A 115 SHEET 5 AA1 6 LYS A 71 MET A 77 -1 O MET A 76 N ILE A 64 SHEET 6 AA1 6 ASP A 80 ILE A 83 -1 O ASP A 80 N MET A 77 SHEET 1 AA2 3 ALA A 46 LEU A 48 0 SHEET 2 AA2 3 SER A 100 ILE A 103 -1 O ILE A 101 N LEU A 48 SHEET 3 AA2 3 THR A 91 ASP A 94 -1 N ILE A 92 O MET A 102 SHEET 1 AA312 LEU B 27 GLU B 31 0 SHEET 2 AA312 ALA B 121 ASN B 131 1 O ASN B 131 N VAL B 30 SHEET 3 AA312 GLY B 110 SER B 117 -1 N ILE B 116 O ASP B 122 SHEET 4 AA312 ILE B 54 MET B 59 -1 N ILE B 54 O SER B 117 SHEET 5 AA312 LYS B 62 VAL B 68 -1 O PHE B 67 N VAL B 55 SHEET 6 AA312 GLU B 71 ASP B 73 -1 O GLU B 71 N VAL B 68 SHEET 7 AA312 GLU D 71 ASP D 73 -1 O GLU D 72 N GLU B 72 SHEET 8 AA312 LYS D 62 VAL D 68 -1 N VAL D 68 O GLU D 71 SHEET 9 AA312 ILE D 54 MET D 59 -1 N VAL D 55 O PHE D 67 SHEET 10 AA312 GLY D 110 SER D 117 -1 O SER D 117 N ILE D 54 SHEET 11 AA312 ALA D 121 VAL D 130 -1 O VAL D 128 N GLY D 110 SHEET 12 AA312 LEU D 27 VAL D 30 1 N TYR D 28 O LYS D 129 SHEET 1 AA4 3 MET B 36 LYS B 41 0 SHEET 2 AA4 3 ASN B 96 ILE B 101 -1 O ALA B 97 N CYS B 40 SHEET 3 AA4 3 ALA B 85 LEU B 87 -1 N ARG B 86 O GLN B 100 SHEET 1 AA5 4 ASN B 138 ASP B 145 0 SHEET 2 AA5 4 GLU B 150 GLY B 159 -1 O GLN B 156 N ASN B 138 SHEET 3 AA5 4 PHE B 191 ASN B 200 -1 O LEU B 197 N LEU B 153 SHEET 4 AA5 4 LYS B 178 ASN B 183 -1 N THR B 180 O THR B 194 SHEET 1 AA6 4 VAL B 174 LEU B 175 0 SHEET 2 AA6 4 GLU B 164 THR B 168 -1 N TRP B 167 O LEU B 175 SHEET 3 AA6 4 ILE B 206 ARG B 213 -1 O THR B 210 N ILE B 166 SHEET 4 AA6 4 GLU B 218 VAL B 225 -1 O HIS B 220 N PHE B 211 SHEET 1 AA7 5 HIS C 37 GLU C 41 0 SHEET 2 AA7 5 ARG C 128 LYS C 139 1 O SER C 137 N LYS C 40 SHEET 3 AA7 5 GLY C 112 LEU C 119 -1 N TYR C 114 O VAL C 134 SHEET 4 AA7 5 ARG C 63 LYS C 68 -1 N GLN C 67 O GLU C 115 SHEET 5 AA7 5 LYS C 71 MET C 76 -1 O LYS C 71 N LYS C 68 SHEET 1 AA8 3 ALA C 46 LEU C 48 0 SHEET 2 AA8 3 SER C 100 ILE C 103 -1 O ILE C 101 N LEU C 48 SHEET 3 AA8 3 THR C 91 ASP C 94 -1 N ILE C 92 O MET C 102 SHEET 1 AA9 3 MET D 36 LYS D 41 0 SHEET 2 AA9 3 ASN D 96 ILE D 101 -1 O ILE D 101 N MET D 36 SHEET 3 AA9 3 ALA D 85 LEU D 88 -1 N ARG D 86 O GLN D 100 SHEET 1 AB1 4 ASN D 138 ASP D 145 0 SHEET 2 AB1 4 GLU D 150 GLY D 159 -1 O GLN D 156 N ASN D 138 SHEET 3 AB1 4 PHE D 191 ASN D 200 -1 O LEU D 197 N LEU D 153 SHEET 4 AB1 4 LYS D 178 ASN D 183 -1 N THR D 180 O THR D 194 SHEET 1 AB2 4 VAL D 174 LEU D 175 0 SHEET 2 AB2 4 ALA D 163 THR D 168 -1 N TRP D 167 O LEU D 175 SHEET 3 AB2 4 ILE D 206 ARG D 213 -1 O THR D 210 N ILE D 166 SHEET 4 AB2 4 GLU D 218 VAL D 225 -1 O LEU D 224 N PHE D 207 SSBOND 1 CYS A 50 CYS A 116 1555 1555 2.05 SSBOND 2 CYS B 40 CYS B 114 1555 1555 2.03 SSBOND 3 CYS B 155 CYS B 209 1555 1555 2.04 SSBOND 4 CYS C 50 CYS C 116 1555 1555 2.04 SSBOND 5 CYS D 40 CYS D 114 1555 1555 2.03 SSBOND 6 CYS D 155 CYS D 209 1555 1555 2.04 LINK ND2 ASN A 53 C1 NAG A 201 1555 1555 1.44 LINK ND2 ASN A 89 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 35 C1 NAG F 1 1555 1555 1.44 LINK C ILE B 126 N TPO B 127 1555 1555 1.32 LINK C TPO B 127 N VAL B 128 1555 1555 1.33 LINK ND2 ASN B 192 C1 NAG B 301 1555 1555 1.44 LINK ND2 ASN B 200 C1 NAG B 302 1555 1555 1.43 LINK ND2 ASN C 53 C1 NAG C 201 1555 1555 1.44 LINK ND2 ASN C 89 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN D 35 C1 NAG H 1 1555 1555 1.43 LINK ND2 ASN D 192 C1 NAG D 301 1555 1555 1.43 LINK ND2 ASN D 200 C1 NAG D 302 1555 1555 1.43 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.41 LINK O6 NAG E 1 C1 FUC E 3 1555 1555 1.41 LINK O3 NAG F 1 C1 NAG F 2 1555 1555 1.43 LINK O6 NAG F 1 C1 FUC F 3 1555 1555 1.40 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.43 LINK O6 NAG G 1 C1 FUC G 3 1555 1555 1.41 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.43 LINK O6 NAG H 1 C1 FUC H 3 1555 1555 1.39 CISPEP 1 TYR B 160 PRO B 161 0 -0.31 CISPEP 2 ASP B 215 PRO B 216 0 3.22 CISPEP 3 TYR D 160 PRO D 161 0 -2.09 CISPEP 4 ASP D 215 PRO D 216 0 1.19 CRYST1 59.928 122.152 152.675 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016687 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006550 0.00000