HEADER IMMUNE SYSTEM 02-FEB-22 7TUD TITLE CRYSTAL STRUCTURE OF HLA-B*44:05 (T73C) WITH 6MER EEFGRC AND DIPEPTIDE TITLE 2 GL COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 21-119; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: EEFGRC PEPTIDE; COMPND 13 CHAIN: P; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: TRUNCATED SYNTHETIC PEPTIDE: 6MER; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: GL DIPEPTIDE; COMPND 18 CHAIN: Q; COMPND 19 ENGINEERED: YES; COMPND 20 OTHER_DETAILS: SYNTHETIC DIPEPTIDE: GL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: HLA-B44:05; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21B; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 32630; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 23 ORGANISM_TAXID: 32630; SOURCE 24 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS TAPASIN, HISTOCOMPATIBILITY COMPLEX CLASS I, MHC-I, HLA, PEPTIDE KEYWDS 2 EDITING, PEPTIDE LOADING COMPLEX, PLC, ANTIGEN PRESENTATION, IMMUNE KEYWDS 3 RESPONSE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.JIANG,K.NATARAJAN,E.KIM,L.F.BOYD,D.H.MARGULIES REVDAT 4 30-OCT-24 7TUD 1 REMARK REVDAT 3 18-OCT-23 7TUD 1 REMARK REVDAT 2 28-SEP-22 7TUD 1 JRNL REMARK REVDAT 1 07-SEP-22 7TUD 0 JRNL AUTH J.JIANG,D.K.TAYLOR,E.J.KIM,L.F.BOYD,J.AHMAD,M.G.MAGE, JRNL AUTH 2 H.V.TRUONG,C.H.WOODWARD,N.G.SGOURAKIS,P.CRESSWELL, JRNL AUTH 3 D.H.MARGULIES,K.NATARAJAN JRNL TITL STRUCTURAL MECHANISM OF TAPASIN-MEDIATED MHC-I PEPTIDE JRNL TITL 2 LOADING IN ANTIGEN PRESENTATION. JRNL REF NAT COMMUN V. 13 5470 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36115831 JRNL DOI 10.1038/S41467-022-33153-8 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 74712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8800 - 4.3500 0.99 2866 151 0.1554 0.1720 REMARK 3 2 4.3500 - 3.4500 1.00 2720 143 0.1429 0.1603 REMARK 3 3 3.4500 - 3.0200 0.99 2694 141 0.1601 0.1998 REMARK 3 4 3.0200 - 2.7400 1.00 2670 141 0.1749 0.1666 REMARK 3 5 2.7400 - 2.5400 1.00 2678 141 0.1852 0.2086 REMARK 3 6 2.5400 - 2.3900 0.99 2660 140 0.1897 0.1951 REMARK 3 7 2.3900 - 2.2700 0.99 2652 140 0.1917 0.2161 REMARK 3 8 2.2700 - 2.1700 0.99 2642 139 0.1955 0.2104 REMARK 3 9 2.1700 - 2.0900 1.00 2631 138 0.1969 0.2278 REMARK 3 10 2.0900 - 2.0200 0.99 2642 139 0.1920 0.2279 REMARK 3 11 2.0200 - 1.9600 1.00 2628 138 0.2120 0.2486 REMARK 3 12 1.9600 - 1.9000 0.99 2624 139 0.2261 0.2522 REMARK 3 13 1.9000 - 1.8500 0.99 2639 138 0.2220 0.2490 REMARK 3 14 1.8500 - 1.8000 0.99 2606 138 0.2261 0.2584 REMARK 3 15 1.8000 - 1.7600 0.99 2618 137 0.2238 0.2098 REMARK 3 16 1.7600 - 1.7300 0.99 2628 139 0.2273 0.2650 REMARK 3 17 1.7300 - 1.6900 0.99 2596 136 0.2481 0.3070 REMARK 3 18 1.6900 - 1.6600 0.99 2593 137 0.2604 0.2722 REMARK 3 19 1.6600 - 1.6300 0.99 2623 138 0.2719 0.2719 REMARK 3 20 1.6300 - 1.6000 0.99 2626 138 0.2735 0.3209 REMARK 3 21 1.6000 - 1.5800 0.98 2560 135 0.2863 0.3130 REMARK 3 22 1.5800 - 1.5500 0.99 2613 137 0.2762 0.3263 REMARK 3 23 1.5500 - 1.5300 0.98 2558 135 0.2586 0.2490 REMARK 3 24 1.5300 - 1.5100 0.98 2601 137 0.2548 0.2833 REMARK 3 25 1.5100 - 1.4900 0.99 2571 135 0.2795 0.2835 REMARK 3 26 1.4900 - 1.4700 0.96 2544 134 0.2805 0.3304 REMARK 3 27 1.4700 - 1.4500 0.95 2494 131 0.3056 0.3261 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.189 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3254 REMARK 3 ANGLE : 0.927 4419 REMARK 3 CHIRALITY : 0.071 453 REMARK 3 PLANARITY : 0.007 584 REMARK 3 DIHEDRAL : 13.106 1219 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.653 5.734 24.048 REMARK 3 T TENSOR REMARK 3 T11: 0.1615 T22: 0.1541 REMARK 3 T33: 0.1477 T12: -0.0180 REMARK 3 T13: 0.0048 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 5.1683 L22: 3.9889 REMARK 3 L33: 0.5280 L12: -3.7251 REMARK 3 L13: 0.7081 L23: -0.4380 REMARK 3 S TENSOR REMARK 3 S11: 0.0547 S12: 0.0940 S13: -0.1580 REMARK 3 S21: -0.0755 S22: -0.0235 S23: 0.1462 REMARK 3 S31: 0.0062 S32: -0.0332 S33: -0.0312 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 57:174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.481 15.870 23.644 REMARK 3 T TENSOR REMARK 3 T11: 0.1824 T22: 0.1728 REMARK 3 T33: 0.1565 T12: 0.0036 REMARK 3 T13: 0.0065 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.7321 L22: 0.7944 REMARK 3 L33: 0.3284 L12: 0.1474 REMARK 3 L13: 0.1829 L23: 0.1680 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: 0.1480 S13: 0.0941 REMARK 3 S21: -0.0902 S22: 0.0302 S23: -0.0253 REMARK 3 S31: -0.0272 S32: 0.0165 S33: -0.0055 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 175:274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.147 15.178 49.871 REMARK 3 T TENSOR REMARK 3 T11: 0.1810 T22: 0.1917 REMARK 3 T33: 0.1842 T12: 0.0017 REMARK 3 T13: 0.0038 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.2134 L22: 0.1214 REMARK 3 L33: 7.4124 L12: 0.0956 REMARK 3 L13: -0.6511 L23: 0.2455 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: -0.0656 S13: -0.0129 REMARK 3 S21: 0.0456 S22: 0.0215 S23: 0.0279 REMARK 3 S31: -0.2132 S32: -0.0538 S33: -0.0541 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 0:5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.226 4.857 43.339 REMARK 3 T TENSOR REMARK 3 T11: 0.2708 T22: 0.2938 REMARK 3 T33: 0.3869 T12: 0.0226 REMARK 3 T13: 0.0409 T23: 0.0806 REMARK 3 L TENSOR REMARK 3 L11: 2.0749 L22: 2.6126 REMARK 3 L33: 6.4468 L12: -1.7057 REMARK 3 L13: -3.1516 L23: 1.1734 REMARK 3 S TENSOR REMARK 3 S11: -0.2326 S12: -0.7292 S13: -0.4666 REMARK 3 S21: -0.4301 S22: -0.1880 S23: -1.4481 REMARK 3 S31: -0.0462 S32: 0.8950 S33: 0.4358 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 6:11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.230 2.414 45.656 REMARK 3 T TENSOR REMARK 3 T11: 0.2029 T22: 0.1604 REMARK 3 T33: 0.1995 T12: 0.0160 REMARK 3 T13: 0.0304 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 4.2325 L22: 1.1987 REMARK 3 L33: 6.8621 L12: -0.6218 REMARK 3 L13: 5.2573 L23: -0.3183 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: 0.0500 S13: -0.3237 REMARK 3 S21: 0.0207 S22: -0.0123 S23: 0.0788 REMARK 3 S31: -0.0116 S32: -0.0671 S33: -0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 12:19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.326 -1.528 44.049 REMARK 3 T TENSOR REMARK 3 T11: 0.1957 T22: 0.3224 REMARK 3 T33: 0.4700 T12: -0.0438 REMARK 3 T13: 0.0411 T23: 0.0663 REMARK 3 L TENSOR REMARK 3 L11: 4.3599 L22: 7.2398 REMARK 3 L33: 4.1250 L12: 5.3495 REMARK 3 L13: -2.4558 L23: -2.2497 REMARK 3 S TENSOR REMARK 3 S11: 0.0795 S12: 0.3380 S13: 0.1646 REMARK 3 S21: 0.3281 S22: 0.1605 S23: 1.2543 REMARK 3 S31: 0.1728 S32: -0.8293 S33: -0.2026 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 20:41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.901 -2.146 40.692 REMARK 3 T TENSOR REMARK 3 T11: 0.2237 T22: 0.1807 REMARK 3 T33: 0.1578 T12: 0.0130 REMARK 3 T13: 0.0112 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 9.1912 L22: 5.2597 REMARK 3 L33: 1.6994 L12: 5.8315 REMARK 3 L13: -2.6887 L23: -1.1051 REMARK 3 S TENSOR REMARK 3 S11: -0.2440 S12: 0.0689 S13: -0.2052 REMARK 3 S21: -0.1450 S22: 0.0817 S23: -0.0077 REMARK 3 S31: 0.1868 S32: -0.0408 S33: 0.1663 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 42:51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.103 -11.362 39.393 REMARK 3 T TENSOR REMARK 3 T11: 0.3617 T22: 0.1995 REMARK 3 T33: 0.3733 T12: 0.0253 REMARK 3 T13: 0.0628 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 5.0255 L22: 7.5259 REMARK 3 L33: 3.5415 L12: 2.6384 REMARK 3 L13: -3.2979 L23: 1.1762 REMARK 3 S TENSOR REMARK 3 S11: -0.4273 S12: 0.0149 S13: -0.5936 REMARK 3 S21: -0.8477 S22: 0.0548 S23: -0.2262 REMARK 3 S31: 1.3691 S32: 0.3090 S33: 0.3393 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 52:61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.815 9.161 34.555 REMARK 3 T TENSOR REMARK 3 T11: 0.1836 T22: 0.1565 REMARK 3 T33: 0.1596 T12: 0.0345 REMARK 3 T13: 0.0269 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 6.5343 L22: 4.3803 REMARK 3 L33: 7.6983 L12: 3.6081 REMARK 3 L13: 2.5128 L23: -2.6218 REMARK 3 S TENSOR REMARK 3 S11: 0.1225 S12: -0.0124 S13: 0.1946 REMARK 3 S21: -0.0294 S22: -0.1625 S23: 0.2379 REMARK 3 S31: 0.2676 S32: -0.2154 S33: 0.0793 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 62:71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.402 -1.682 37.723 REMARK 3 T TENSOR REMARK 3 T11: 0.2253 T22: 0.1529 REMARK 3 T33: 0.2648 T12: -0.0045 REMARK 3 T13: -0.0053 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 6.0089 L22: 4.6257 REMARK 3 L33: 4.1470 L12: 5.1384 REMARK 3 L13: -4.3317 L23: -3.9493 REMARK 3 S TENSOR REMARK 3 S11: -0.2988 S12: 0.2171 S13: -0.1067 REMARK 3 S21: -0.4607 S22: 0.2639 S23: 0.3139 REMARK 3 S31: 0.3288 S32: -0.1926 S33: 0.0240 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN B AND RESID 72:77 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.600 -10.744 51.376 REMARK 3 T TENSOR REMARK 3 T11: 0.3828 T22: 0.3990 REMARK 3 T33: 0.4729 T12: -0.0353 REMARK 3 T13: 0.0421 T23: 0.0871 REMARK 3 L TENSOR REMARK 3 L11: 4.5995 L22: 5.8259 REMARK 3 L33: 6.1147 L12: 5.1745 REMARK 3 L13: -5.2912 L23: -5.9638 REMARK 3 S TENSOR REMARK 3 S11: -0.1083 S12: -1.2594 S13: -1.0415 REMARK 3 S21: 0.2940 S22: 0.4877 S23: 0.4074 REMARK 3 S31: 0.4766 S32: -0.7606 S33: -0.4827 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN B AND RESID 78:90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.862 -5.548 46.548 REMARK 3 T TENSOR REMARK 3 T11: 0.2690 T22: 0.2579 REMARK 3 T33: 0.3204 T12: 0.0484 REMARK 3 T13: 0.0339 T23: 0.1026 REMARK 3 L TENSOR REMARK 3 L11: 6.1500 L22: 4.3002 REMARK 3 L33: 1.4063 L12: 3.7483 REMARK 3 L13: -2.8137 L23: -1.3722 REMARK 3 S TENSOR REMARK 3 S11: -0.1386 S12: -0.4382 S13: -0.5772 REMARK 3 S21: 0.1274 S22: -0.0987 S23: -0.1905 REMARK 3 S31: 0.1874 S32: 0.1878 S33: 0.2148 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN B AND RESID 91:99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.370 -2.016 51.398 REMARK 3 T TENSOR REMARK 3 T11: 0.3283 T22: 0.2826 REMARK 3 T33: 0.2518 T12: -0.0293 REMARK 3 T13: 0.0652 T23: 0.0576 REMARK 3 L TENSOR REMARK 3 L11: 2.8154 L22: 6.5100 REMARK 3 L33: 6.1225 L12: -3.9621 REMARK 3 L13: -1.7202 L23: 0.2971 REMARK 3 S TENSOR REMARK 3 S11: -0.3170 S12: -0.5429 S13: -0.4705 REMARK 3 S21: 0.7915 S22: 0.0094 S23: 0.2548 REMARK 3 S31: 0.1945 S32: -0.1105 S33: 0.2643 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: ( CHAIN P AND RESID 1:6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.636 14.327 16.926 REMARK 3 T TENSOR REMARK 3 T11: 0.2456 T22: 0.2014 REMARK 3 T33: 0.2648 T12: -0.0065 REMARK 3 T13: 0.0207 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 6.5735 L22: 6.8450 REMARK 3 L33: 4.0099 L12: 1.4137 REMARK 3 L13: 0.9551 L23: 0.9791 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: 0.2874 S13: 0.1586 REMARK 3 S21: -0.2148 S22: -0.0352 S23: -0.8799 REMARK 3 S31: 0.0600 S32: 0.1355 S33: 0.0264 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TUD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000262904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 6.5-9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74712 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 39.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.07130 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.94250 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1M6O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1500, 0.1M SPG (SUCCINIC ACID, REMARK 280 SODIUM PHOSPHATE MONOBASIC MONOHYDRATE AND GLYCINE), PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.58250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.60350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.87850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.60350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.58250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.87850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 ILE B 1 CG1 CG2 CD1 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 146 CE REMARK 480 ASP A 223 OD2 REMARK 480 LYS A 268 CD CE NZ REMARK 480 LYS B 58 CE NZ REMARK 480 GLU B 69 CG OE2 REMARK 480 LYS B 75 CG CD CE NZ REMARK 480 GLN B 89 OE1 REMARK 480 GLY Q 8 CA C REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 14 70.76 -155.96 REMARK 500 ASP A 29 -127.84 55.02 REMARK 500 GLN A 224 51.64 -99.84 REMARK 500 ARG A 239 -22.48 85.57 REMARK 500 TRP B 60 -5.71 74.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH P 118 DISTANCE = 5.97 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7TUC RELATED DB: PDB REMARK 900 RELATED ID: 7TUE RELATED DB: PDB REMARK 900 RELATED ID: 7TUF RELATED DB: PDB REMARK 900 RELATED ID: 7TUG RELATED DB: PDB REMARK 900 RELATED ID: 7TUH RELATED DB: PDB DBREF 7TUD A 1 274 PDB 7TUD 7TUD 1 274 DBREF 7TUD B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 7TUD P 1 6 PDB 7TUD 7TUD 1 6 DBREF 7TUD Q 8 9 PDB 7TUD 7TUD 8 9 SEQADV 7TUD MET B 0 UNP P61769 INITIATING METHIONINE SEQRES 1 A 274 GLY SER HIS SER MET ARG TYR PHE TYR THR ALA MET SER SEQRES 2 A 274 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE THR VAL GLY SEQRES 3 A 274 TYR VAL ASP ASP THR LEU PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 274 ALA THR SER PRO ARG LYS GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 274 GLU GLN GLU GLY PRO GLU TYR TRP ASP ARG GLU THR GLN SEQRES 6 A 274 ILE SER LYS THR ASN THR GLN CYS TYR ARG GLU ASN LEU SEQRES 7 A 274 ARG THR ALA LEU ARG TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 274 SER HIS ILE ILE GLN ARG MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 274 PRO ASP GLY ARG LEU LEU ARG GLY TYR ASP GLN TYR ALA SEQRES 10 A 274 TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 274 SER SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR SEQRES 12 A 274 GLN ARG LYS TRP GLU ALA ALA ARG VAL ALA GLU GLN ASP SEQRES 13 A 274 ARG ALA TYR LEU GLU GLY LEU CYS VAL GLU SER LEU ARG SEQRES 14 A 274 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG ALA SEQRES 15 A 274 ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO ILE SER SEQRES 16 A 274 ASP HIS GLU VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 274 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 274 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 274 PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 274 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 274 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 274 TRP SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 P 6 GLU GLU PHE GLY ARG CYS SEQRES 1 Q 2 GLY LEU HET EDO A 301 4 HET GOL A 302 6 HET EDO A 303 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 EDO 2(C2 H6 O2) FORMUL 6 GOL C3 H8 O3 FORMUL 8 HOH *583(H2 O) HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 ALA A 150 1 14 HELIX 4 AA4 ARG A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 GLU A 253 GLN A 255 5 3 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N GLY A 26 O PHE A 33 SHEET 4 AA1 8 HIS A 3 MET A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 ILE A 94 VAL A 103 -1 O ILE A 95 N ALA A 11 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O TYR A 123 N TYR A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 ILE B 35 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 HIS B 84 -1 O ASN B 83 N GLU B 36 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SSBOND 1 CYS A 73 CYS P 6 1555 1555 2.01 SSBOND 2 CYS A 101 CYS A 164 1555 1555 2.03 SSBOND 3 CYS A 203 CYS A 259 1555 1555 2.00 SSBOND 4 CYS B 25 CYS B 80 1555 1555 2.01 CISPEP 1 TYR A 209 PRO A 210 0 1.18 CISPEP 2 HIS B 31 PRO B 32 0 3.25 CRYST1 49.165 79.757 107.207 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020340 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009328 0.00000