HEADER TRANSCRIPTION 31-JAN-22 7TRV TITLE CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF THE LYSR FAMILY TITLE 2 TRANSCRIPTIONAL REGULATOR YFBA FROM YERSINIA PESTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSR-FAMILY TRANSCRIPTIONAL REGULATORY PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PUTATIVE REGULATOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS CO92; SOURCE 3 ORGANISM_TAXID: 214092; SOURCE 4 GENE: LYSR10, Y2171, YP_1951; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS LYSR TRANSCRIPTIONAL REGULATOR, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,C.TESAR,M.CRAWFORD,G.CHHOR,M.ENDRES,G.BABNIGG,O.SCHNEEWIND, AUTHOR 2 A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 2 23-OCT-24 7TRV 1 REMARK REVDAT 1 09-FEB-22 7TRV 0 JRNL AUTH Y.KIM,C.TESAR,M.CRAWFORD,G.CHHOR,M.ENDRES,G.BABNIGG, JRNL AUTH 2 O.SCHNEEWIND,A.JOACHIMIAK, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF THE LYSR JRNL TITL 2 FAMILY TRANSCRIPTIONAL REGULATOR YFBA FROM YERSINIA PESTIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.940 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 27192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.310 REMARK 3 FREE R VALUE TEST SET COUNT : 1428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8400 - 3.8800 0.93 2597 167 0.1512 0.2180 REMARK 3 2 3.8800 - 3.0800 0.94 2595 145 0.1616 0.2002 REMARK 3 3 3.0800 - 2.6900 0.94 2612 161 0.1987 0.2449 REMARK 3 4 2.6900 - 2.4400 0.93 2592 151 0.2116 0.2830 REMARK 3 5 2.4400 - 2.2700 0.95 2611 124 0.2107 0.2591 REMARK 3 6 2.2700 - 2.1300 0.95 2626 129 0.2324 0.2522 REMARK 3 7 2.1300 - 2.0300 0.94 2579 151 0.2475 0.2791 REMARK 3 8 2.0300 - 1.9400 0.94 2562 136 0.2492 0.2695 REMARK 3 9 1.9400 - 1.8600 0.94 2609 142 0.2712 0.3277 REMARK 3 10 1.8600 - 1.8000 0.87 2382 121 0.3075 0.3388 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.602 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2961 REMARK 3 ANGLE : 0.383 3982 REMARK 3 CHIRALITY : 0.032 435 REMARK 3 PLANARITY : 0.003 512 REMARK 3 DIHEDRAL : 12.265 1114 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4628 12.9859 10.9660 REMARK 3 T TENSOR REMARK 3 T11: 0.1818 T22: 0.1512 REMARK 3 T33: 0.6946 T12: 0.0035 REMARK 3 T13: 0.0315 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.3026 L22: 1.2608 REMARK 3 L33: 2.1211 L12: 0.3140 REMARK 3 L13: 0.2384 L23: 0.0555 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: -0.0106 S13: 0.1853 REMARK 3 S21: -0.0883 S22: -0.0126 S23: -0.0384 REMARK 3 S31: -0.0844 S32: -0.0921 S33: 0.0279 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7832 3.7909 22.0453 REMARK 3 T TENSOR REMARK 3 T11: 0.2560 T22: 0.1634 REMARK 3 T33: 0.5648 T12: -0.0182 REMARK 3 T13: 0.0389 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 2.1766 L22: 5.0727 REMARK 3 L33: 2.0299 L12: -1.9485 REMARK 3 L13: 1.1457 L23: -2.4305 REMARK 3 S TENSOR REMARK 3 S11: -0.1190 S12: -0.0186 S13: 0.4302 REMARK 3 S21: 0.3744 S22: -0.1199 S23: -0.3646 REMARK 3 S31: -0.1011 S32: 0.0269 S33: 0.3095 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7331 -10.1893 11.7417 REMARK 3 T TENSOR REMARK 3 T11: 0.2126 T22: 0.1846 REMARK 3 T33: 0.5724 T12: 0.0195 REMARK 3 T13: 0.0076 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 0.7807 L22: 1.8077 REMARK 3 L33: 0.9894 L12: 0.5453 REMARK 3 L13: -0.1824 L23: 0.1647 REMARK 3 S TENSOR REMARK 3 S11: -0.0486 S12: 0.1578 S13: 0.1870 REMARK 3 S21: -0.0959 S22: -0.0753 S23: 0.0973 REMARK 3 S31: 0.0380 S32: -0.0329 S33: 0.1357 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1702 -9.2555 18.6805 REMARK 3 T TENSOR REMARK 3 T11: 0.1618 T22: 0.1574 REMARK 3 T33: 0.7436 T12: -0.0207 REMARK 3 T13: 0.0046 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 1.9937 L22: 0.5773 REMARK 3 L33: 0.8927 L12: -0.2236 REMARK 3 L13: 0.6135 L23: -0.3449 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: -0.0645 S13: -0.1032 REMARK 3 S21: -0.0009 S22: 0.0211 S23: -0.0448 REMARK 3 S31: 0.0853 S32: -0.0340 S33: -0.0113 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID -2 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8891 24.2826 -5.8016 REMARK 3 T TENSOR REMARK 3 T11: 0.2390 T22: 0.1250 REMARK 3 T33: 0.3159 T12: -0.0068 REMARK 3 T13: 0.0022 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 3.6450 L22: 0.4999 REMARK 3 L33: 3.5943 L12: 0.2434 REMARK 3 L13: -0.3694 L23: -0.4252 REMARK 3 S TENSOR REMARK 3 S11: 0.0840 S12: -0.0522 S13: -0.0033 REMARK 3 S21: -0.1092 S22: -0.0141 S23: -0.1862 REMARK 3 S31: 0.2288 S32: 0.1476 S33: -0.0488 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 60 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0270 33.8569 5.3457 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.2170 REMARK 3 T33: 0.5266 T12: -0.0317 REMARK 3 T13: 0.0011 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.3414 L22: 4.8185 REMARK 3 L33: 1.8120 L12: -2.4920 REMARK 3 L13: -1.1785 L23: 1.9219 REMARK 3 S TENSOR REMARK 3 S11: -0.1723 S12: -0.3636 S13: -0.5335 REMARK 3 S21: 0.4492 S22: -0.0482 S23: 0.3501 REMARK 3 S31: 0.2011 S32: 0.0352 S33: 0.2046 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID -1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5130 43.6017 -1.7355 REMARK 3 T TENSOR REMARK 3 T11: 0.1387 T22: 0.1897 REMARK 3 T33: 0.5120 T12: 0.0094 REMARK 3 T13: 0.0185 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 3.5849 L22: 4.3821 REMARK 3 L33: 2.0225 L12: 1.0988 REMARK 3 L13: 0.8564 L23: 1.4966 REMARK 3 S TENSOR REMARK 3 S11: 0.1123 S12: 0.0339 S13: -0.2509 REMARK 3 S21: -0.1105 S22: -0.2320 S23: -0.1081 REMARK 3 S31: 0.0563 S32: 0.0630 S33: 0.0795 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 17 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6209 52.6997 -11.0175 REMARK 3 T TENSOR REMARK 3 T11: 0.2784 T22: 0.2931 REMARK 3 T33: 0.5905 T12: -0.0402 REMARK 3 T13: 0.0560 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.6879 L22: 5.4968 REMARK 3 L33: 2.1312 L12: 1.7351 REMARK 3 L13: 0.9253 L23: 1.3518 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: 0.2713 S13: 0.0165 REMARK 3 S21: -0.3442 S22: 0.3052 S23: -0.2172 REMARK 3 S31: 0.0458 S32: 0.1191 S33: -0.1937 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 30 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4556 46.2849 -3.7741 REMARK 3 T TENSOR REMARK 3 T11: 0.2004 T22: 0.1673 REMARK 3 T33: 0.7632 T12: 0.0009 REMARK 3 T13: -0.0774 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 0.4898 L22: 3.4921 REMARK 3 L33: 1.4742 L12: -0.0108 REMARK 3 L13: -0.0120 L23: -1.9110 REMARK 3 S TENSOR REMARK 3 S11: -0.0513 S12: 0.0375 S13: 0.2596 REMARK 3 S21: -0.2108 S22: 0.0146 S23: 0.0784 REMARK 3 S31: 0.0958 S32: -0.0249 S33: 0.0061 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 45 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2689 58.0571 3.0016 REMARK 3 T TENSOR REMARK 3 T11: 0.3187 T22: 0.1979 REMARK 3 T33: 0.4241 T12: -0.0020 REMARK 3 T13: 0.0405 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 7.7390 L22: 0.9210 REMARK 3 L33: 4.3831 L12: 1.7618 REMARK 3 L13: -1.3685 L23: 1.1557 REMARK 3 S TENSOR REMARK 3 S11: 0.2013 S12: 0.2582 S13: 0.8527 REMARK 3 S21: -0.2813 S22: -0.1960 S23: -0.2243 REMARK 3 S31: -0.7753 S32: -0.1298 S33: -0.0725 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 60 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0912 42.4785 0.9647 REMARK 3 T TENSOR REMARK 3 T11: 0.2320 T22: 0.1635 REMARK 3 T33: 0.3549 T12: -0.0199 REMARK 3 T13: -0.0007 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 4.4639 L22: 1.2269 REMARK 3 L33: 1.2230 L12: -1.3046 REMARK 3 L13: -1.6311 L23: 0.7115 REMARK 3 S TENSOR REMARK 3 S11: 0.2531 S12: -0.1668 S13: 0.2708 REMARK 3 S21: -0.1011 S22: 0.0194 S23: -0.4642 REMARK 3 S31: -0.1565 S32: 0.1166 S33: -0.1523 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27328 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.14100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.95700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.025 M MAGNESIUM SULFATE, 0.05 M TRIS REMARK 280 HCL PH 8.5, 1.8 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 73.13500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 87 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ARG B 54 REMARK 465 ARG B 55 REMARK 465 ARG C 87 REMARK 465 SER D -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 3 110.42 -163.39 REMARK 500 HIS B 2 -157.35 -94.08 REMARK 500 ASP C 84 1.42 -65.08 REMARK 500 ASP D 3 107.42 -55.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP96020 RELATED DB: TARGETTRACK DBREF 7TRV A 1 87 UNP Q8D0G2 Q8D0G2_YERPE 10 96 DBREF 7TRV B 1 87 UNP Q8D0G2 Q8D0G2_YERPE 10 96 DBREF 7TRV C 1 87 UNP Q8D0G2 Q8D0G2_YERPE 10 96 DBREF 7TRV D 1 87 UNP Q8D0G2 Q8D0G2_YERPE 10 96 SEQADV 7TRV SER A -2 UNP Q8D0G2 EXPRESSION TAG SEQADV 7TRV ASN A -1 UNP Q8D0G2 EXPRESSION TAG SEQADV 7TRV ALA A 0 UNP Q8D0G2 EXPRESSION TAG SEQADV 7TRV SER B -2 UNP Q8D0G2 EXPRESSION TAG SEQADV 7TRV ASN B -1 UNP Q8D0G2 EXPRESSION TAG SEQADV 7TRV ALA B 0 UNP Q8D0G2 EXPRESSION TAG SEQADV 7TRV SER C -2 UNP Q8D0G2 EXPRESSION TAG SEQADV 7TRV ASN C -1 UNP Q8D0G2 EXPRESSION TAG SEQADV 7TRV ALA C 0 UNP Q8D0G2 EXPRESSION TAG SEQADV 7TRV SER D -2 UNP Q8D0G2 EXPRESSION TAG SEQADV 7TRV ASN D -1 UNP Q8D0G2 EXPRESSION TAG SEQADV 7TRV ALA D 0 UNP Q8D0G2 EXPRESSION TAG SEQRES 1 A 90 SER ASN ALA MSE HIS ASP LEU ASN ASP LEU TYR TYR TYR SEQRES 2 A 90 ALA GLU VAL VAL GLU HIS GLY GLY PHE SER ALA ALA ALA SEQRES 3 A 90 ARG VAL LEU GLY LEU PRO LYS SER LYS LEU SER ARG ARG SEQRES 4 A 90 LEU ALA LEU LEU GLU GLU ARG LEU GLY VAL ARG LEU ILE SEQRES 5 A 90 GLN ARG SER THR ARG ARG PHE ALA VAL THR ASP VAL GLY SEQRES 6 A 90 ARG THR TYR TYR GLU HIS CYS LYS ALA MSE ILE GLU GLU SEQRES 7 A 90 ALA ARG ALA ALA GLN GLU SER ILE ASP LEU THR ARG SEQRES 1 B 90 SER ASN ALA MSE HIS ASP LEU ASN ASP LEU TYR TYR TYR SEQRES 2 B 90 ALA GLU VAL VAL GLU HIS GLY GLY PHE SER ALA ALA ALA SEQRES 3 B 90 ARG VAL LEU GLY LEU PRO LYS SER LYS LEU SER ARG ARG SEQRES 4 B 90 LEU ALA LEU LEU GLU GLU ARG LEU GLY VAL ARG LEU ILE SEQRES 5 B 90 GLN ARG SER THR ARG ARG PHE ALA VAL THR ASP VAL GLY SEQRES 6 B 90 ARG THR TYR TYR GLU HIS CYS LYS ALA MSE ILE GLU GLU SEQRES 7 B 90 ALA ARG ALA ALA GLN GLU SER ILE ASP LEU THR ARG SEQRES 1 C 90 SER ASN ALA MSE HIS ASP LEU ASN ASP LEU TYR TYR TYR SEQRES 2 C 90 ALA GLU VAL VAL GLU HIS GLY GLY PHE SER ALA ALA ALA SEQRES 3 C 90 ARG VAL LEU GLY LEU PRO LYS SER LYS LEU SER ARG ARG SEQRES 4 C 90 LEU ALA LEU LEU GLU GLU ARG LEU GLY VAL ARG LEU ILE SEQRES 5 C 90 GLN ARG SER THR ARG ARG PHE ALA VAL THR ASP VAL GLY SEQRES 6 C 90 ARG THR TYR TYR GLU HIS CYS LYS ALA MSE ILE GLU GLU SEQRES 7 C 90 ALA ARG ALA ALA GLN GLU SER ILE ASP LEU THR ARG SEQRES 1 D 90 SER ASN ALA MSE HIS ASP LEU ASN ASP LEU TYR TYR TYR SEQRES 2 D 90 ALA GLU VAL VAL GLU HIS GLY GLY PHE SER ALA ALA ALA SEQRES 3 D 90 ARG VAL LEU GLY LEU PRO LYS SER LYS LEU SER ARG ARG SEQRES 4 D 90 LEU ALA LEU LEU GLU GLU ARG LEU GLY VAL ARG LEU ILE SEQRES 5 D 90 GLN ARG SER THR ARG ARG PHE ALA VAL THR ASP VAL GLY SEQRES 6 D 90 ARG THR TYR TYR GLU HIS CYS LYS ALA MSE ILE GLU GLU SEQRES 7 D 90 ALA ARG ALA ALA GLN GLU SER ILE ASP LEU THR ARG MODRES 7TRV MSE A 1 MET MODIFIED RESIDUE MODRES 7TRV MSE A 72 MET MODIFIED RESIDUE MODRES 7TRV MSE B 1 MET MODIFIED RESIDUE MODRES 7TRV MSE B 72 MET MODIFIED RESIDUE MODRES 7TRV MSE C 1 MET MODIFIED RESIDUE MODRES 7TRV MSE C 72 MET MODIFIED RESIDUE MODRES 7TRV MSE D 1 MET MODIFIED RESIDUE MODRES 7TRV MSE D 72 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 72 8 HET MSE B 1 8 HET MSE B 72 16 HET MSE C 1 8 HET MSE C 72 8 HET MSE D 1 8 HET MSE D 72 8 HET SO4 A 101 5 HET CL A 102 1 HET CL A 103 1 HET SO4 A 104 5 HET SO4 A 105 5 HET GOL B 101 6 HET CL B 102 1 HET CL B 103 1 HET FMT B 104 3 HET SO4 B 105 5 HET CL C 101 1 HET GOL C 102 6 HET SO4 C 103 5 HET GOL D 101 6 HET CL D 102 1 HET CL D 103 1 HET CL D 104 1 HET FMT D 105 3 HET FMT D 106 3 HET SO4 D 107 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 SO4 6(O4 S 2-) FORMUL 6 CL 8(CL 1-) FORMUL 10 GOL 3(C3 H8 O3) FORMUL 13 FMT 3(C H2 O2) FORMUL 25 HOH *197(H2 O) HELIX 1 AA1 ASP A 3 HIS A 16 1 14 HELIX 2 AA2 GLY A 18 GLY A 27 1 10 HELIX 3 AA3 PRO A 29 GLY A 45 1 17 HELIX 4 AA4 THR A 59 LEU A 85 1 27 HELIX 5 AA5 LEU B 4 GLY B 17 1 14 HELIX 6 AA6 GLY B 18 GLY B 27 1 10 HELIX 7 AA7 PRO B 29 GLY B 45 1 17 HELIX 8 AA8 THR B 59 ARG B 87 1 29 HELIX 9 AA9 ASP C 3 HIS C 16 1 14 HELIX 10 AB1 GLY C 18 GLY C 27 1 10 HELIX 11 AB2 PRO C 29 GLY C 45 1 17 HELIX 12 AB3 THR C 59 ASP C 84 1 26 HELIX 13 AB4 LEU D 4 GLY D 17 1 14 HELIX 14 AB5 GLY D 18 GLY D 27 1 10 HELIX 15 AB6 PRO D 29 GLY D 45 1 17 HELIX 16 AB7 THR D 59 ARG D 87 1 29 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N HIS A 2 1555 1555 1.34 LINK C ALA A 71 N MSE A 72 1555 1555 1.33 LINK C MSE A 72 N ILE A 73 1555 1555 1.34 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N HIS B 2 1555 1555 1.33 LINK C ALA B 71 N AMSE B 72 1555 1555 1.33 LINK C ALA B 71 N BMSE B 72 1555 1555 1.33 LINK C AMSE B 72 N ILE B 73 1555 1555 1.34 LINK C BMSE B 72 N ILE B 73 1555 1555 1.33 LINK C ALA C 0 N MSE C 1 1555 1555 1.33 LINK C MSE C 1 N HIS C 2 1555 1555 1.33 LINK C ALA C 71 N MSE C 72 1555 1555 1.33 LINK C MSE C 72 N ILE C 73 1555 1555 1.33 LINK C ALA D 0 N MSE D 1 1555 1555 1.33 LINK C MSE D 1 N HIS D 2 1555 1555 1.33 LINK C ALA D 71 N MSE D 72 1555 1555 1.33 LINK C MSE D 72 N ILE D 73 1555 1555 1.34 CRYST1 30.943 146.270 33.701 90.00 90.21 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032317 0.000000 0.000116 0.00000 SCALE2 0.000000 0.006837 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029673 0.00000