HEADER VIRAL PROTEIN/IMMUNE SYSTEM 02-FEB-22 7TTY TITLE CRYSTAL STRUCTURE OF POTENT NEUTRALIZING ANTIBODY 10-40 IN COMPLEX TITLE 2 WITH BAT WIV1 RECEPTOR-BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RECEPTOR-BINDING DOMAIN (UNP RESIDUES 322-515); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 1040 HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 1040 LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BAT SARS-LIKE CORONAVIRUS WIV1; SOURCE 3 ORGANISM_TAXID: 1415852; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS COVID-19, SARBECOVIRUS, WIV1 RBD, VIRAL PROTEIN, SPIKE GLYCOPROTEIN, KEYWDS 2 RECEPTOR BINDING PROTEIN, NEUTRALIZING ANTIBODY, POTENT, 10-40, FAB, KEYWDS 3 VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.R.REDDEM,L.SHAPIRO REVDAT 3 18-OCT-23 7TTY 1 REMARK REVDAT 2 08-JUN-22 7TTY 1 JRNL REVDAT 1 04-MAY-22 7TTY 0 JRNL AUTH L.LIU,S.IKETANI,Y.GUO,E.R.REDDEM,R.G.CASNER,M.S.NAIR,J.YU, JRNL AUTH 2 J.F.CHAN,M.WANG,G.CERUTTI,Z.LI,N.C.MORANO,C.D.CASTAGNA, JRNL AUTH 3 L.CORREDOR,H.CHU,S.YUAN,V.K.POON,C.C.CHAN,Z.CHEN,Y.LUO, JRNL AUTH 4 M.CUNNINGHAM,A.CHAVEZ,M.T.YIN,D.S.PERLIN,M.TSUJI,K.Y.YUEN, JRNL AUTH 5 P.D.KWONG,Z.SHENG,Y.HUANG,L.SHAPIRO,D.D.HO JRNL TITL AN ANTIBODY CLASS WITH A COMMON CDRH3 MOTIF BROADLY JRNL TITL 2 NEUTRALIZES SARBECOVIRUSES. JRNL REF SCI TRANSL MED V. 14 N6859 2022 JRNL REFN ESSN 1946-6242 JRNL PMID 35438546 JRNL DOI 10.1126/SCITRANSLMED.ABN6859 REMARK 2 REMARK 2 RESOLUTION. 3.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 11493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.329 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 6.2200 0.99 1357 147 0.2416 0.3288 REMARK 3 2 6.2100 - 4.9300 1.00 1329 149 0.2123 0.3180 REMARK 3 3 4.9300 - 4.3100 1.00 1318 146 0.1882 0.2895 REMARK 3 4 4.3100 - 3.9200 0.98 1306 144 0.2226 0.3233 REMARK 3 5 3.9200 - 3.6400 1.00 1313 145 0.2610 0.3509 REMARK 3 6 3.6300 - 3.4200 1.00 1324 146 0.2872 0.3966 REMARK 3 7 3.4200 - 3.2500 0.99 1316 146 0.3161 0.3679 REMARK 3 8 3.2500 - 3.1100 0.83 1082 125 0.3165 0.3880 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.598 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.855 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5030 REMARK 3 ANGLE : 1.917 6867 REMARK 3 CHIRALITY : 0.104 765 REMARK 3 PLANARITY : 0.013 877 REMARK 3 DIHEDRAL : 12.772 703 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 334:528 ) OR ( CHAIN H AND RESID REMARK 3 1:216 ) OR ( CHAIN L AND RESID 1:210 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.269 -3.966 24.866 REMARK 3 T TENSOR REMARK 3 T11: 0.7367 T22: 0.6442 REMARK 3 T33: 0.6953 T12: -0.0394 REMARK 3 T13: -0.0071 T23: 0.0751 REMARK 3 L TENSOR REMARK 3 L11: 0.1778 L22: 0.1719 REMARK 3 L33: 0.3892 L12: -0.1447 REMARK 3 L13: -0.2693 L23: 0.2166 REMARK 3 S TENSOR REMARK 3 S11: -0.0860 S12: 0.0058 S13: -0.0814 REMARK 3 S21: 0.0417 S22: 0.1103 S23: 0.1156 REMARK 3 S31: -0.1635 S32: 0.0224 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TTY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000262911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11493 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.110 REMARK 200 RESOLUTION RANGE LOW (A) : 91.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.19000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 7SD5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, PH 5.5, 20% REMARK 280 PROPANOL, 20% PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.77300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 516 REMARK 465 LEU A 517 REMARK 465 ASN A 518 REMARK 465 ALA A 519 REMARK 465 PRO A 520 REMARK 465 UNK H 129 REMARK 465 UNK H 130 REMARK 465 UNK H 131 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 391 CB CYS A 391 SG -0.161 REMARK 500 ASN L 69 CG ASN L 69 OD1 -0.134 REMARK 500 TYR L 192 CD1 TYR L 192 CE1 -0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 338 CB - CG - CD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 PHE A 347 CB - CG - CD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 PHE A 347 CB - CG - CD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 357 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 408 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 LEU A 434 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG A 454 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 457 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 462 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 PHE A 464 CB - CG - CD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 466 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 PHE A 485 CB - CG - CD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG H 66 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 CYS H 92 CA - CB - SG ANGL. DEV. = 9.1 DEGREES REMARK 500 LYS L 16 CB - CG - CD ANGL. DEV. = 19.9 DEGREES REMARK 500 TYR L 32 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG L 54 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 LEU L 78 CA - CB - CG ANGL. DEV. = 17.8 DEGREES REMARK 500 LEU L 78 CB - CG - CD1 ANGL. DEV. = 21.8 DEGREES REMARK 500 LEU L 107 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 LEU L 181 CA - CB - CG ANGL. DEV. = 18.4 DEGREES REMARK 500 ARG L 190 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 TYR L 192 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 370 61.14 -111.15 REMARK 500 ASP A 389 40.28 -99.56 REMARK 500 ILE A 410 72.83 -101.41 REMARK 500 THR A 415 -169.63 -114.16 REMARK 500 ASN A 422 -68.03 -134.81 REMARK 500 ASP A 428 56.35 -93.90 REMARK 500 ASP A 476 -32.96 71.83 REMARK 500 CYS A 480 -71.35 -81.47 REMARK 500 PRO A 483 78.79 -62.72 REMARK 500 GLU H 16 -153.12 -109.84 REMARK 500 ASP H 100A -146.05 -93.49 REMARK 500 ASN H 100I 76.19 44.24 REMARK 500 TYR H 100J -36.51 -138.23 REMARK 500 ASP H 101 -84.05 -127.48 REMARK 500 SER H 127 -125.36 -146.73 REMARK 500 VAL H 142 78.11 -109.61 REMARK 500 ASP H 144 88.76 58.64 REMARK 500 SER H 203 15.18 -140.83 REMARK 500 ASP H 208 64.10 -106.09 REMARK 500 PRO H 213 -171.74 -66.31 REMARK 500 ASP L 51 -40.76 69.82 REMARK 500 ASN L 52 -7.40 -149.67 REMARK 500 ASP L 92 -155.80 -141.47 REMARK 500 SER L 93 32.21 -84.54 REMARK 500 SER L 94 -51.98 -135.01 REMARK 500 SER L 95 -166.47 -162.74 REMARK 500 TYR L 141 137.28 -170.29 REMARK 500 ASP L 152 -107.42 47.49 REMARK 500 LYS L 172 -153.74 -87.10 REMARK 500 VAL L 207 -167.68 -129.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 370 SER A 371 141.55 REMARK 500 VAL A 471 PRO A 472 -148.62 REMARK 500 PRO A 482 PRO A 483 -125.93 REMARK 500 TYR H 53 SER H 54 142.92 REMARK 500 PRO H 149 VAL H 150 143.45 REMARK 500 THR H 205 LYS H 206 143.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 347 0.07 SIDE CHAIN REMARK 500 ASN L 69 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7TTY A 334 527 UNP U5WI05 U5WI05_SARS 322 515 DBREF 7TTY H 1 216 PDB 7TTY 7TTY 1 216 DBREF 7TTY L 1 210 PDB 7TTY 7TTY 1 210 SEQADV 7TTY LYS A 528 UNP U5WI05 EXPRESSION TAG SEQRES 1 A 195 ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR THR SEQRES 2 A 195 PHE PRO SER VAL TYR ALA TRP GLU ARG LYS ARG ILE SER SEQRES 3 A 195 ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER THR SEQRES 4 A 195 SER PHE SER THR PHE LYS CYS TYR GLY VAL SER ALA THR SEQRES 5 A 195 LYS LEU ASN ASP LEU CYS PHE SER ASN VAL TYR ALA ASP SEQRES 6 A 195 SER PHE VAL VAL LYS GLY ASP ASP VAL ARG GLN ILE ALA SEQRES 7 A 195 PRO GLY GLN THR GLY VAL ILE ALA ASP TYR ASN TYR LYS SEQRES 8 A 195 LEU PRO ASP ASP PHE THR GLY CYS VAL LEU ALA TRP ASN SEQRES 9 A 195 THR ARG ASN ILE ASP ALA THR GLN THR GLY ASN TYR ASN SEQRES 10 A 195 TYR LYS TYR ARG SER LEU ARG HIS GLY LYS LEU ARG PRO SEQRES 11 A 195 PHE GLU ARG ASP ILE SER ASN VAL PRO PHE SER PRO ASP SEQRES 12 A 195 GLY LYS PRO CYS THR PRO PRO ALA PHE ASN CYS TYR TRP SEQRES 13 A 195 PRO LEU ASN ASP TYR GLY PHE TYR ILE THR ASN GLY ILE SEQRES 14 A 195 GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER PHE GLU SEQRES 15 A 195 LEU LEU ASN ALA PRO ALA THR VAL CYS GLY PRO LYS LYS SEQRES 1 H 233 GLN LEU GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 233 PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 233 GLY SER ILE SER SER SER ASN PHE TYR TRP GLY TRP ILE SEQRES 4 H 233 ARG GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE ALA SER SEQRES 5 H 233 ILE THR TYR SER GLY ARG THR PHE TYR ASN PRO SER LEU SEQRES 6 H 233 LYS SER ARG VAL ALA ILE SER VAL ASP THR SER LYS ASN SEQRES 7 H 233 GLN PHE SER LEU LYS LEU SER SER VAL THR ALA ALA ASP SEQRES 8 H 233 THR ALA VAL TYR TYR CYS ALA ARG THR PHE PRO SER TYR SEQRES 9 H 233 TYR ASP ARG SER GLY TYR HIS TYR LEU ASN TYR GLY MET SEQRES 10 H 233 ASP VAL TRP GLY GLN GLY THR THR VAL THR VAL SER SER SEQRES 11 H 233 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 12 H 233 SER SER UNK UNK UNK SER GLY GLY THR ALA ALA LEU GLY SEQRES 13 H 233 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 14 H 233 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 15 H 233 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 16 H 233 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 17 H 233 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 18 H 233 THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 L 213 ASN PHE MET LEU THR GLN PRO HIS SER MET SER GLU SER SEQRES 2 L 213 PRO GLY LYS THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 L 213 GLY SER ILE ALA SER ASN TYR VAL GLN TRP TYR GLN GLN SEQRES 4 L 213 ARG PRO GLY SER SER PRO THR THR VAL ILE TYR GLU ASP SEQRES 5 L 213 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 213 SER ILE ASP SER SER SER ASN SER ALA SER LEU THR ILE SEQRES 7 L 213 SER GLY LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 L 213 GLN SER TYR ASP SER SER SER TRP VAL PHE GLY GLY GLY SEQRES 9 L 213 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ASN PRO SEQRES 10 L 213 THR VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 213 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 213 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP GLY SEQRES 13 L 213 SER PRO VAL LYS ALA GLY VAL GLU THR THR LYS PRO SER SEQRES 14 L 213 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 213 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 213 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 213 THR VAL ALA PRO THR HET NAG B 1 26 HET NAG B 2 27 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 2(C8 H15 N O6) HELIX 1 AA1 PHE A 338 ASN A 343 1 6 HELIX 2 AA2 TYR A 365 ASN A 370 1 6 HELIX 3 AA3 SER A 383 LEU A 387 5 5 HELIX 4 AA4 ASP A 405 ILE A 410 5 6 HELIX 5 AA5 GLY A 416 TYR A 421 1 6 HELIX 6 AA6 THR A 438 ALA A 443 1 6 HELIX 7 AA7 GLY A 501 TYR A 504 5 4 HELIX 8 AA8 THR H 83 THR H 87 5 5 HELIX 9 AA9 PRO H 202 ASN H 204 5 3 HELIX 10 AB1 SER L 27B ASN L 31 5 5 HELIX 11 AB2 LYS L 79 GLU L 83 5 5 HELIX 12 AB3 SER L 122 GLN L 127 1 6 HELIX 13 AB4 THR L 182 SER L 188 1 7 SHEET 1 AA1 4 GLU A 354 ILE A 358 0 SHEET 2 AA1 4 CYS A 391 LYS A 403 -1 O VAL A 395 N ILE A 358 SHEET 3 AA1 4 THR A 522 CYS A 524 -1 O VAL A 523 N PHE A 392 SHEET 4 AA1 4 CYS A 361 VAL A 362 1 N CYS A 361 O THR A 522 SHEET 1 AA2 7 GLU A 354 ILE A 358 0 SHEET 2 AA2 7 CYS A 391 LYS A 403 -1 O VAL A 395 N ILE A 358 SHEET 3 AA2 7 PRO A 506 GLU A 515 -1 O VAL A 511 N ASP A 398 SHEET 4 AA2 7 GLY A 431 ASN A 437 -1 N LEU A 434 O VAL A 510 SHEET 5 AA2 7 THR A 376 TYR A 380 -1 N LYS A 378 O VAL A 433 SHEET 6 AA2 7 TYR H 99 TYR H 100 -1 O TYR H 100 N CYS A 379 SHEET 7 AA2 7 HIS H 100F TYR H 100G-1 O TYR H 100G N TYR H 99 SHEET 1 AA3 2 LYS A 452 ARG A 454 0 SHEET 2 AA3 2 LEU A 491 ASP A 493 -1 O ASN A 492 N TYR A 453 SHEET 1 AA4 4 GLN H 3 SER H 7 0 SHEET 2 AA4 4 LEU H 18 SER H 25 -1 O THR H 23 N GLN H 5 SHEET 3 AA4 4 GLN H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 AA4 4 VAL H 67 ASP H 72 -1 N ALA H 68 O LYS H 81 SHEET 1 AA5 6 LEU H 11 VAL H 12 0 SHEET 2 AA5 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA5 6 ALA H 88 ARG H 94 -1 N ALA H 88 O VAL H 109 SHEET 4 AA5 6 TRP H 35A GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 AA5 6 GLU H 46 ILE H 51 -1 O ILE H 51 N TRP H 35A SHEET 6 AA5 6 THR H 57 TYR H 59 -1 O PHE H 58 N SER H 50 SHEET 1 AA6 4 SER H 120 LEU H 124 0 SHEET 2 AA6 4 ALA H 137 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA6 4 TYR H 176 THR H 183 -1 O LEU H 178 N VAL H 142 SHEET 4 AA6 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA7 4 SER H 120 LEU H 124 0 SHEET 2 AA7 4 ALA H 137 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA7 4 TYR H 176 THR H 183 -1 O LEU H 178 N VAL H 142 SHEET 4 AA7 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA8 3 VAL H 150 TRP H 154 0 SHEET 2 AA8 3 TYR H 194 HIS H 200 -1 O ASN H 199 N THR H 151 SHEET 3 AA8 3 THR H 205 VAL H 207 -1 O THR H 205 N HIS H 200 SHEET 1 AA9 3 VAL H 150 TRP H 154 0 SHEET 2 AA9 3 TYR H 194 HIS H 200 -1 O ASN H 199 N THR H 151 SHEET 3 AA9 3 LYS H 210 VAL H 211 -1 O VAL H 211 N TYR H 194 SHEET 1 AB1 4 LEU L 4 THR L 5 0 SHEET 2 AB1 4 VAL L 18 ARG L 24 -1 O THR L 23 N THR L 5 SHEET 3 AB1 4 SER L 70 ILE L 75 -1 O ALA L 71 N CYS L 22 SHEET 4 AB1 4 PHE L 62 ASP L 66A-1 N SER L 63 O THR L 74 SHEET 1 AB2 5 SER L 9 SER L 11 0 SHEET 2 AB2 5 THR L 102 THR L 105 1 O LYS L 103 N MET L 10 SHEET 3 AB2 5 ALA L 84 TYR L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AB2 5 GLN L 34 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 AB2 5 PRO L 44 ILE L 48 -1 O THR L 45 N GLN L 37 SHEET 1 AB3 4 SER L 9 SER L 11 0 SHEET 2 AB3 4 THR L 102 THR L 105 1 O LYS L 103 N MET L 10 SHEET 3 AB3 4 ALA L 84 TYR L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AB3 4 TRP L 96 PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 AB4 4 THR L 115 PHE L 119 0 SHEET 2 AB4 4 ALA L 131 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 AB4 4 TYR L 173 LEU L 181 -1 O LEU L 181 N ALA L 131 SHEET 4 AB4 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 AB5 4 THR L 115 PHE L 119 0 SHEET 2 AB5 4 ALA L 131 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 AB5 4 TYR L 173 LEU L 181 -1 O LEU L 181 N ALA L 131 SHEET 4 AB5 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 AB6 4 SER L 154 PRO L 155 0 SHEET 2 AB6 4 THR L 146 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 AB6 4 SER L 193 HIS L 198 -1 O GLN L 195 N ALA L 148 SHEET 4 AB6 4 SER L 201 THR L 206 -1 O LYS L 205 N CYS L 194 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.04 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.03 SSBOND 3 CYS A 391 CYS A 524 1555 1555 2.05 SSBOND 4 CYS A 480 CYS A 487 1555 1555 2.07 SSBOND 5 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 6 CYS H 140 CYS H 196 1555 1555 2.02 SSBOND 7 CYS L 22 CYS L 88 1555 1555 2.04 SSBOND 8 CYS L 135 CYS L 194 1555 1555 2.03 LINK ND2 ASN A 343 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 CISPEP 1 PHE H 146 PRO H 147 0 -17.54 CISPEP 2 GLU H 148 PRO H 149 0 -2.06 CISPEP 3 TYR L 141 PRO L 142 0 -10.05 CRYST1 51.311 69.546 95.215 90.00 105.63 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019489 0.000000 0.005453 0.00000 SCALE2 0.000000 0.014379 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010906 0.00000