HEADER OXIDOREDUCTASE 31-JAN-22 7TSJ TITLE XENON-BOUND STRUCTURE OF CARBON MONOXIDE DEHYDROGENASE (CODH) FROM TITLE 2 DESULFOVIBRIO VULGARIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON MONOXIDE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.2.7.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; SOURCE 3 ORGANISM_TAXID: 881; SOURCE 4 GENE: COOS, DVU_2098; SOURCE 5 EXPRESSION_SYSTEM: SOLIDESULFOVIBRIO FRUCTOSIVORANS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: DESULFOVIBRIO FRUCTOSOVORANS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 878 KEYWDS CO-DEHYDROGENASE, DESULFOVIBRIO VULGARIS, XENON, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BIESTER,C.L.DRENNAN REVDAT 2 18-OCT-23 7TSJ 1 REMARK REVDAT 1 04-MAY-22 7TSJ 0 JRNL AUTH A.BIESTER,S.DEMENTIN,C.L.DRENNAN JRNL TITL VISUALIZING THE GAS CHANNEL OF A MONOFUNCTIONAL CARBON JRNL TITL 2 MONOXIDE DEHYDROGENASE. JRNL REF J.INORG.BIOCHEM. V. 230 11774 2022 JRNL REFN ISSN 0162-0134 JRNL PMID 35278753 JRNL DOI 10.1016/J.JINORGBIO.2022.111774 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 34847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7200 - 4.9300 0.95 2528 136 0.1442 0.1541 REMARK 3 2 4.9300 - 3.9100 0.98 2541 144 0.1391 0.1880 REMARK 3 3 3.9100 - 3.4200 0.98 2530 142 0.1589 0.1978 REMARK 3 4 3.4200 - 3.1100 0.98 2547 142 0.1807 0.2201 REMARK 3 5 3.1100 - 2.8800 0.97 2524 137 0.2007 0.2275 REMARK 3 6 2.8800 - 2.7100 0.98 2500 127 0.1899 0.2602 REMARK 3 7 2.7100 - 2.5800 0.99 2588 148 0.1839 0.2319 REMARK 3 8 2.5800 - 2.4700 0.99 2548 135 0.1860 0.2413 REMARK 3 9 2.4700 - 2.3700 0.99 2559 140 0.1854 0.2421 REMARK 3 10 2.3700 - 2.2900 0.99 2560 145 0.1906 0.2371 REMARK 3 11 2.2900 - 2.2200 0.99 2572 136 0.1971 0.2524 REMARK 3 12 2.2200 - 2.1500 0.99 2525 158 0.2068 0.2562 REMARK 3 13 2.1500 - 2.1000 0.96 2507 128 0.2320 0.2942 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 19.2320 -5.7906 1.5046 REMARK 3 T TENSOR REMARK 3 T11: 0.3096 T22: 0.3464 REMARK 3 T33: 0.3812 T12: 0.0199 REMARK 3 T13: 0.0203 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 2.0368 L22: 1.0751 REMARK 3 L33: 0.8442 L12: -0.2473 REMARK 3 L13: -0.2138 L23: -0.0783 REMARK 3 S TENSOR REMARK 3 S11: 0.0659 S12: -0.2058 S13: -0.1212 REMARK 3 S21: 0.1203 S22: -0.1225 S23: -0.1952 REMARK 3 S31: 0.1328 S32: 0.2087 S33: 0.0528 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TSJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000260458. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34865 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.867 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.67 REMARK 200 R MERGE FOR SHELL (I) : 0.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6B6V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250 MM MGCL2, 16% (W/V) PEG 3350, PH REMARK 280 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.94600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.94600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 50.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 TRP A -6 REMARK 465 SER A -5 REMARK 465 HIS A -4 REMARK 465 PRO A -3 REMARK 465 ALA A -2 REMARK 465 VAL A -1 REMARK 465 ARG A 0 REMARK 465 LYS A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 THR A 6 REMARK 465 ILE A 7 REMARK 465 SER A 629 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 847 O HOH A 865 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 109 O HOH A 864 2555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 49 44.41 -91.03 REMARK 500 CYS A 205 -104.22 -117.74 REMARK 500 ASN A 250 173.87 109.83 REMARK 500 CYS A 301 -138.56 55.51 REMARK 500 ASN A 318 -156.96 -103.54 REMARK 500 ASP A 337 -85.20 -118.01 REMARK 500 GLN A 339 125.94 84.52 REMARK 500 TYR A 352 -167.96 -126.39 REMARK 500 CYS A 448 -155.56 -93.71 REMARK 500 HIS A 591 -54.51 -138.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 702 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 42 SG REMARK 620 2 FES A 702 S2 101.6 REMARK 620 3 CYS A 45 SG 112.2 121.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 701 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 51 SG REMARK 620 2 SF4 A 701 S2 120.1 REMARK 620 3 SF4 A 701 S3 109.1 106.3 REMARK 620 4 SF4 A 701 S4 108.8 105.6 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 701 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 54 SG REMARK 620 2 SF4 A 701 S1 101.1 REMARK 620 3 SF4 A 701 S2 114.9 104.3 REMARK 620 4 SF4 A 701 S3 124.8 103.6 105.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 701 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 59 SG REMARK 620 2 SF4 A 701 S1 115.1 REMARK 620 3 SF4 A 701 S3 114.5 103.9 REMARK 620 4 SF4 A 701 S4 113.5 104.6 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 701 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 74 SG REMARK 620 2 SF4 A 701 S1 114.1 REMARK 620 3 SF4 A 701 S2 116.6 104.4 REMARK 620 4 SF4 A 701 S4 113.1 103.8 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CUV A 703 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 266 NE2 REMARK 620 2 CUV A 703 FE2 100.9 REMARK 620 3 CYS A 519 SG 105.9 136.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CUV A 703 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 301 SG REMARK 620 2 CUV A 703 S3 101.9 REMARK 620 3 CUV A 703 NI 117.6 138.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CUV A 703 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 340 SG REMARK 620 2 CUV A 703 S2 98.8 REMARK 620 3 CUV A 703 S4 109.2 109.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CUV A 703 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 448 SG REMARK 620 2 CUV A 703 S1 120.0 REMARK 620 3 CUV A 703 S2 113.0 109.3 REMARK 620 4 CUV A 703 S4 103.8 100.0 109.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CUV A 703 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 478 SG REMARK 620 2 CUV A 703 S1 115.0 REMARK 620 3 CUV A 703 S2 94.6 116.8 REMARK 620 4 CUV A 703 S3 96.6 105.5 126.0 REMARK 620 N 1 2 3 DBREF 7TSJ A 2 629 UNP Q72A99 Q72A99_DESVH 2 629 SEQADV 7TSJ MET A -7 UNP Q72A99 EXPRESSION TAG SEQADV 7TSJ TRP A -6 UNP Q72A99 EXPRESSION TAG SEQADV 7TSJ SER A -5 UNP Q72A99 EXPRESSION TAG SEQADV 7TSJ HIS A -4 UNP Q72A99 EXPRESSION TAG SEQADV 7TSJ PRO A -3 UNP Q72A99 EXPRESSION TAG SEQADV 7TSJ ALA A -2 UNP Q72A99 EXPRESSION TAG SEQADV 7TSJ VAL A -1 UNP Q72A99 EXPRESSION TAG SEQADV 7TSJ ARG A 0 UNP Q72A99 EXPRESSION TAG SEQADV 7TSJ LYS A 1 UNP Q72A99 EXPRESSION TAG SEQRES 1 A 637 MET TRP SER HIS PRO ALA VAL ARG LYS SER SER SER LYS SEQRES 2 A 637 THR ILE ARG SER ARG SER ILE TRP ASP ASP ALA HIS ALA SEQRES 3 A 637 MET LEU GLU LYS ALA LYS ALA GLU GLY ILE SER THR VAL SEQRES 4 A 637 TRP ASP ARG ALA ALA GLU GLN THR PRO ALA CYS LYS PHE SEQRES 5 A 637 CYS GLU LEU GLY THR THR CYS ARG ASN CYS ILE MET GLY SEQRES 6 A 637 PRO CYS ARG ILE ALA ASN ARG LYS ASP GLY LYS MET ARG SEQRES 7 A 637 LEU GLY VAL CYS GLY ALA ASP ALA ASP VAL ILE VAL ALA SEQRES 8 A 637 ARG ASN PHE GLY ARG PHE ILE ALA GLY GLY ALA ALA GLY SEQRES 9 A 637 HIS SER ASP HIS GLY ARG ASP LEU ILE GLU THR LEU GLU SEQRES 10 A 637 ALA VAL ALA GLU GLY LYS ALA PRO GLY TYR THR ILE ARG SEQRES 11 A 637 ASP VAL ALA LYS LEU ARG ARG ILE ALA ALA GLU LEU GLY SEQRES 12 A 637 VAL ALA ASP ALA ALA THR ARG PRO ALA HIS ASP VAL ALA SEQRES 13 A 637 ALA ASP LEU VAL THR ILE CYS TYR ASN ASP PHE GLY SER SEQRES 14 A 637 ARG ARG ASN ALA LEU ALA PHE LEU ALA ARG ALA PRO GLN SEQRES 15 A 637 VAL ARG ARG ASP LEU TRP GLN ARG LEU GLY MET THR PRO SEQRES 16 A 637 ARG GLY VAL ASP ARG GLU ILE ALA GLU MET MET HIS ARG SEQRES 17 A 637 THR HIS MET GLY CYS ASP ASN ASP HIS THR SER LEU LEU SEQRES 18 A 637 VAL HIS ALA ALA ARG THR ALA LEU ALA ASP GLY TRP GLY SEQRES 19 A 637 GLY SER MET ILE GLY THR GLU LEU SER ASP ILE LEU PHE SEQRES 20 A 637 GLY THR PRO ARG PRO ARG GLN SER THR VAL ASN LEU GLY SEQRES 21 A 637 VAL LEU ARG LYS ASP ALA VAL ASN ILE LEU VAL HIS GLY SEQRES 22 A 637 HIS ASN PRO VAL VAL SER GLU MET ILE LEU ALA ALA THR SEQRES 23 A 637 ARG GLU PRO ALA VAL ARG GLN ALA ALA GLN ASP ALA GLY SEQRES 24 A 637 ALA ALA ASP ILE ASN VAL ALA GLY LEU CYS CYS THR GLY SEQRES 25 A 637 ASN GLU LEU LEU MET ARG GLN GLY ILE PRO MET ALA GLY SEQRES 26 A 637 ASN HIS LEU MET THR GLU LEU ALA ILE VAL THR GLY ALA SEQRES 27 A 637 ALA ASP ALA ILE VAL ALA ASP TYR GLN CYS ILE MET PRO SEQRES 28 A 637 SER LEU VAL GLN ILE ALA ALA CYS TYR HIS THR ARG PHE SEQRES 29 A 637 VAL THR THR SER PRO LYS GLY ARG PHE THR GLY ALA THR SEQRES 30 A 637 HIS VAL GLU VAL HIS PRO HIS ASN ALA GLN GLU ARG CYS SEQRES 31 A 637 ARG GLU ILE VAL MET LEU ALA ILE ASP ALA TYR THR ARG SEQRES 32 A 637 ARG ASP PRO ALA ARG VAL ASP ILE PRO SER GLN PRO VAL SEQRES 33 A 637 SER ILE MET SER GLY PHE SER ASN GLU ALA ILE LEU GLU SEQRES 34 A 637 ALA LEU GLY GLY THR PRO LYS PRO LEU ILE ASP ALA VAL SEQRES 35 A 637 VAL ALA GLY GLN ILE ARG GLY PHE VAL GLY ILE VAL GLY SEQRES 36 A 637 CYS ASN ASN PRO LYS ILE ARG GLN ASP SER ALA ASN VAL SEQRES 37 A 637 THR LEU THR ARG GLU LEU ILE ARG ARG ASP ILE MET VAL SEQRES 38 A 637 LEU ALA THR GLY CYS VAL THR THR ALA ALA GLY LYS ALA SEQRES 39 A 637 GLY LEU LEU VAL PRO GLU ALA ALA SER LYS ALA GLY GLU SEQRES 40 A 637 GLY LEU ALA ALA VAL CYS ARG SER LEU GLY VAL PRO PRO SEQRES 41 A 637 VAL LEU HIS MET GLY SER CYS VAL ASP ASN SER ARG ILE SEQRES 42 A 637 LEU GLN LEU CYS ALA LEU LEU ALA THR THR LEU GLY VAL SEQRES 43 A 637 ASP ILE SER ASP LEU PRO VAL GLY ALA SER SER PRO GLU SEQRES 44 A 637 TRP TYR SER GLU LYS ALA ALA ALA ILE ALA MET TYR ALA SEQRES 45 A 637 VAL ALA SER GLY ILE PRO THR HIS LEU GLY LEU PRO PRO SEQRES 46 A 637 ASN ILE LEU GLY SER GLU ASN VAL THR ALA MET ALA LEU SEQRES 47 A 637 HIS GLY LEU GLN ASP VAL VAL GLY ALA ALA PHE MET VAL SEQRES 48 A 637 GLU PRO ASP PRO VAL LYS ALA ALA ASP MET LEU GLU ALA SEQRES 49 A 637 HIS ILE VAL ALA ARG ARG ALA ARG LEU GLY LEU THR SER HET SF4 A 701 8 HET FES A 702 2 HET CUV A 703 9 HET XE A 704 1 HET XE A 705 1 HET XE A 706 1 HET XE A 707 1 HET XE A 708 1 HET XE A 709 1 HET XE A 710 1 HET XE A 711 1 HET XE A 712 1 HET XE A 713 1 HET XE A 714 1 HET XE A 715 1 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM CUV FE(4)-NI(1)-S(4) CLUSTER, OXIDIZED HETNAM XE XENON HETSYN CUV C CLUSTER, OXIDIZED FORMUL 2 SF4 FE4 S4 FORMUL 3 FES FE2 S2 FORMUL 4 CUV FE4 NI S4 FORMUL 5 XE 12(XE) FORMUL 17 HOH *74(H2 O) HELIX 1 AA1 TRP A 13 GLU A 26 1 14 HELIX 2 AA2 THR A 30 GLN A 38 1 9 HELIX 3 AA3 CYS A 42 GLY A 48 1 7 HELIX 4 AA4 ASP A 77 GLU A 113 1 37 HELIX 5 AA5 ASP A 123 LEU A 134 1 12 HELIX 6 AA6 PRO A 143 PHE A 159 1 17 HELIX 7 AA7 LEU A 166 ALA A 172 5 7 HELIX 8 AA8 PRO A 173 GLY A 184 1 12 HELIX 9 AA9 GLY A 189 HIS A 202 1 14 HELIX 10 AB1 ASP A 208 TRP A 225 1 18 HELIX 11 AB2 GLY A 226 GLY A 240 1 15 HELIX 12 AB3 ASN A 250 LEU A 254 5 5 HELIX 13 AB4 ASN A 267 THR A 278 1 12 HELIX 14 AB5 GLU A 280 ALA A 290 1 11 HELIX 15 AB6 CYS A 301 GLY A 312 1 12 HELIX 16 AB7 ASN A 318 LEU A 320 5 3 HELIX 17 AB8 MET A 321 THR A 328 1 8 HELIX 18 AB9 PRO A 343 CYS A 351 1 9 HELIX 19 AC1 ASN A 377 ARG A 395 1 19 HELIX 20 AC2 ARG A 396 VAL A 401 5 6 HELIX 21 AC3 SER A 415 LEU A 423 1 9 HELIX 22 AC4 PRO A 427 ALA A 436 1 10 HELIX 23 AC5 ASP A 456 ARG A 469 1 14 HELIX 24 AC6 GLY A 477 ALA A 486 1 10 HELIX 25 AC7 VAL A 490 ALA A 497 5 8 HELIX 26 AC8 GLY A 498 GLY A 509 1 12 HELIX 27 AC9 ASP A 521 GLY A 537 1 17 HELIX 28 AD1 ASP A 539 LEU A 543 5 5 HELIX 29 AD2 SER A 554 SER A 567 1 14 HELIX 30 AD3 SER A 582 HIS A 591 1 10 HELIX 31 AD4 LEU A 593 GLY A 598 1 6 HELIX 32 AD5 ASP A 606 LEU A 625 1 20 SHEET 1 AA1 2 THR A 50 CYS A 51 0 SHEET 2 AA1 2 CYS A 59 ARG A 60 -1 O CYS A 59 N CYS A 51 SHEET 1 AA2 2 ARG A 245 VAL A 249 0 SHEET 2 AA2 2 VAL A 408 SER A 412 -1 O SER A 412 N ARG A 245 SHEET 1 AA3 6 MET A 315 GLY A 317 0 SHEET 2 AA3 6 ASP A 294 LEU A 300 1 N GLY A 299 O ALA A 316 SHEET 3 AA3 6 ALA A 258 HIS A 264 1 N VAL A 259 O ASN A 296 SHEET 4 AA3 6 ALA A 333 ALA A 336 1 O VAL A 335 N LEU A 262 SHEET 5 AA3 6 ARG A 355 THR A 358 1 O VAL A 357 N ILE A 334 SHEET 6 AA3 6 THR A 369 HIS A 370 1 O THR A 369 N PHE A 356 SHEET 1 AA4 6 VAL A 513 GLY A 517 0 SHEET 2 AA4 6 ILE A 471 THR A 476 1 N ALA A 475 O MET A 516 SHEET 3 AA4 6 GLY A 441 ILE A 445 1 N VAL A 443 O LEU A 474 SHEET 4 AA4 6 VAL A 545 SER A 549 1 O GLY A 546 N GLY A 444 SHEET 5 AA4 6 THR A 571 LEU A 573 1 O HIS A 572 N ALA A 547 SHEET 6 AA4 6 PHE A 601 VAL A 603 1 O MET A 602 N LEU A 573 LINK SG CYS A 42 FE1 FES A 702 1555 1555 2.50 LINK SG CYS A 45 FE1 FES A 702 1555 1555 2.47 LINK SG CYS A 51 FE1 SF4 A 701 1555 1555 2.44 LINK SG CYS A 54 FE4 SF4 A 701 1555 1555 2.48 LINK SG CYS A 59 FE2 SF4 A 701 1555 1555 2.39 LINK SG CYS A 74 FE3 SF4 A 701 1555 1555 2.57 LINK NE2 HIS A 266 NI CUV A 703 1555 1555 1.98 LINK SG CYS A 301 FE2 CUV A 703 1555 1555 2.40 LINK SG CYS A 340 FE1 CUV A 703 1555 1555 2.41 LINK SG CYS A 448 FE3 CUV A 703 1555 1555 2.30 LINK SG CYS A 478 FE4 CUV A 703 1555 1555 2.33 LINK SG CYS A 519 NI CUV A 703 1555 1555 2.59 CISPEP 1 THR A 39 PRO A 40 0 2.29 CISPEP 2 GLY A 57 PRO A 58 0 8.77 CRYST1 113.892 100.870 65.384 90.00 124.88 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008780 0.000000 0.006121 0.00000 SCALE2 0.000000 0.009914 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018644 0.00000